RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 XPAP23025 273 aaPredicted RBP14.34□□□□□ -0.11
SKA1-202ENST00000398452 ECHS1P30084 290 aa14.34□□□□□ -0.11
SKA1-202ENST00000398452 PHBP35232 272 aa14.34□□□□□ -0.11
SKA1-202ENST00000398452 RGRP47804 291 aa14.34□□□□□ -0.11
SKA1-202ENST00000398452 CCNHP51946 323 aaPredicted RBP14.34□□□□□ -0.11
SKA1-202ENST00000398452 PMS2P54278 862 aa14.34□□□□□ -0.11
SKA1-202ENST00000398452 NHLH1Q02575 133 aa14.34□□□□□ -0.11
SKA1-202ENST00000398452 STARD3Q14849 445 aa14.34□□□□□ -0.11
SKA1-202ENST00000398452 DGKKQ5KSL6 1271 aa14.34□□□□□ -0.11
SKA1-202ENST00000398452 KCTD11Q693B1 232 aa14.34□□□□□ -0.11
SKA1-202ENST00000398452 KDELC1Q6UW63 502 aa14.34□□□□□ -0.11
SKA1-202ENST00000398452 ZNF852Q6ZMS4 543 aa14.34□□□□□ -0.11
SKA1-202ENST00000398452 TPRG1Q6ZUI0 275 aa14.34□□□□□ -0.11
SKA1-202ENST00000398452 TRMT10CQ7L0Y3 403 aaKnown RBP14.34□□□□□ -0.11
SKA1-202ENST00000398452 CCNJLQ8IV13 435 aa14.34□□□□□ -0.11
SKA1-202ENST00000398452 PHTF2Q8N3S3 785 aa14.34□□□□□ -0.11
SKA1-202ENST00000398452 PPHLN1Q8NEY8 458 aaKnown RBP14.34□□□□□ -0.11
SKA1-202ENST00000398452 OR6K2Q8NGY2 324 aa14.34□□□□□ -0.11
SKA1-202ENST00000398452 KCNV2Q8TDN2 545 aa14.34□□□□□ -0.11
SKA1-202ENST00000398452 AENQ8WTP8 325 aaKnown RBP14.34□□□□□ -0.11
SKA1-202ENST00000398452 UBLCP1Q8WVY7 318 aaPredicted RBP14.34□□□□□ -0.11
SKA1-202ENST00000398452 ZNF419Q96HQ0 510 aaPredicted RBP14.34□□□□□ -0.11
SKA1-202ENST00000398452 MRGPRX3Q96LB0 322 aa14.34□□□□□ -0.11
SKA1-202ENST00000398452 MRGPRX2Q96LB1 330 aa14.34□□□□□ -0.11
SKA1-202ENST00000398452 NAT9Q9BTE0 207 aa14.34□□□□□ -0.11
SKA1-202ENST00000398452 OSBPL1AQ9BXW6 950 aa14.34□□□□□ -0.11
SKA1-202ENST00000398452 IL22Q9GZX6 179 aa14.34□□□□□ -0.11
SKA1-202ENST00000398452 CASS4Q9NQ75 786 aa14.34□□□□□ -0.11
SKA1-202ENST00000398452 DYRK4Q9NR20 520 aa14.34□□□□□ -0.11
SKA1-202ENST00000398452 THAP10Q9P2Z0 257 aaPredicted RBP14.34□□□□□ -0.11
SKA1-202ENST00000398452 STARD13Q9Y3M8 1113 aa14.34□□□□□ -0.11
SKA1-202ENST00000398452 PCDHGC4Q9Y5F7 938 aa14.34□□□□□ -0.11
SKA1-202ENST00000398452 MAGEB16A2A368 324 aa14.33□□□□□ -0.12
SKA1-202ENST00000398452 AGTP01019 485 aa14.33□□□□□ -0.12
SKA1-202ENST00000398452 PRNPP04156 253 aa14.33□□□□□ -0.12
SKA1-202ENST00000398452 MAGEA4P43358 317 aa14.33□□□□□ -0.12
SKA1-202ENST00000398452 SEC13P55735 322 aa14.33□□□□□ -0.12
SKA1-202ENST00000398452 POLR2LP62875 67 aaKnown RBP14.33□□□□□ -0.12
SKA1-202ENST00000398452 PRKCQQ04759 706 aa14.33□□□□□ -0.12
SKA1-202ENST00000398452 MLF2Q15773 248 aaPredicted RBP14.33□□□□□ -0.12
SKA1-202ENST00000398452 PTPRNQ16849 979 aa14.33□□□□□ -0.12
SKA1-202ENST00000398452 HNRNPA1L2Q32P51 320 aaKnown RBP14.33□□□□□ -0.12
SKA1-202ENST00000398452 CCDC38Q502W7 563 aa14.33□□□□□ -0.12
SKA1-202ENST00000398452 TMEM196Q5HYL7 178 aa14.33□□□□□ -0.12
SKA1-202ENST00000398452 DPY19L3Q6ZPD9 716 aa14.33□□□□□ -0.12
SKA1-202ENST00000398452 KLHDC8BQ8IXV7 354 aa14.33□□□□□ -0.12
SKA1-202ENST00000398452 FBXL6Q8N531 539 aa14.33□□□□□ -0.12
SKA1-202ENST00000398452 LPCAT1Q8NF37 534 aa14.33□□□□□ -0.12
SKA1-202ENST00000398452 MYO19Q96H55 970 aa14.33□□□□□ -0.12
SKA1-202ENST00000398452 PPP1R16AQ96I34 528 aa14.33□□□□□ -0.12
SKA1-202ENST00000398452 ZNF641Q96N77 438 aaPredicted RBP14.33□□□□□ -0.12
SKA1-202ENST00000398452 SRPK1Q96SB4 655 aaKnown RBP14.33□□□□□ -0.12
SKA1-202ENST00000398452 RUFY1Q96T51 708 aa14.33□□□□□ -0.12
SKA1-202ENST00000398452 TDRD1Q9BXT4 1180 aaKnown RBP14.33□□□□□ -0.12
SKA1-202ENST00000398452 CPEB1Q9BZB8 566 aaKnown RBP14.33□□□□□ -0.12
SKA1-202ENST00000398452 ACBD3Q9H3P7 528 aa14.33□□□□□ -0.12
SKA1-202ENST00000398452 IL36AQ9UHA7 158 aa14.33□□□□□ -0.12
SKA1-202ENST00000398452 CHKBQ9Y259 395 aa14.33□□□□□ -0.12
SKA1-202ENST00000398452 C1QTNF3-AMACRE9PGA6 284 aa14.32□□□□□ -0.12
SKA1-202ENST00000398452 MMP2P08253 660 aa14.32□□□□□ -0.12
SKA1-202ENST00000398452 FAM153BP0C7A2 387 aa14.32□□□□□ -0.12
SKA1-202ENST00000398452 HNRNPLP14866 589 aaKnown RBP eCLIP14.32□□□□□ -0.12
SKA1-202ENST00000398452 H2AFXP16104 143 aaPredicted RBP14.32□□□□□ -0.12
SKA1-202ENST00000398452 MGAT1P26572 445 aa14.32□□□□□ -0.12
SKA1-202ENST00000398452 RPL26P61254 145 aaKnown RBP14.32□□□□□ -0.12
SKA1-202ENST00000398452 MRPS21P82921 87 aaKnown RBP14.32□□□□□ -0.12
SKA1-202ENST00000398452 SEPT6Q14141 434 aa14.32□□□□□ -0.12
SKA1-202ENST00000398452 LRRC32Q14392 662 aa14.32□□□□□ -0.12
SKA1-202ENST00000398452 ELAVL3Q14576 367 aaKnown RBP14.32□□□□□ -0.12
SKA1-202ENST00000398452 SLC1A5Q15758 541 aa14.32□□□□□ -0.12
SKA1-202ENST00000398452 FAM153CQ494X1 144 aa14.32□□□□□ -0.12
SKA1-202ENST00000398452 FNBP1LQ5T0N5 605 aa14.32□□□□□ -0.12
SKA1-202ENST00000398452 FAM46CQ5VWP2 391 aa14.32□□□□□ -0.12
SKA1-202ENST00000398452 EGFLAMQ63HQ2 1017 aa14.32□□□□□ -0.12
SKA1-202ENST00000398452 DENND2CQ68D51 928 aa14.32□□□□□ -0.12
SKA1-202ENST00000398452 NAIF1Q69YI7 327 aaPredicted RBP14.32□□□□□ -0.12
SKA1-202ENST00000398452 FBXO38Q6PIJ6 1188 aa14.32□□□□□ -0.12
SKA1-202ENST00000398452 GDPD4Q6W3E5 623 aa14.32□□□□□ -0.12
SKA1-202ENST00000398452 TMC3Q7Z5M5 1100 aa14.32□□□□□ -0.12
SKA1-202ENST00000398452 BMP8AQ7Z5Y6 402 aa14.32□□□□□ -0.12
SKA1-202ENST00000398452 UBALD2Q8IYN6 164 aa14.32□□□□□ -0.12
SKA1-202ENST00000398452 PRSS33Q8NF86 280 aa14.32□□□□□ -0.12
SKA1-202ENST00000398452 GRIN3AQ8TCU5 1115 aa14.32□□□□□ -0.12
SKA1-202ENST00000398452 STAMBPL1Q96FJ0 436 aa14.32□□□□□ -0.12
SKA1-202ENST00000398452 GORASP1Q9BQQ3 440 aa14.32□□□□□ -0.12
SKA1-202ENST00000398452 CCDC77Q9BR77 488 aa14.32□□□□□ -0.12
SKA1-202ENST00000398452 SUV39H2Q9H5I1 410 aa14.32□□□□□ -0.12
SKA1-202ENST00000398452 VPS37BQ9H9H4 285 aa14.32□□□□□ -0.12
SKA1-202ENST00000398452 ARHGEF3Q9NR81 526 aa14.32□□□□□ -0.12
SKA1-202ENST00000398452 CACNA2D2Q9NY47 1150 aa14.32□□□□□ -0.12
SKA1-202ENST00000398452 CA14Q9ULX7 337 aa14.32□□□□□ -0.12
SKA1-202ENST00000398452 RPL26L1Q9UNX3 145 aaKnown RBP14.32□□□□□ -0.12
SKA1-202ENST00000398452 CHMP2BQ9UQN3 213 aa14.32□□□□□ -0.12
SKA1-202ENST00000398452 PCDHB9Q9Y5E1 797 aa14.32□□□□□ -0.12
SKA1-202ENST00000398452 STON1Q9Y6Q2 735 aa14.32□□□□□ -0.12
SKA1-202ENST00000398452 MYO18AQ92614 2054 aaKnown RBP14.32□□□□□ -0.12
SKA1-202ENST00000398452 LOC285095A0A1B0GVY8 99 aa14.31□□□□□ -0.12
SKA1-202ENST00000398452 WASH3PC4AMC7 463 aa14.31□□□□□ -0.12
SKA1-202ENST00000398452 E7ESA3 106 aa14.31□□□□□ -0.12
SKA1-202ENST00000398452 ALOX15BO15296 676 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms