RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 SYT10Q6XYQ8 523 aa9.34□□□□□ -0.91
VPS53-203ENST00000401468 BZW1Q7L1Q6 419 aaKnown RBP9.34□□□□□ -0.91
VPS53-203ENST00000401468 ZNF572Q7Z3I7 529 aaPredicted RBP9.34□□□□□ -0.91
VPS53-203ENST00000401468 RFX6Q8HWS3 928 aa9.34□□□□□ -0.91
VPS53-203ENST00000401468 ZCCHC9Q8N567 271 aaKnown RBP9.34□□□□□ -0.91
VPS53-203ENST00000401468 TEX26Q8N6G2 289 aa9.34□□□□□ -0.91
VPS53-203ENST00000401468 CCDC26Q8TAB7 109 aa9.34□□□□□ -0.91
VPS53-203ENST00000401468 SLC35B2Q8TB61 432 aa9.34□□□□□ -0.91
VPS53-203ENST00000401468 FRS2Q8WU20 508 aa9.34□□□□□ -0.91
VPS53-203ENST00000401468 CASKIN2Q8WXE0 1202 aa9.34□□□□□ -0.91
VPS53-203ENST00000401468 MAML1Q92585 1016 aa9.34□□□□□ -0.91
VPS53-203ENST00000401468 VOPP1Q96AW1 172 aa9.34□□□□□ -0.91
VPS53-203ENST00000401468 CELF6Q96J87 481 aaKnown RBP9.34□□□□□ -0.91
VPS53-203ENST00000401468 C16orf45Q96MC5 204 aaPredicted RBP9.34□□□□□ -0.91
VPS53-203ENST00000401468 GABRG3Q99928 467 aa9.34□□□□□ -0.91
VPS53-203ENST00000401468 HEMGNQ9BXL5 484 aa9.34□□□□□ -0.91
VPS53-203ENST00000401468 MAK16Q9BXY0 300 aaKnown RBP9.34□□□□□ -0.91
VPS53-203ENST00000401468 MUC3BQ9H195 1237 aa9.34□□□□□ -0.91
VPS53-203ENST00000401468 TMEM9BQ9NQ34 198 aa9.34□□□□□ -0.91
VPS53-203ENST00000401468 THAP10Q9P2Z0 257 aaPredicted RBP9.34□□□□□ -0.91
VPS53-203ENST00000401468 RNF14Q9UBS8 474 aa9.34□□□□□ -0.91
VPS53-203ENST00000401468 VPS51Q9UID3 782 aa9.34□□□□□ -0.91
VPS53-203ENST00000401468 VPS28Q9UK41 221 aa9.34□□□□□ -0.91
VPS53-203ENST00000401468 PILRBQ9UKJ0 227 aa9.34□□□□□ -0.91
VPS53-203ENST00000401468 SAR1BQ9Y6B6 198 aa9.34□□□□□ -0.91
VPS53-203ENST00000401468 NAV2Q8IVL1 2488 aa9.34□□□□□ -0.91
VPS53-203ENST00000401468 NBEAQ8NFP9 2946 aa9.34□□□□□ -0.91
VPS53-203ENST00000401468 ARID1BQ8NFD5 2236 aaPredicted RBP9.33□□□□□ -0.92
VPS53-203ENST00000401468 DMXL2Q8TDJ6 3036 aa9.33□□□□□ -0.92
VPS53-203ENST00000401468 MEI4A8MW99 385 aa9.33□□□□□ -0.92
VPS53-203ENST00000401468 HACD1B0YJ81 288 aa9.33□□□□□ -0.92
VPS53-203ENST00000401468 ESPNB1AK53 854 aa9.33□□□□□ -0.92
VPS53-203ENST00000401468 PGRMC1O00264 195 aaKnown RBP9.33□□□□□ -0.92
VPS53-203ENST00000401468 PLK4O00444 970 aa9.33□□□□□ -0.92
VPS53-203ENST00000401468 SNAP91O60641 907 aa9.33□□□□□ -0.92
VPS53-203ENST00000401468 ZNF821O75541 412 aaPredicted RBP9.33□□□□□ -0.92
VPS53-203ENST00000401468 ZNF189O75820 626 aaPredicted RBP9.33□□□□□ -0.92
VPS53-203ENST00000401468 FGGP02679 453 aa9.33□□□□□ -0.92
VPS53-203ENST00000401468 ATP5BP06576 529 aaKnown RBP9.33□□□□□ -0.92
VPS53-203ENST00000401468 SDHBP21912 280 aa9.33□□□□□ -0.92
VPS53-203ENST00000401468 GLDCP23378 1020 aa9.33□□□□□ -0.92
VPS53-203ENST00000401468 CCNCP24863 283 aa9.33□□□□□ -0.92
VPS53-203ENST00000401468 CASQ1P31415 396 aa9.33□□□□□ -0.92
VPS53-203ENST00000401468 SERPINH1P50454 418 aaKnown RBP9.33□□□□□ -0.92
VPS53-203ENST00000401468 GEMIN4P57678 1058 aaKnown RBP9.33□□□□□ -0.92
VPS53-203ENST00000401468 ECT2LQ008S8 904 aa9.33□□□□□ -0.92
VPS53-203ENST00000401468 OTUD4Q01804 1114 aaKnown RBP9.33□□□□□ -0.92
VPS53-203ENST00000401468 RFTN1Q14699 578 aaPredicted RBP9.33□□□□□ -0.92
VPS53-203ENST00000401468 PDK1Q15118 436 aa9.33□□□□□ -0.92
VPS53-203ENST00000401468 OASLQ15646 514 aaKnown RBP9.33□□□□□ -0.92
VPS53-203ENST00000401468 TMCO4Q5TGY1 634 aa9.33□□□□□ -0.92
VPS53-203ENST00000401468 KAZNQ674X7 775 aa9.33□□□□□ -0.92
VPS53-203ENST00000401468 NPNTQ6UXI9 565 aa9.33□□□□□ -0.92
VPS53-203ENST00000401468 ARHGAP36Q6ZRI8 547 aa9.33□□□□□ -0.92
VPS53-203ENST00000401468 TRMT11Q7Z4G4 463 aaKnown RBP9.33□□□□□ -0.92
VPS53-203ENST00000401468 TMPRSS6Q8IU80 811 aa9.33□□□□□ -0.92
VPS53-203ENST00000401468 SYT12Q8IV01 421 aa9.33□□□□□ -0.92
VPS53-203ENST00000401468 SH2D3CQ8N5H7 860 aa9.33□□□□□ -0.92
VPS53-203ENST00000401468 ACTL9Q8TC94 416 aa9.33□□□□□ -0.92
VPS53-203ENST00000401468 TRAF3IP1Q8TDR0 691 aaPredicted RBP9.33□□□□□ -0.92
VPS53-203ENST00000401468 MAIP1Q8WWC4 291 aa9.33□□□□□ -0.92
VPS53-203ENST00000401468 P3H4Q92791 437 aa9.33□□□□□ -0.92
VPS53-203ENST00000401468 ISG20Q96AZ6 181 aaKnown RBP9.33□□□□□ -0.92
VPS53-203ENST00000401468 TOE1Q96GM8 510 aaKnown RBP9.33□□□□□ -0.92
VPS53-203ENST00000401468 ZNF419Q96HQ0 510 aaPredicted RBP9.33□□□□□ -0.92
VPS53-203ENST00000401468 QKIQ96PU8 341 aaKnown RBP eCLIP9.33□□□□□ -0.92
VPS53-203ENST00000401468 CEP44Q9C0F1 390 aa9.33□□□□□ -0.92
VPS53-203ENST00000401468 IL21RQ9HBE5 538 aa9.33□□□□□ -0.92
VPS53-203ENST00000401468 ATP13A1Q9HD20 1204 aa9.33□□□□□ -0.92
VPS53-203ENST00000401468 SAE1Q9UBE0 346 aaPredicted RBP9.33□□□□□ -0.92
VPS53-203ENST00000401468 AMACRQ9UHK6 382 aa9.33□□□□□ -0.92
VPS53-203ENST00000401468 IPO11Q9UI26 975 aaKnown RBP9.33□□□□□ -0.92
VPS53-203ENST00000401468 ERVW-1Q9UQF0 538 aa9.33□□□□□ -0.92
VPS53-203ENST00000401468 R3HDM2Q9Y2K5 976 aaKnown RBP9.33□□□□□ -0.92
VPS53-203ENST00000401468 BPTFQ12830 3046 aa9.32□□□□□ -0.92
VPS53-203ENST00000401468 SLC35F4A4IF30 521 aa9.32□□□□□ -0.92
VPS53-203ENST00000401468 FAM47DPA6NHR8 397 aa9.32□□□□□ -0.92
VPS53-203ENST00000401468 C1QTNF9BB2RNN3 333 aa9.32□□□□□ -0.92
VPS53-203ENST00000401468 J3KR12 359 aa9.32□□□□□ -0.92
VPS53-203ENST00000401468 PPP1R12AO14974 1030 aaPredicted RBP9.32□□□□□ -0.92
VPS53-203ENST00000401468 ZNF185O15231 689 aa9.32□□□□□ -0.92
VPS53-203ENST00000401468 MATN3O15232 486 aa9.32□□□□□ -0.92
VPS53-203ENST00000401468 CEP104O60308 925 aa9.32□□□□□ -0.92
VPS53-203ENST00000401468 SYNCRIPO60506 623 aaKnown RBP9.32□□□□□ -0.92
VPS53-203ENST00000401468 LILRA1O75019 489 aa9.32□□□□□ -0.92
VPS53-203ENST00000401468 MT-CO1P00395 513 aa9.32□□□□□ -0.92
VPS53-203ENST00000401468 C1QTNF9P0C862 333 aa9.32□□□□□ -0.92
VPS53-203ENST00000401468 SRCP12931 536 aa9.32□□□□□ -0.92
VPS53-203ENST00000401468 POLR2EP19388 210 aaKnown RBP9.32□□□□□ -0.92
VPS53-203ENST00000401468 ACSL1P33121 698 aa9.32□□□□□ -0.92
VPS53-203ENST00000401468 STK19P49842 368 aaPredicted RBP9.32□□□□□ -0.92
VPS53-203ENST00000401468 DNA2P51530 1060 aa9.32□□□□□ -0.92
VPS53-203ENST00000401468 TPMTP51580 245 aa9.32□□□□□ -0.92
VPS53-203ENST00000401468 COPAP53621 1224 aa9.32□□□□□ -0.92
VPS53-203ENST00000401468 LIMK1P53667 647 aa9.32□□□□□ -0.92
VPS53-203ENST00000401468 DYNLT1P63172 113 aa9.32□□□□□ -0.92
VPS53-203ENST00000401468 IFI35P80217 286 aaPredicted RBP9.32□□□□□ -0.92
VPS53-203ENST00000401468 HNRNPDQ14103 355 aaKnown RBP9.32□□□□□ -0.92
VPS53-203ENST00000401468 STARD3Q14849 445 aa9.32□□□□□ -0.92
VPS53-203ENST00000401468 CCNG2Q16589 344 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms