RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 ITGA11Q9UKX5 1188 aa7.4□□□□□ -1.23
VPS13A-202ENST00000357409 C1orf167Q5SNV9 1468 aa7.4□□□□□ -1.23
VPS13A-202ENST00000357409 TRAPPC6AO75865 159 aa7.4□□□□□ -1.23
VPS13A-202ENST00000357409 APODP05090 189 aa7.4□□□□□ -1.23
VPS13A-202ENST00000357409 GDI2P50395 445 aaKnown RBP7.4□□□□□ -1.23
VPS13A-202ENST00000357409 CAMK1Q14012 370 aa7.4□□□□□ -1.23
VPS13A-202ENST00000357409 DLG2Q15700 870 aa7.4□□□□□ -1.23
VPS13A-202ENST00000357409 PLEKHG4Q58EX7 1191 aa7.4□□□□□ -1.23
VPS13A-202ENST00000357409 TMEM192Q8IY95 271 aa7.4□□□□□ -1.23
VPS13A-202ENST00000357409 FAM98AQ8NCA5 519 aaKnown RBP7.4□□□□□ -1.23
VPS13A-202ENST00000357409 RBBP8Q99708 897 aa7.4□□□□□ -1.23
VPS13A-202ENST00000357409 MAP4K5Q9Y4K4 846 aa7.4□□□□□ -1.23
VPS13A-202ENST00000357409 MAP3K4Q9Y6R4 1608 aa7.4□□□□□ -1.23
VPS13A-202ENST00000357409 ADH1AP07327 375 aa7.4□□□□□ -1.23
VPS13A-202ENST00000357409 ALPIP09923 528 aa7.4□□□□□ -1.23
VPS13A-202ENST00000357409 PPP2R2BQ00005 443 aa7.4□□□□□ -1.23
VPS13A-202ENST00000357409 CASP12Q6UXS9 341 aa7.4□□□□□ -1.23
VPS13A-202ENST00000357409 ZBTB49Q6ZSB9 765 aa7.4□□□□□ -1.23
VPS13A-202ENST00000357409 PSTKQ8IV42 348 aaKnown RBP7.4□□□□□ -1.23
VPS13A-202ENST00000357409 ATL1Q8WXF7 558 aa7.4□□□□□ -1.23
VPS13A-202ENST00000357409 ELOVL4Q9GZR5 314 aa7.4□□□□□ -1.23
VPS13A-202ENST00000357409 SLC40A1Q9NP59 571 aa7.4□□□□□ -1.23
VPS13A-202ENST00000357409 ZNF780BQ9Y6R6 833 aa7.4□□□□□ -1.23
VPS13A-202ENST00000357409 KDM6BO15054 1643 aa7.4□□□□□ -1.23
VPS13A-202ENST00000357409 DISP1Q96F81 1524 aa7.4□□□□□ -1.23
VPS13A-202ENST00000357409 GPR25O00155 361 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 SDC3O75056 442 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 UBOX5O94941 541 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 ARF4P18085 180 aaPredicted RBP7.39□□□□□ -1.23
VPS13A-202ENST00000357409 CXCR2P25025 360 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 MAPK8P45983 427 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 HSPB3Q12988 150 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 MAPK7Q13164 816 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 Q4G0T1 1027 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 ANKRD46Q86W74 232 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 SERPINB11Q96P15 392 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 VPS35Q96QK1 796 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 DNAJC18Q9H819 358 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 PNPOQ9NVS9 261 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 CROTQ9UKG9 612 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 SH3GLB1Q9Y371 365 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 DGKBQ9Y6T7 804 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 DISP2A7MBM2 1401 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 NRCAMQ92823 1304 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 BTN3A3O00478 584 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 LIN7AO14910 233 aaPredicted RBP7.39□□□□□ -1.23
VPS13A-202ENST00000357409 LATO43561 262 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 CDC40O60508 579 aaKnown RBP eCLIP7.39□□□□□ -1.233e-6■■■■□ 23
VPS13A-202ENST00000357409 CNOT3O75175 753 aaKnown RBP7.39□□□□□ -1.23
VPS13A-202ENST00000357409 LYPLA1O75608 230 aaPredicted RBP7.39□□□□□ -1.23
VPS13A-202ENST00000357409 CHRNA4P43681 627 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 POLR2LP62875 67 aaKnown RBP7.39□□□□□ -1.23
VPS13A-202ENST00000357409 DPYSL3Q14195 570 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 GRB14Q14449 540 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 PPM1JQ5JR12 505 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 ACO2Q99798 780 aaKnown RBP7.39□□□□□ -1.23
VPS13A-202ENST00000357409 SH3GL1Q99961 368 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 MEAF6Q9HAF1 191 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 PARPBPQ9NWS1 579 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 NMRK1Q9NWW6 199 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 DEC1Q9P2X7 70 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 TCRBV5S4A2TA0A5A2 114 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 NPEPPSL1A6NEC2 478 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 A6NL46 340 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 KPNA4O00629 521 aaPredicted RBP7.39□□□□□ -1.23
VPS13A-202ENST00000357409 THRAP10827 490 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 HLA-EP13747 358 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 IRAK1P51617 712 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 DSC2Q02487 901 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 CRHR2Q13324 411 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 AHI1Q8N157 1196 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 OR8D1Q8WZ84 308 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 NCSTNQ92542 709 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 WDR55Q9H6Y2 383 aaPredicted RBP7.39□□□□□ -1.23
VPS13A-202ENST00000357409 GIN1Q9NXP7 522 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP7.39□□□□□ -1.23
VPS13A-202ENST00000357409 ANXA5P08758 320 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 KRT16P08779 473 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 SLC35G4P0C7Q5 338 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 C8orf89P0DMQ9 161 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 KDELR1P24390 212 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 COPZ1P61923 177 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 PTPRCAPQ14761 206 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 PDZK1Q5T2W1 519 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 METTL21CQ5VZV1 264 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 ANO7Q6IWH7 933 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 GALNT10Q86SR1 603 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 SNX32Q86XE0 403 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 TRIM8Q9BZR9 551 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 FZD3Q9NPG1 666 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 CNGB3Q9NQW8 809 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 DNAJC28Q9NX36 388 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 SMG5Q9UPR3 1016 aaKnown RBP7.39□□□□□ -1.23
VPS13A-202ENST00000357409 TIMM8BQ9Y5J9 83 aaPredicted RBP7.39□□□□□ -1.23
VPS13A-202ENST00000357409 WNT6Q9Y6F9 365 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 MAGEA9P43362 315 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 SERPINH1P50454 418 aaKnown RBP7.39□□□□□ -1.23
VPS13A-202ENST00000357409 USP46P62068 366 aa7.39□□□□□ -1.23
VPS13A-202ENST00000357409 ZNF648Q5T619 568 aaPredicted RBP7.39□□□□□ -1.23
VPS13A-202ENST00000357409 RIOX2Q8IUF8 465 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms