RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 UGT1A6P19224 532 aa11.24□□□□□ -0.61
CUX1-204ENST00000393824 UGT1A1P22309 533 aa11.24□□□□□ -0.61
CUX1-204ENST00000393824 UGT1A4P22310 534 aa11.24□□□□□ -0.61
CUX1-204ENST00000393824 UGT1A3P35503 534 aa11.24□□□□□ -0.61
CUX1-204ENST00000393824 UGT1A5P35504 534 aa11.24□□□□□ -0.61
CUX1-204ENST00000393824 MSX2P35548 267 aaPredicted RBP11.24□□□□□ -0.61
CUX1-204ENST00000393824 SERPINB5P36952 375 aa11.24□□□□□ -0.61
CUX1-204ENST00000393824 CDH15P55291 814 aa11.24□□□□□ -0.61
CUX1-204ENST00000393824 PDK2Q15119 407 aa11.24□□□□□ -0.61
CUX1-204ENST00000393824 NHSL2Q5HYW2 709 aa11.24□□□□□ -0.61
CUX1-204ENST00000393824 IL23RQ5VWK5 629 aa11.24□□□□□ -0.61
CUX1-204ENST00000393824 WSCD1Q658N2 575 aa11.24□□□□□ -0.61
CUX1-204ENST00000393824 DPH6Q7L8W6 267 aa11.24□□□□□ -0.61
CUX1-204ENST00000393824 XYLT1Q86Y38 959 aa11.24□□□□□ -0.61
CUX1-204ENST00000393824 COLGALT2Q8IYK4 626 aa11.24□□□□□ -0.61
CUX1-204ENST00000393824 HACE1Q8IYU2 909 aa11.24□□□□□ -0.61
CUX1-204ENST00000393824 CPSF7Q8N684 471 aaKnown RBP11.24□□□□□ -0.61
CUX1-204ENST00000393824 TRUB1Q8WWH5 349 aaKnown RBP11.24□□□□□ -0.61
CUX1-204ENST00000393824 MCRS1Q96EZ8 462 aa11.24□□□□□ -0.61
CUX1-204ENST00000393824 B3GALT6Q96L58 329 aa11.24□□□□□ -0.61
CUX1-204ENST00000393824 ARMC7Q9H6L4 198 aa11.24□□□□□ -0.61
CUX1-204ENST00000393824 TCF7L2Q9NQB0 619 aa11.24□□□□□ -0.61
CUX1-204ENST00000393824 GIN1Q9NXP7 522 aa11.24□□□□□ -0.61
CUX1-204ENST00000393824 TSC22D4Q9Y3Q8 395 aa11.24□□□□□ -0.61
CUX1-204ENST00000393824 PCDHB7Q9Y5E2 793 aa11.24□□□□□ -0.61
CUX1-204ENST00000393824 PCDHA11Q9Y5I1 949 aa11.24□□□□□ -0.61
CUX1-204ENST00000393824 SLC30A1Q9Y6M5 507 aa11.24□□□□□ -0.61
CUX1-204ENST00000393824 H3BMQ9 156 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 H7C0C1 242 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 CNOT3O75175 753 aaKnown RBP11.23□□□□□ -0.61
CUX1-204ENST00000393824 TADA2AO75478 443 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 P4HA1P13674 534 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 TPSB2P20231 275 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 DPP6P42658 865 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 ATP5OP48047 213 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 TAF6P49848 677 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 BMXP51813 675 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 PKNOX1P55347 436 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 BCAR1P56945 870 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 INCA1Q0VD86 236 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 TUSC3Q13454 348 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 NAB1Q13506 487 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 HERC3Q15034 1050 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 TPSAB1Q15661 275 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 CNKSR3Q6P9H4 555 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 LIMS2Q7Z4I7 341 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 ACOT1Q86TX2 421 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 ZNF354CQ86Y25 554 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 MAPK15Q8TD08 544 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 DEPDC1BQ8WUY9 529 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 BCL7CQ8WUZ0 217 aaPredicted RBP11.23□□□□□ -0.61
CUX1-204ENST00000393824 CLIP3Q96DZ5 547 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 DUS3LQ96G46 650 aaKnown RBP11.23□□□□□ -0.61
CUX1-204ENST00000393824 COG8Q96MW5 612 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 UHRF1Q96T88 793 aaPredicted RBP11.23□□□□□ -0.61
CUX1-204ENST00000393824 CALN1Q9BXU9 219 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 UNKQ9C0B0 810 aaKnown RBP11.23□□□□□ -0.61
CUX1-204ENST00000393824 WDR41Q9HAD4 459 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 CXorf21Q9HAI6 301 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 DUS2Q9NX74 493 aaKnown RBP11.23□□□□□ -0.61
CUX1-204ENST00000393824 TJP2Q9UDY2 1190 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 ERGIC3Q9Y282 383 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 ZNF487B1APH4 448 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 TPP1O14773 563 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 HTRA2O43464 458 aaPredicted RBP11.23□□□□□ -0.61
CUX1-204ENST00000393824 ALDH1A2O94788 518 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 OXSR1O95747 527 aaPredicted RBP11.23□□□□□ -0.61
CUX1-204ENST00000393824 NELFEP18615 380 aaKnown RBP11.23□□□□□ -0.61
CUX1-204ENST00000393824 PSMD8P48556 350 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 EIF2B2P49770 351 aaKnown RBP11.23□□□□□ -0.61
CUX1-204ENST00000393824 ZNF143P52747 638 aaPredicted RBP11.23□□□□□ -0.61
CUX1-204ENST00000393824 GALNT2Q10471 571 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 RGS21Q2M5E4 152 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 XKR5Q6UX68 686 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 MYO1HQ8N1T3 1032 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 ZNF781Q8N8C0 355 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 PCYOX1LQ8NBM8 494 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 STON2Q8WXE9 905 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 TFAP2CQ92754 450 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 TOP1MTQ969P6 601 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 ATP6V1E2Q96A05 226 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 ASB9Q96DX5 294 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 SENP8Q96LD8 212 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 RNF157Q96PX1 679 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 OR52B2Q96RD2 323 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 SLC29A1Q99808 456 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 OSBPL10Q9BXB5 764 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 FAM49BQ9NUQ9 324 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 GID8Q9NWU2 228 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 GDAP2Q9NXN4 497 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 NCKIPSDQ9NZQ3 722 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 CYTH4Q9UIA0 394 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 TRANK1O15050 2925 aa11.23□□□□□ -0.61
CUX1-204ENST00000393824 TDRD15B5MCY1 1934 aaKnown RBP11.22□□□□□ -0.61
CUX1-204ENST00000393824 TBKBP1A7MCY6 615 aa11.22□□□□□ -0.61
CUX1-204ENST00000393824 GIPC1O14908 333 aa11.22□□□□□ -0.61
CUX1-204ENST00000393824 STAMBPO95630 424 aa11.22□□□□□ -0.61
CUX1-204ENST00000393824 ERBB2P04626 1255 aa11.22□□□□□ -0.61
CUX1-204ENST00000393824 APRTP07741 180 aa11.22□□□□□ -0.61
CUX1-204ENST00000393824 MX2P20592 715 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms