RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 RGS9BPQ6ZS82 235 aa13.89□□□□□ -0.19
PTPRF-202ENST00000372405 PIGWQ7Z7B1 504 aa13.89□□□□□ -0.19
PTPRF-202ENST00000372405 CMC1Q7Z7K0 106 aa13.89□□□□□ -0.19
PTPRF-202ENST00000372405 ZC3HC1Q86WB0 502 aaKnown RBP13.89□□□□□ -0.19
PTPRF-202ENST00000372405 GDPD5Q8WTR4 605 aa13.89□□□□□ -0.19
PTPRF-202ENST00000372405 SPO11Q9Y5K1 396 aa13.89□□□□□ -0.19
PTPRF-202ENST00000372405 ARL5AQ9Y689 179 aa13.89□□□□□ -0.19
PTPRF-202ENST00000372405 WDR91A4D1P6 747 aa13.89□□□□□ -0.19
PTPRF-202ENST00000372405 SOBPA7XYQ1 873 aa13.89□□□□□ -0.19
PTPRF-202ENST00000372405 PENKP01210 267 aaPredicted RBP13.89□□□□□ -0.19
PTPRF-202ENST00000372405 BMP1P13497 986 aa13.89□□□□□ -0.19
PTPRF-202ENST00000372405 ALADP13716 330 aa13.89□□□□□ -0.19
PTPRF-202ENST00000372405 CRHR1P34998 444 aa13.89□□□□□ -0.19
PTPRF-202ENST00000372405 SLC1A2P43004 574 aa13.89□□□□□ -0.19
PTPRF-202ENST00000372405 CSRP3P50461 194 aa13.89□□□□□ -0.19
PTPRF-202ENST00000372405 PDE1BQ01064 536 aa13.89□□□□□ -0.19
PTPRF-202ENST00000372405 NSUN2Q08J23 767 aaKnown RBP eCLIP13.89□□□□□ -0.19
PTPRF-202ENST00000372405 SF3A3Q12874 501 aaKnown RBP eCLIP13.89□□□□□ -0.195e-6■■■■■ 39.5
PTPRF-202ENST00000372405 TRAF2Q12933 501 aa13.89□□□□□ -0.19
PTPRF-202ENST00000372405 USP4Q13107 963 aa13.89□□□□□ -0.19
PTPRF-202ENST00000372405 KCNC3Q14003 757 aa13.89□□□□□ -0.19
PTPRF-202ENST00000372405 ATXN7L2Q5T6C5 722 aaPredicted RBP13.89□□□□□ -0.19
PTPRF-202ENST00000372405 NCEH1Q6PIU2 408 aa13.89□□□□□ -0.19
PTPRF-202ENST00000372405 ARID3BQ8IVW6 561 aaPredicted RBP13.89□□□□□ -0.19
PTPRF-202ENST00000372405 PNPLA1Q8N8W4 532 aa13.89□□□□□ -0.19
PTPRF-202ENST00000372405 BLOC1S5Q8TDH9 187 aa13.89□□□□□ -0.19
PTPRF-202ENST00000372405 ACMSDQ8TDX5 336 aa13.89□□□□□ -0.19
PTPRF-202ENST00000372405 PTPRN2Q92932 1015 aa13.89□□□□□ -0.19
PTPRF-202ENST00000372405 VPS39Q96JC1 886 aa13.89□□□□□ -0.19
PTPRF-202ENST00000372405 LRRC3BQ96PB8 259 aa13.89□□□□□ -0.19
PTPRF-202ENST00000372405 C2orf49Q9BVC5 232 aaPredicted RBP13.89□□□□□ -0.19
PTPRF-202ENST00000372405 NKX2-4Q9H2Z4 354 aa13.89□□□□□ -0.19
PTPRF-202ENST00000372405 CAB39LQ9H9S4 337 aa13.89□□□□□ -0.19
PTPRF-202ENST00000372405 SNX15Q9NRS6 342 aa13.89□□□□□ -0.19
PTPRF-202ENST00000372405 HAUS2Q9NVX0 235 aa13.89□□□□□ -0.19
PTPRF-202ENST00000372405 PRDM4Q9UKN5 801 aa13.89□□□□□ -0.19
PTPRF-202ENST00000372405 RAI2Q9Y5P3 530 aa13.89□□□□□ -0.19
PTPRF-202ENST00000372405 MYO9BQ13459 2157 aa13.88□□□□□ -0.19
PTPRF-202ENST00000372405 SZT2Q5T011 3432 aa13.88□□□□□ -0.19
PTPRF-202ENST00000372405 AURKAO14965 403 aa13.88□□□□□ -0.19
PTPRF-202ENST00000372405 BUD23O43709 281 aaKnown RBP13.88□□□□□ -0.19
PTPRF-202ENST00000372405 ZNF821O75541 412 aaPredicted RBP13.88□□□□□ -0.19
PTPRF-202ENST00000372405 PAPLNO95428 1278 aa13.88□□□□□ -0.19
PTPRF-202ENST00000372405 CES1P23141 567 aa13.88□□□□□ -0.19
PTPRF-202ENST00000372405 NRIP1P48552 1158 aa13.88□□□□□ -0.19
PTPRF-202ENST00000372405 PGGT1BP53609 377 aa13.88□□□□□ -0.19
PTPRF-202ENST00000372405 ACVR1Q04771 509 aa13.88□□□□□ -0.19
PTPRF-202ENST00000372405 GRM3Q14832 879 aa13.88□□□□□ -0.19
PTPRF-202ENST00000372405 DLG2Q15700 870 aa13.88□□□□□ -0.19
PTPRF-202ENST00000372405 DUSP6Q16828 381 aa13.88□□□□□ -0.19
PTPRF-202ENST00000372405 ZNF470Q6ECI4 717 aa13.88□□□□□ -0.19
PTPRF-202ENST00000372405 TMC5Q6UXY8 1006 aa13.88□□□□□ -0.19
PTPRF-202ENST00000372405 MFSD6LQ8IWD5 586 aa13.88□□□□□ -0.19
PTPRF-202ENST00000372405 C2CD4AQ8NCU7 369 aaPredicted RBP13.88□□□□□ -0.19
PTPRF-202ENST00000372405 SMG7Q92540 1137 aaKnown RBP13.88□□□□□ -0.19
PTPRF-202ENST00000372405 SEC16BQ96JE7 1060 aa13.88□□□□□ -0.19
PTPRF-202ENST00000372405 VPS11Q9H270 941 aa13.88□□□□□ -0.19
PTPRF-202ENST00000372405 TLE6Q9H808 572 aa13.88□□□□□ -0.19
PTPRF-202ENST00000372405 SLCO1B3Q9NPD5 702 aa13.88□□□□□ -0.19
PTPRF-202ENST00000372405 KIAA1522Q9P206 1035 aaPredicted RBP13.88□□□□□ -0.19
PTPRF-202ENST00000372405 EMCNQ9ULC0 261 aa13.88□□□□□ -0.19
PTPRF-202ENST00000372405 GSRP00390 522 aa13.87□□□□□ -0.19
PTPRF-202ENST00000372405 PAMP19021 973 aa13.87□□□□□ -0.19
PTPRF-202ENST00000372405 CTSOP43234 321 aaPredicted RBP13.87□□□□□ -0.19
PTPRF-202ENST00000372405 SERPINB4P48594 390 aa13.87□□□□□ -0.19
PTPRF-202ENST00000372405 PLK1P53350 603 aa13.87□□□□□ -0.19
PTPRF-202ENST00000372405 RHOAP61586 193 aa13.87□□□□□ -0.19
PTPRF-202ENST00000372405 PTPRRQ15256 657 aa13.87□□□□□ -0.19
PTPRF-202ENST00000372405 SEPT7Q16181 437 aaKnown RBP13.87□□□□□ -0.19
PTPRF-202ENST00000372405 ZNF789Q5FWF6 425 aa13.87□□□□□ -0.19
PTPRF-202ENST00000372405 NEPROQ6NW34 567 aa13.87□□□□□ -0.19
PTPRF-202ENST00000372405 BRSK1Q8TDC3 778 aa13.87□□□□□ -0.19
PTPRF-202ENST00000372405 ZNF75CPQ92670 426 aaPredicted RBP13.87□□□□□ -0.19
PTPRF-202ENST00000372405 ACDQ96AP0 544 aa13.87□□□□□ -0.19
PTPRF-202ENST00000372405 VOPP1Q96AW1 172 aa13.87□□□□□ -0.19
PTPRF-202ENST00000372405 DNAJC1Q96KC8 554 aaKnown RBP13.87□□□□□ -0.19
PTPRF-202ENST00000372405 GPR22Q99680 433 aa13.87□□□□□ -0.19
PTPRF-202ENST00000372405 ELAC2Q9BQ52 826 aaKnown RBP13.87□□□□□ -0.19
PTPRF-202ENST00000372405 TM6SF2Q9BZW4 377 aa13.87□□□□□ -0.19
PTPRF-202ENST00000372405 RHOJQ9H4E5 214 aa13.87□□□□□ -0.19
PTPRF-202ENST00000372405 ABCB8Q9NUT2 735 aa13.87□□□□□ -0.19
PTPRF-202ENST00000372405 NSMCE4AQ9NXX6 385 aa13.87□□□□□ -0.19
PTPRF-202ENST00000372405 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.87□□□□□ -0.191e-7■■■□□ 18.6
PTPRF-202ENST00000372405 DPP7Q9UHL4 492 aa13.87□□□□□ -0.19
PTPRF-202ENST00000372405 MRPS23Q9Y3D9 190 aaKnown RBP13.87□□□□□ -0.19
PTPRF-202ENST00000372405 ARIH1Q9Y4X5 557 aaPredicted RBP13.87□□□□□ -0.19
PTPRF-202ENST00000372405 OR51F1A6NGY5 319 aa13.87□□□□□ -0.19
PTPRF-202ENST00000372405 NEDD8-MDP1E9PL57 170 aa13.87□□□□□ -0.19
PTPRF-202ENST00000372405 TIMM44O43615 452 aa13.87□□□□□ -0.19
PTPRF-202ENST00000372405 CYBBP04839 570 aa13.87□□□□□ -0.19
PTPRF-202ENST00000372405 TCF3P15923 654 aa13.87□□□□□ -0.19
PTPRF-202ENST00000372405 TYK2P29597 1187 aa13.87□□□□□ -0.19
PTPRF-202ENST00000372405 FUT11Q495W5 492 aa13.87□□□□□ -0.19
PTPRF-202ENST00000372405 PITRM1Q5JRX3 1037 aa13.87□□□□□ -0.19
PTPRF-202ENST00000372405 GKAP1Q5VSY0 366 aaPredicted RBP13.87□□□□□ -0.19
PTPRF-202ENST00000372405 RETSATQ6NUM9 610 aa13.87□□□□□ -0.19
PTPRF-202ENST00000372405 FAM47EQ6ZV65 393 aa13.87□□□□□ -0.19
PTPRF-202ENST00000372405 ARMC2Q8NEN0 867 aa13.87□□□□□ -0.19
PTPRF-202ENST00000372405 MDGA1Q8NFP4 955 aa13.87□□□□□ -0.19
PTPRF-202ENST00000372405 OR13C4Q8NGS5 318 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms