RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 TM6SF2Q9BZW4 377 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 TAS2R1Q9NYW7 299 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 MTRRQ9UBK8 725 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 YIPF1Q9Y548 306 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 G3V2L1 256 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 DCXO43602 365 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 TBC1D4O60343 1298 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 STC2O76061 302 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 C1RP00736 705 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 CKMP06732 381 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 MMP2P08253 660 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 HDCP19113 662 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 ABL2P42684 1182 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 IL10RBQ08334 325 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 PARP15Q460N3 678 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 TMCO4Q5TGY1 634 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 AFMIDQ63HM1 303 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 SLC8B1Q6J4K2 584 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 BBS5Q8N3I7 341 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 TDRD5Q8NAT2 981 aaKnown RBP11.22□□□□□ -0.61
TCOF1-203ENST00000394269 LPCAT1Q8NF37 534 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 ARRDC2Q8TBH0 407 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 DTX3LQ8TDB6 740 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 HEXDCQ8WVB3 486 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 MARK4Q96L34 752 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 TMEM175Q9BSA9 504 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 THTPAQ9BU02 230 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 OSBPL1AQ9BXW6 950 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 CADM1Q9BY67 442 aaKnown RBP11.22□□□□□ -0.61
TCOF1-203ENST00000394269 LRMDAQ9H2I8 198 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 FAM96AQ9H5X1 160 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 COG4Q9H9E3 785 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 PAK6Q9NQU5 681 aaPredicted RBP11.22□□□□□ -0.61
TCOF1-203ENST00000394269 GTSE1Q9NYZ3 720 aa11.22□□□□□ -0.61
TCOF1-203ENST00000394269 UBA2Q9UBT2 640 aaPredicted RBP11.22□□□□□ -0.61
TCOF1-203ENST00000394269 AGO1Q9UL18 857 aaKnown RBP11.22□□□□□ -0.61
TCOF1-203ENST00000394269 FAM92AA1XBS5 289 aa11.21□□□□□ -0.61
TCOF1-203ENST00000394269 PIGNO95427 931 aa11.21□□□□□ -0.61
TCOF1-203ENST00000394269 PDHA1P08559 390 aa11.21□□□□□ -0.61
TCOF1-203ENST00000394269 RAG1P15918 1043 aa11.21□□□□□ -0.61
TCOF1-203ENST00000394269 GRK2P25098 689 aa11.21□□□□□ -0.61
TCOF1-203ENST00000394269 ITGB8P26012 769 aa11.21□□□□□ -0.61
TCOF1-203ENST00000394269 EPHA3P29320 983 aa11.21□□□□□ -0.61
TCOF1-203ENST00000394269 CYP4F8P98187 520 aa11.21□□□□□ -0.61
TCOF1-203ENST00000394269 CCDC6Q16204 474 aa11.21□□□□□ -0.61
TCOF1-203ENST00000394269 ARL13AQ5H913 290 aaPredicted RBP11.21□□□□□ -0.61
TCOF1-203ENST00000394269 RABGAP1LQ5R372 815 aa11.21□□□□□ -0.61
TCOF1-203ENST00000394269 FAM161BQ96MY7 647 aa11.21□□□□□ -0.61
TCOF1-203ENST00000394269 SORT1Q99523 831 aa11.21□□□□□ -0.61
TCOF1-203ENST00000394269 BTBD10Q9BSF8 475 aa11.21□□□□□ -0.61
TCOF1-203ENST00000394269 SMG9Q9H0W8 520 aaKnown RBP11.21□□□□□ -0.61
TCOF1-203ENST00000394269 CWH43Q9H720 699 aa11.21□□□□□ -0.61
TCOF1-203ENST00000394269 MKS1Q9NXB0 559 aa11.21□□□□□ -0.61
TCOF1-203ENST00000394269 IL37Q9NZH6 218 aa11.21□□□□□ -0.61
TCOF1-203ENST00000394269 VPS28Q9UK41 221 aa11.21□□□□□ -0.61
TCOF1-203ENST00000394269 FAM50BQ9Y247 325 aa11.21□□□□□ -0.61
TCOF1-203ENST00000394269 TSC2P49815 1807 aa11.21□□□□□ -0.61
TCOF1-203ENST00000394269 EIF4E1BA6NMX2 242 aaKnown RBP11.21□□□□□ -0.62
TCOF1-203ENST00000394269 CACNG3O60359 315 aa11.21□□□□□ -0.62
TCOF1-203ENST00000394269 TBL1XO60907 577 aa11.21□□□□□ -0.62
TCOF1-203ENST00000394269 HMGA1P17096 107 aaKnown RBP11.21□□□□□ -0.62
TCOF1-203ENST00000394269 PGM1P36871 562 aa11.21□□□□□ -0.62
TCOF1-203ENST00000394269 GTF2A1P52655 376 aaPredicted RBP11.21□□□□□ -0.62
TCOF1-203ENST00000394269 DLG1Q12959 904 aa11.21□□□□□ -0.62
TCOF1-203ENST00000394269 INSCQ1MX18 579 aa11.21□□□□□ -0.62
TCOF1-203ENST00000394269 FSCBQ5H9T9 825 aa11.21□□□□□ -0.62
TCOF1-203ENST00000394269 CENPLQ8N0S6 344 aaPredicted RBP11.21□□□□□ -0.62
TCOF1-203ENST00000394269 TEX9Q8N6V9 391 aa11.21□□□□□ -0.62
TCOF1-203ENST00000394269 HIPK4Q8NE63 616 aa11.21□□□□□ -0.62
TCOF1-203ENST00000394269 SH3RF2Q8TEC5 729 aa11.21□□□□□ -0.62
TCOF1-203ENST00000394269 OLFM1Q99784 485 aa11.21□□□□□ -0.62
TCOF1-203ENST00000394269 AFF4Q9UHB7 1163 aaKnown RBP11.21□□□□□ -0.62
TCOF1-203ENST00000394269 PACSIN3Q9UKS6 424 aa11.21□□□□□ -0.62
TCOF1-203ENST00000394269 TMEM233B4DJY2 109 aa11.21□□□□□ -0.62
TCOF1-203ENST00000394269 PRAMEF11O60813 436 aa11.21□□□□□ -0.62
TCOF1-203ENST00000394269 SKAP2O75563 359 aaPredicted RBP11.21□□□□□ -0.62
TCOF1-203ENST00000394269 SERPINB5P36952 375 aa11.21□□□□□ -0.62
TCOF1-203ENST00000394269 KPNA1P52294 538 aaPredicted RBP11.21□□□□□ -0.62
TCOF1-203ENST00000394269 SLC25A3Q00325 362 aa11.21□□□□□ -0.62
TCOF1-203ENST00000394269 SEMG2Q02383 582 aa11.21□□□□□ -0.62
TCOF1-203ENST00000394269 CBLBQ13191 982 aa11.21□□□□□ -0.62
TCOF1-203ENST00000394269 SPDYAQ5MJ70 313 aa11.21□□□□□ -0.62
TCOF1-203ENST00000394269 GPR158Q5T848 1215 aa11.21□□□□□ -0.62
TCOF1-203ENST00000394269 TMC7Q7Z402 723 aa11.21□□□□□ -0.62
TCOF1-203ENST00000394269 SUGP1Q8IWZ8 645 aaKnown RBP11.21□□□□□ -0.62
TCOF1-203ENST00000394269 OR13J1Q8NGT2 312 aa11.21□□□□□ -0.62
TCOF1-203ENST00000394269 DDI1Q8WTU0 396 aa11.21□□□□□ -0.62
TCOF1-203ENST00000394269 SARS2Q9NP81 518 aaKnown RBP11.21□□□□□ -0.62
TCOF1-203ENST00000394269 VPS45Q9NRW7 570 aa11.21□□□□□ -0.62
TCOF1-203ENST00000394269 NSMCE4AQ9NXX6 385 aa11.21□□□□□ -0.62
TCOF1-203ENST00000394269 IGLV3-10A0A075B6K4 115 aa11.2□□□□□ -0.62
TCOF1-203ENST00000394269 DRGXA6NNA5 263 aa11.2□□□□□ -0.62
TCOF1-203ENST00000394269 WASH4PA8MWX3 477 aa11.2□□□□□ -0.62
TCOF1-203ENST00000394269 CALB2P22676 271 aa11.2□□□□□ -0.62
TCOF1-203ENST00000394269 MZF1P28698 734 aaPredicted RBP11.2□□□□□ -0.62
TCOF1-203ENST00000394269 IDH3AP50213 366 aa11.2□□□□□ -0.62
TCOF1-203ENST00000394269 EPHB1P54762 984 aa11.2□□□□□ -0.62
TCOF1-203ENST00000394269 GEN1Q17RS7 908 aa11.2□□□□□ -0.62
TCOF1-203ENST00000394269 ACCSLQ4AC99 568 aa11.2□□□□□ -0.62
TCOF1-203ENST00000394269 SLC9B1Q4ZJI4 515 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms