RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 ARHGAP10A1A4S6 786 aa12.81□□□□□ -0.36
SHMT1-205ENST00000395684 MBLAC1A4D2B0 266 aaPredicted RBP12.81□□□□□ -0.36
SHMT1-205ENST00000395684 UBDO15205 165 aa12.81□□□□□ -0.36
SHMT1-205ENST00000395684 CDK4P11802 303 aa12.81□□□□□ -0.36
SHMT1-205ENST00000395684 CCNCP24863 283 aa12.81□□□□□ -0.36
SHMT1-205ENST00000395684 ADRA1AP35348 466 aa12.81□□□□□ -0.36
SHMT1-205ENST00000395684 CD151P48509 253 aa12.81□□□□□ -0.36
SHMT1-205ENST00000395684 TECRLQ5HYJ1 363 aa12.81□□□□□ -0.36
SHMT1-205ENST00000395684 BTBD8Q5XKL5 378 aa12.81□□□□□ -0.36
SHMT1-205ENST00000395684 HMBOX1Q6NT76 420 aa12.81□□□□□ -0.36
SHMT1-205ENST00000395684 CUZD1Q86UP6 607 aa12.81□□□□□ -0.36
SHMT1-205ENST00000395684 CARM1Q86X55 608 aa12.81□□□□□ -0.36
SHMT1-205ENST00000395684 HERC6Q8IVU3 1022 aa12.81□□□□□ -0.36
SHMT1-205ENST00000395684 MYO1HQ8N1T3 1032 aa12.81□□□□□ -0.36
SHMT1-205ENST00000395684 PPHLN1Q8NEY8 458 aaKnown RBP12.81□□□□□ -0.36
SHMT1-205ENST00000395684 OR9I1Q8NGQ6 314 aa12.81□□□□□ -0.36
SHMT1-205ENST00000395684 SIK2Q9H0K1 926 aa12.81□□□□□ -0.36
SHMT1-205ENST00000395684 GLOD4Q9HC38 313 aa12.81□□□□□ -0.36
SHMT1-205ENST00000395684 GMPR2Q9P2T1 348 aaKnown RBP12.81□□□□□ -0.36
SHMT1-205ENST00000395684 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.81□□□□□ -0.36
SHMT1-205ENST00000395684 A0A087X1B8 175 aa12.8□□□□□ -0.36
SHMT1-205ENST00000395684 ARHGEF37A1IGU5 675 aa12.8□□□□□ -0.36
SHMT1-205ENST00000395684 HEATR9A2RTY3 570 aa12.8□□□□□ -0.36
SHMT1-205ENST00000395684 A8MT66 165 aa12.8□□□□□ -0.36
SHMT1-205ENST00000395684 H0YJX3 145 aa12.8□□□□□ -0.36
SHMT1-205ENST00000395684 PMPCBO75439 489 aa12.8□□□□□ -0.36
SHMT1-205ENST00000395684 CPB1P15086 417 aa12.8□□□□□ -0.36
SHMT1-205ENST00000395684 AFF1P51825 1210 aaKnown RBP12.8□□□□□ -0.36
SHMT1-205ENST00000395684 SQLEQ14534 574 aa12.8□□□□□ -0.36
SHMT1-205ENST00000395684 C6orf10Q5SRN2 563 aa12.8□□□□□ -0.36
SHMT1-205ENST00000395684 POTEHQ6S545 545 aa12.8□□□□□ -0.36
SHMT1-205ENST00000395684 LAYNQ6UX15 382 aa12.8□□□□□ -0.36
SHMT1-205ENST00000395684 CYHR1Q6ZMK1 362 aa12.8□□□□□ -0.36
SHMT1-205ENST00000395684 RNF34Q969K3 372 aa12.8□□□□□ -0.36
SHMT1-205ENST00000395684 TOP1MTQ969P6 601 aa12.8□□□□□ -0.36
SHMT1-205ENST00000395684 PPP1R10Q96QC0 940 aaKnown RBP12.8□□□□□ -0.36
SHMT1-205ENST00000395684 CIB1Q99828 191 aa12.8□□□□□ -0.36
SHMT1-205ENST00000395684 NOL11Q9H8H0 719 aaKnown RBP12.8□□□□□ -0.36
SHMT1-205ENST00000395684 SPAG4Q9NPE6 437 aa12.8□□□□□ -0.36
SHMT1-205ENST00000395684 NDFIP2Q9NV92 336 aa12.8□□□□□ -0.36
SHMT1-205ENST00000395684 TCRBV3S1A0A5B6 114 aa12.8□□□□□ -0.36
SHMT1-205ENST00000395684 PLOD2O00469 737 aa12.8□□□□□ -0.36
SHMT1-205ENST00000395684 MAFKO60675 156 aa12.8□□□□□ -0.36
SHMT1-205ENST00000395684 ANXA9O76027 345 aa12.8□□□□□ -0.36
SHMT1-205ENST00000395684 IPO13O94829 963 aaKnown RBP12.8□□□□□ -0.36
SHMT1-205ENST00000395684 MT-CO1P00395 513 aa12.8□□□□□ -0.36
SHMT1-205ENST00000395684 YWHAQP27348 245 aa12.8□□□□□ -0.36
SHMT1-205ENST00000395684 SLC12A2P55011 1212 aa12.8□□□□□ -0.36
SHMT1-205ENST00000395684 PFKPQ01813 784 aa12.8□□□□□ -0.36
SHMT1-205ENST00000395684 POU4F1Q01851 419 aa12.8□□□□□ -0.36
SHMT1-205ENST00000395684 NOMO2Q5JPE7 1267 aa12.8□□□□□ -0.36
SHMT1-205ENST00000395684 FAM110BQ8TC76 370 aa12.8□□□□□ -0.36
SHMT1-205ENST00000395684 PHF21BQ96EK2 531 aa12.8□□□□□ -0.36
SHMT1-205ENST00000395684 IL12RB2Q99665 862 aa12.8□□□□□ -0.36
SHMT1-205ENST00000395684 SLC39A3Q9BRY0 314 aa12.8□□□□□ -0.36
SHMT1-205ENST00000395684 ADARB2Q9NS39 739 aaKnown RBP12.8□□□□□ -0.36
SHMT1-205ENST00000395684 OLAHQ9NV23 265 aa12.8□□□□□ -0.36
SHMT1-205ENST00000395684 RRN3Q9NYV6 651 aa12.8□□□□□ -0.36
SHMT1-205ENST00000395684 UBFD1O14562 309 aaKnown RBP12.79□□□□□ -0.36
SHMT1-205ENST00000395684 TREHO43280 583 aa12.79□□□□□ -0.36
SHMT1-205ENST00000395684 TRMUO75648 421 aaKnown RBP12.79□□□□□ -0.36
SHMT1-205ENST00000395684 H6PDO95479 791 aa12.79□□□□□ -0.36
SHMT1-205ENST00000395684 SNRPB2P08579 225 aaKnown RBP12.79□□□□□ -0.36
SHMT1-205ENST00000395684 CKMT2P17540 419 aa12.79□□□□□ -0.36
SHMT1-205ENST00000395684 SLC7A1P30825 629 aa12.79□□□□□ -0.36
SHMT1-205ENST00000395684 ZNF135P52742 658 aaPredicted RBP12.79□□□□□ -0.36
SHMT1-205ENST00000395684 COG7P83436 770 aa12.79□□□□□ -0.36
SHMT1-205ENST00000395684 HPCAP84074 193 aa12.79□□□□□ -0.36
SHMT1-205ENST00000395684 ZNF33AQ06730 810 aa12.79□□□□□ -0.36
SHMT1-205ENST00000395684 TRAP1Q12931 704 aaKnown RBP12.79□□□□□ -0.36
SHMT1-205ENST00000395684 PITRM1Q5JRX3 1037 aa12.79□□□□□ -0.36
SHMT1-205ENST00000395684 OLFML2BQ68BL8 750 aa12.79□□□□□ -0.36
SHMT1-205ENST00000395684 NEPROQ6NW34 567 aa12.79□□□□□ -0.36
SHMT1-205ENST00000395684 ALDH16A1Q8IZ83 802 aa12.79□□□□□ -0.36
SHMT1-205ENST00000395684 ATPAF2Q8N5M1 289 aa12.79□□□□□ -0.36
SHMT1-205ENST00000395684 TSPAN18Q96SJ8 248 aa12.79□□□□□ -0.36
SHMT1-205ENST00000395684 CCT7Q99832 543 aa12.79□□□□□ -0.36
SHMT1-205ENST00000395684 TMEM79Q9BSE2 394 aa12.79□□□□□ -0.36
SHMT1-205ENST00000395684 OSBPL11Q9BXB4 747 aa12.79□□□□□ -0.36
SHMT1-205ENST00000395684 SLC39A8Q9C0K1 460 aa12.79□□□□□ -0.36
SHMT1-205ENST00000395684 TSPYL2Q9H2G4 693 aaPredicted RBP12.79□□□□□ -0.36
SHMT1-205ENST00000395684 GALNT8Q9NY28 637 aa12.79□□□□□ -0.36
SHMT1-205ENST00000395684 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.79□□□□□ -0.36
SHMT1-205ENST00000395684 TMEM181Q9P2C4 612 aa12.79□□□□□ -0.36
SHMT1-205ENST00000395684 ATP6AP2A0A1C7CYW4 349 aa12.79□□□□□ -0.36
SHMT1-205ENST00000395684 DYNC1LI2O43237 492 aaPredicted RBP12.79□□□□□ -0.36
SHMT1-205ENST00000395684 ATP6AP2O75787 350 aa12.79□□□□□ -0.36
SHMT1-205ENST00000395684 HLA-DQB2P05538 268 aa12.79□□□□□ -0.36
SHMT1-205ENST00000395684 ZNF23P17027 643 aa12.79□□□□□ -0.36
SHMT1-205ENST00000395684 ADRM1Q16186 407 aa12.79□□□□□ -0.36
SHMT1-205ENST00000395684 FAM83EQ2M2I3 478 aa12.79□□□□□ -0.36
SHMT1-205ENST00000395684 CLEC6AQ6EIG7 209 aa12.79□□□□□ -0.36
SHMT1-205ENST00000395684 C8orf82Q6P1X6 216 aaPredicted RBP12.79□□□□□ -0.36
SHMT1-205ENST00000395684 RANBP10Q6VN20 620 aa12.79□□□□□ -0.36
SHMT1-205ENST00000395684 TRIML2Q8N7C3 387 aa12.79□□□□□ -0.36
SHMT1-205ENST00000395684 ANKRD49Q8WVL7 239 aa12.79□□□□□ -0.36
SHMT1-205ENST00000395684 CDCA5Q96FF9 252 aa12.79□□□□□ -0.36
SHMT1-205ENST00000395684 DUS3LQ96G46 650 aaKnown RBP12.79□□□□□ -0.36
SHMT1-205ENST00000395684 MRGPRX2Q96LB1 330 aa12.79□□□□□ -0.36
SHMT1-205ENST00000395684 UHRF1Q96T88 793 aaPredicted RBP12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms