RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 TCEAL5Q5H9L2 206 aa13.3□□□□□ -0.28
SQSTM1-201ENST00000360718 MARC1Q5VT66 337 aa13.3□□□□□ -0.28
SQSTM1-201ENST00000360718 FAM217AQ8IXS0 508 aa13.3□□□□□ -0.28
SQSTM1-201ENST00000360718 KIRREL3Q8IZU9 778 aa13.3□□□□□ -0.28
SQSTM1-201ENST00000360718 TTC8Q8TAM2 541 aa13.3□□□□□ -0.28
SQSTM1-201ENST00000360718 E2F7Q96AV8 911 aa13.3□□□□□ -0.28
SQSTM1-201ENST00000360718 MIPEPQ99797 713 aa13.3□□□□□ -0.28
SQSTM1-201ENST00000360718 SFXN1Q9H9B4 322 aa13.3□□□□□ -0.28
SQSTM1-201ENST00000360718 CORO1CQ9ULV4 474 aaPredicted RBP13.3□□□□□ -0.28
SQSTM1-201ENST00000360718 AAR2Q9Y312 384 aaKnown RBP13.3□□□□□ -0.28
SQSTM1-201ENST00000360718 SPTBN5Q9NRC6 3674 aaKnown RBP13.3□□□□□ -0.28
SQSTM1-201ENST00000360718 E2F8A0AVK6 867 aa13.3□□□□□ -0.28
SQSTM1-201ENST00000360718 H0Y626 953 aa13.3□□□□□ -0.28
SQSTM1-201ENST00000360718 AVILO75366 819 aa13.3□□□□□ -0.28
SQSTM1-201ENST00000360718 C1QAP02745 245 aa13.3□□□□□ -0.28
SQSTM1-201ENST00000360718 MLNP12872 115 aa13.3□□□□□ -0.28
SQSTM1-201ENST00000360718 ACADSP16219 412 aa13.3□□□□□ -0.28
SQSTM1-201ENST00000360718 GRIA1P42261 906 aa13.3□□□□□ -0.28
SQSTM1-201ENST00000360718 PRPF39Q86UA1 669 aaKnown RBP13.3□□□□□ -0.28
SQSTM1-201ENST00000360718 CPXM2Q8N436 756 aa13.3□□□□□ -0.28
SQSTM1-201ENST00000360718 WFDC5Q8TCV5 224 aa13.3□□□□□ -0.28
SQSTM1-201ENST00000360718 STMN2Q93045 179 aa13.3□□□□□ -0.28
SQSTM1-201ENST00000360718 GLOD4Q9HC38 313 aa13.3□□□□□ -0.28
SQSTM1-201ENST00000360718 TDP1Q9NUW8 608 aa13.3□□□□□ -0.28
SQSTM1-201ENST00000360718 DZANK1Q9NVP4 752 aa13.3□□□□□ -0.28
SQSTM1-201ENST00000360718 ACTL7AQ9Y615 435 aa13.3□□□□□ -0.28
SQSTM1-201ENST00000360718 H0Y3Z8 333 aa13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 FCHO1O14526 889 aa13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 AP2A1O95782 977 aa13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 CYBBP04839 570 aa13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 VHLP40337 213 aa13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 CCNFP41002 786 aa13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 TMPRSS15P98073 1019 aa13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 OLIG2Q13516 323 aa13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 MPPE1Q53F39 396 aa13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 FSCBQ5H9T9 825 aa13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 RARS2Q5T160 578 aaKnown RBP13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 CAPRIN2Q6IMN6 1127 aaKnown RBP13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 CXorf57Q6NSI4 855 aaKnown RBP13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 ZNF783Q6ZMS7 281 aa13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 ZNF534Q76KX8 674 aa13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 CAND1Q86VP6 1230 aaKnown RBP13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 NUDCD3Q8IVD9 361 aa13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 BBS5Q8N3I7 341 aa13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 CARNMT1Q8N4J0 409 aa13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 TDRD5Q8NAT2 981 aaKnown RBP13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 OR7D4Q8NG98 312 aa13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 DDI1Q8WTU0 396 aa13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 DNAJC9Q8WXX5 260 aa13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 SPON2Q9BUD6 331 aa13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 WWP1Q9H0M0 922 aa13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 MUC3BQ9H195 1237 aa13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 ZNF576Q9H609 170 aa13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 TBC1D30Q9Y2I9 924 aa13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 PRUNE2Q8WUY3 3088 aa13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 AP3B1O00203 1094 aa13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 BIRC5O15392 142 aa13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 PRAMEF11O60813 436 aa13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 SMNDC1O75940 238 aaKnown RBP eCLIP13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 GLDCP23378 1020 aa13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 CNTFP26441 200 aa13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 HOXD9P28356 352 aaPredicted RBP13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 OXCT1P55809 520 aa13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 CDH18Q13634 790 aa13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 TBCCQ15814 346 aa13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 MUM1Q2TAK8 710 aa13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 KHDC1Q4VXA5 237 aaKnown RBP13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 TRIM68Q6AZZ1 485 aa13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 LRRC8BQ6P9F7 803 aa13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 SYCE2Q6PIF2 218 aa13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 OTOP3Q7RTS5 596 aa13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 CRLF3Q8IUI8 442 aa13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 ARID3BQ8IVW6 561 aaPredicted RBP13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 APLFQ8IW19 511 aaPredicted RBP13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 ST13P5Q8NFI4 369 aaPredicted RBP13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 GSDMBQ8TAX9 411 aa13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 ZNF599Q96NL3 588 aa13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 LRRC3BQ96PB8 259 aa13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 FCRL5Q96RD9 977 aa13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 LRRC40Q9H9A6 602 aa13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 ATP13A1Q9HD20 1204 aa13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 FBXO6Q9NRD1 293 aaPredicted RBP13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 TAS2R1Q9NYW7 299 aa13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 PLK2Q9NYY3 685 aa13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 CLEC4EQ9ULY5 219 aa13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 BRWD1Q9NSI6 2320 aa13.29□□□□□ -0.28
SQSTM1-201ENST00000360718 HLA-DQB2P05538 268 aa13.28□□□□□ -0.28
SQSTM1-201ENST00000360718 GEMP55040 296 aa13.28□□□□□ -0.28
SQSTM1-201ENST00000360718 MRPS35P82673 323 aaKnown RBP13.28□□□□□ -0.28
SQSTM1-201ENST00000360718 ITKQ08881 620 aa13.28□□□□□ -0.28
SQSTM1-201ENST00000360718 SLC10A7Q0GE19 358 aa13.28□□□□□ -0.28
SQSTM1-201ENST00000360718 LBRQ14739 615 aaKnown RBP13.28□□□□□ -0.28
SQSTM1-201ENST00000360718 DBN1Q16643 649 aa13.28□□□□□ -0.28
SQSTM1-201ENST00000360718 TMCO4Q5TGY1 634 aa13.28□□□□□ -0.28
SQSTM1-201ENST00000360718 RNF219Q5W0B1 726 aaPredicted RBP13.28□□□□□ -0.28
SQSTM1-201ENST00000360718 NAPEPLDQ6IQ20 393 aa13.28□□□□□ -0.28
SQSTM1-201ENST00000360718 LINC00523Q86TU6 105 aa13.28□□□□□ -0.28
SQSTM1-201ENST00000360718 TMPRSS6Q8IU80 811 aa13.28□□□□□ -0.28
SQSTM1-201ENST00000360718 PPFIBP2Q8ND30 876 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms