RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 UMPSP11172 480 aa11.66□□□□□ -0.54
SYNE1-204ENST00000367248 TFEBP19484 476 aa11.66□□□□□ -0.54
SYNE1-204ENST00000367248 GJA9P57773 515 aa11.66□□□□□ -0.54
SYNE1-204ENST00000367248 VITQ6UXI7 678 aa11.66□□□□□ -0.54
SYNE1-204ENST00000367248 FAM126BQ8IXS8 530 aa11.66□□□□□ -0.54
SYNE1-204ENST00000367248 MREGQ8N565 214 aa11.66□□□□□ -0.54
SYNE1-204ENST00000367248 POLMQ9NP87 494 aaPredicted RBP11.66□□□□□ -0.54
SYNE1-204ENST00000367248 HBS1LQ9Y450 684 aaKnown RBP11.66□□□□□ -0.54
SYNE1-204ENST00000367248 A0A1B0GVM2 712 aa11.66□□□□□ -0.54
SYNE1-204ENST00000367248 TCAF2A6NFQ2 919 aa11.66□□□□□ -0.54
SYNE1-204ENST00000367248 DDX3YO15523 660 aaKnown RBP11.66□□□□□ -0.54
SYNE1-204ENST00000367248 OR10H2O60403 315 aa11.66□□□□□ -0.54
SYNE1-204ENST00000367248 BANF1O75531 89 aa11.66□□□□□ -0.54
SYNE1-204ENST00000367248 RPL14P50914 215 aaKnown RBP11.66□□□□□ -0.54
SYNE1-204ENST00000367248 PURAQ00577 322 aaKnown RBP11.66□□□□□ -0.54
SYNE1-204ENST00000367248 DSELQ8IZU8 1212 aa11.66□□□□□ -0.54
SYNE1-204ENST00000367248 ZNF366Q8N895 744 aa11.66□□□□□ -0.54
SYNE1-204ENST00000367248 ZNF75CPQ92670 426 aaPredicted RBP11.66□□□□□ -0.54
SYNE1-204ENST00000367248 NKD2Q969F2 451 aaPredicted RBP11.66□□□□□ -0.54
SYNE1-204ENST00000367248 KCTD15Q96SI1 283 aaPredicted RBP11.66□□□□□ -0.54
SYNE1-204ENST00000367248 LPIN3Q9BQK8 851 aa11.66□□□□□ -0.54
SYNE1-204ENST00000367248 SIKE1Q9BRV8 207 aa11.66□□□□□ -0.54
SYNE1-204ENST00000367248 ATP6V1HQ9UI12 483 aa11.66□□□□□ -0.54
SYNE1-204ENST00000367248 PDE4DIPQ5VU43 2346 aa11.66□□□□□ -0.54
SYNE1-204ENST00000367248 CPED1A4D0V7 1026 aa11.66□□□□□ -0.54
SYNE1-204ENST00000367248 E9PAM4 449 aa11.66□□□□□ -0.54
SYNE1-204ENST00000367248 VNN1O95497 513 aa11.66□□□□□ -0.54
SYNE1-204ENST00000367248 RPA3P35244 121 aaPredicted RBP11.66□□□□□ -0.54
SYNE1-204ENST00000367248 COMMD2Q86X83 199 aa11.66□□□□□ -0.54
SYNE1-204ENST00000367248 HID1Q8IV36 788 aa11.66□□□□□ -0.54
SYNE1-204ENST00000367248 TMEM192Q8IY95 271 aa11.66□□□□□ -0.54
SYNE1-204ENST00000367248 KYQ8NBH2 561 aa11.66□□□□□ -0.54
SYNE1-204ENST00000367248 SETD7Q8WTS6 366 aaKnown RBP11.66□□□□□ -0.54
SYNE1-204ENST00000367248 AGO3Q9H9G7 860 aaKnown RBP11.66□□□□□ -0.54
SYNE1-204ENST00000367248 ELOVL2Q9NXB9 296 aa11.66□□□□□ -0.54
SYNE1-204ENST00000367248 CHKBQ9Y259 395 aa11.66□□□□□ -0.54
SYNE1-204ENST00000367248 INVSQ9Y283 1065 aa11.66□□□□□ -0.54
SYNE1-204ENST00000367248 POLR1DQ9Y2S0 133 aa11.66□□□□□ -0.54
SYNE1-204ENST00000367248 C2CD4BA6NLJ0 364 aa11.65□□□□□ -0.54
SYNE1-204ENST00000367248 VPS4BO75351 444 aa11.65□□□□□ -0.54
SYNE1-204ENST00000367248 ATP6V1C1P21283 382 aa11.65□□□□□ -0.54
SYNE1-204ENST00000367248 ASPAP45381 313 aa11.65□□□□□ -0.54
SYNE1-204ENST00000367248 TAF5Q15542 800 aa11.65□□□□□ -0.54
SYNE1-204ENST00000367248 PFKFB4Q16877 469 aa11.65□□□□□ -0.54
SYNE1-204ENST00000367248 TMCO2Q7Z6W1 182 aaPredicted RBP11.65□□□□□ -0.54
SYNE1-204ENST00000367248 DNAJC9Q8WXX5 260 aa11.65□□□□□ -0.54
SYNE1-204ENST00000367248 USP7Q93009 1102 aa11.65□□□□□ -0.54
SYNE1-204ENST00000367248 HDAC10Q969S8 669 aa11.65□□□□□ -0.54
SYNE1-204ENST00000367248 GFM2Q969S9 779 aaKnown RBP11.65□□□□□ -0.54
SYNE1-204ENST00000367248 NACC2Q96BF6 587 aa11.65□□□□□ -0.54
SYNE1-204ENST00000367248 SLC9A7Q96T83 725 aa11.65□□□□□ -0.54
SYNE1-204ENST00000367248 NDNQ99608 321 aa11.65□□□□□ -0.54
SYNE1-204ENST00000367248 RHOBTB2Q9BYZ6 727 aa11.65□□□□□ -0.54
SYNE1-204ENST00000367248 SIX2Q9NPC8 291 aa11.65□□□□□ -0.54
SYNE1-204ENST00000367248 GPR135Q8IZ08 494 aa11.65□□□□□ -0.54
SYNE1-204ENST00000367248 CENPLQ8N0S6 344 aaPredicted RBP11.65□□□□□ -0.54
SYNE1-204ENST00000367248 STX19Q8N4C7 294 aa11.65□□□□□ -0.54
SYNE1-204ENST00000367248 HDDC3Q8N4P3 179 aa11.65□□□□□ -0.54
SYNE1-204ENST00000367248 RIN3Q8TB24 985 aa11.65□□□□□ -0.54
SYNE1-204ENST00000367248 MYCBPQ99417 103 aaPredicted RBP11.65□□□□□ -0.54
SYNE1-204ENST00000367248 ADGRA3Q8IWK6 1321 aa11.65□□□□□ -0.54
SYNE1-204ENST00000367248 MRASO14807 208 aa11.65□□□□□ -0.54
SYNE1-204ENST00000367248 SNAI1O95863 264 aaPredicted RBP11.65□□□□□ -0.54
SYNE1-204ENST00000367248 SKP1P63208 163 aa11.65□□□□□ -0.54
SYNE1-204ENST00000367248 VAC14Q08AM6 782 aa11.65□□□□□ -0.54
SYNE1-204ENST00000367248 TRIM32Q13049 653 aa11.65□□□□□ -0.54
SYNE1-204ENST00000367248 FBXL18Q96ME1 805 aa11.65□□□□□ -0.54
SYNE1-204ENST00000367248 TTYH3Q9C0H2 523 aa11.65□□□□□ -0.54
SYNE1-204ENST00000367248 AXIN1O15169 862 aa11.65□□□□□ -0.54
SYNE1-204ENST00000367248 FTH1P02794 183 aa11.65□□□□□ -0.54
SYNE1-204ENST00000367248 ATP6V0D1P61421 351 aa11.65□□□□□ -0.54
SYNE1-204ENST00000367248 SPIDRQ14159 915 aa11.65□□□□□ -0.54
SYNE1-204ENST00000367248 SCUBE1Q8IWY4 988 aa11.65□□□□□ -0.54
SYNE1-204ENST00000367248 UBE2E3Q969T4 207 aa11.65□□□□□ -0.54
SYNE1-204ENST00000367248 PPP1R14AQ96A00 147 aa11.65□□□□□ -0.54
SYNE1-204ENST00000367248 OXNAD1Q96HP4 312 aaPredicted RBP11.65□□□□□ -0.54
SYNE1-204ENST00000367248 BTBD9Q96Q07 612 aa11.65□□□□□ -0.54
SYNE1-204ENST00000367248 TMCC3Q9ULS5 477 aa11.65□□□□□ -0.54
SYNE1-204ENST00000367248 STARD13Q9Y3M8 1113 aa11.65□□□□□ -0.54
SYNE1-204ENST00000367248 KCNU1A8MYU2 1149 aa11.65□□□□□ -0.55
SYNE1-204ENST00000367248 ITGA2BP08514 1039 aa11.65□□□□□ -0.55
SYNE1-204ENST00000367248 NUDT17P0C025 328 aa11.65□□□□□ -0.55
SYNE1-204ENST00000367248 PTPN4P29074 926 aa11.65□□□□□ -0.55
SYNE1-204ENST00000367248 GNA12Q03113 381 aa11.65□□□□□ -0.55
SYNE1-204ENST00000367248 PTP4A2Q12974 167 aa11.65□□□□□ -0.55
SYNE1-204ENST00000367248 CTBP1Q13363 440 aa11.65□□□□□ -0.55
SYNE1-204ENST00000367248 FAM187BQ17R55 369 aa11.65□□□□□ -0.55
SYNE1-204ENST00000367248 AP5B1Q2VPB7 878 aa11.65□□□□□ -0.55
SYNE1-204ENST00000367248 CNKSR3Q6P9H4 555 aa11.65□□□□□ -0.55
SYNE1-204ENST00000367248 GRASPQ7Z6J2 395 aaPredicted RBP11.65□□□□□ -0.55
SYNE1-204ENST00000367248 ZSCAN2Q7Z7L9 614 aaPredicted RBP11.65□□□□□ -0.55
SYNE1-204ENST00000367248 ADAMTSL2Q86TH1 951 aa11.65□□□□□ -0.55
SYNE1-204ENST00000367248 OR4L1Q8NH43 312 aa11.65□□□□□ -0.55
SYNE1-204ENST00000367248 ACMSDQ8TDX5 336 aa11.65□□□□□ -0.55
SYNE1-204ENST00000367248 SLC40A1Q9NP59 571 aa11.65□□□□□ -0.55
SYNE1-204ENST00000367248 TLL2Q9Y6L7 1015 aa11.65□□□□□ -0.55
SYNE1-204ENST00000367248 A0A088AWK7 358 aa11.64□□□□□ -0.55
SYNE1-204ENST00000367248 YJEFN3A6XGL0 299 aa11.64□□□□□ -0.55
SYNE1-204ENST00000367248 E7ENQ6 273 aa11.64□□□□□ -0.55
SYNE1-204ENST00000367248 LCA5LO95447 670 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms