RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 SDHAF4Q5VUM1 108 aa22.3■■□□□ 1.16
UPF3A-201ENST00000351487 PGAM4Q8N0Y7 254 aa22.3■■□□□ 1.16
UPF3A-201ENST00000351487 TADA1Q96BN2 335 aa22.3■■□□□ 1.16
UPF3A-201ENST00000351487 TSPAN17Q96FV3 270 aa22.3■■□□□ 1.16
UPF3A-201ENST00000351487 UNKQ9C0B0 810 aaKnown RBP22.3■■□□□ 1.16
UPF3A-201ENST00000351487 ARHGAP39Q9C0H5 1083 aa22.3■■□□□ 1.16
UPF3A-201ENST00000351487 TRMT13Q9NUP7 481 aaKnown RBP22.3■■□□□ 1.16
UPF3A-201ENST00000351487 CASP8AP2Q9UKL3 1982 aa22.29■■□□□ 1.16
UPF3A-201ENST00000351487 SDHDO14521 159 aa22.29■■□□□ 1.16
UPF3A-201ENST00000351487 SLC7A4O43246 635 aa22.29■■□□□ 1.16
UPF3A-201ENST00000351487 RAG1P15918 1043 aa22.29■■□□□ 1.16
UPF3A-201ENST00000351487 GPR15P49685 360 aa22.29■■□□□ 1.16
UPF3A-201ENST00000351487 RFTN1Q14699 578 aaPredicted RBP22.29■■□□□ 1.16
UPF3A-201ENST00000351487 DDR2Q16832 855 aa22.29■■□□□ 1.16
UPF3A-201ENST00000351487 ALFQ53S48 1182 aa22.29■■□□□ 1.16
UPF3A-201ENST00000351487 SH2D4BQ5SQS7 431 aa22.29■■□□□ 1.16
UPF3A-201ENST00000351487 BNC2Q6ZN30 1099 aaPredicted RBP22.29■■□□□ 1.16
UPF3A-201ENST00000351487 SAPCD2Q86UD0 394 aa22.29■■□□□ 1.16
UPF3A-201ENST00000351487 CILP2Q8IUL8 1156 aa22.29■■□□□ 1.16
UPF3A-201ENST00000351487 COLGALT2Q8IYK4 626 aa22.29■■□□□ 1.16
UPF3A-201ENST00000351487 NDNQ99608 321 aa22.29■■□□□ 1.16
UPF3A-201ENST00000351487 SP110Q9HB58 689 aa22.29■■□□□ 1.16
UPF3A-201ENST00000351487 GMIPQ9P107 970 aa22.29■■□□□ 1.16
UPF3A-201ENST00000351487 COPG1Q9Y678 874 aaKnown RBP22.29■■□□□ 1.16
UPF3A-201ENST00000351487 FAM92AA1XBS5 289 aa22.29■■□□□ 1.16
UPF3A-201ENST00000351487 MROH6A6NGR9 719 aa22.29■■□□□ 1.16
UPF3A-201ENST00000351487 LTA4HP09960 611 aaKnown RBP22.29■■□□□ 1.16
UPF3A-201ENST00000351487 MAGEA11P43364 429 aa22.29■■□□□ 1.16
UPF3A-201ENST00000351487 FLT3LGP49771 235 aa22.29■■□□□ 1.16
UPF3A-201ENST00000351487 MAXP61244 160 aa22.29■■□□□ 1.16
UPF3A-201ENST00000351487 USP46P62068 366 aa22.29■■□□□ 1.16
UPF3A-201ENST00000351487 CACNB2Q08289 660 aaPredicted RBP22.29■■□□□ 1.16
UPF3A-201ENST00000351487 PIGGQ5H8A4 983 aa22.29■■□□□ 1.16
UPF3A-201ENST00000351487 CLLU1OSQ5K130 101 aa22.29■■□□□ 1.16
UPF3A-201ENST00000351487 MAP3K21Q5TCX8 1036 aa22.29■■□□□ 1.16
UPF3A-201ENST00000351487 NXNQ6DKJ4 435 aa22.29■■□□□ 1.16
UPF3A-201ENST00000351487 ZNF280DQ6N043 979 aa22.29■■□□□ 1.16
UPF3A-201ENST00000351487 RCN3Q96D15 328 aa22.29■■□□□ 1.16
UPF3A-201ENST00000351487 UBXN10Q96LJ8 280 aa22.29■■□□□ 1.16
UPF3A-201ENST00000351487 KLHL4Q9C0H6 718 aa22.29■■□□□ 1.16
UPF3A-201ENST00000351487 NOD1Q9Y239 953 aa22.29■■□□□ 1.16
UPF3A-201ENST00000351487 ASB3Q9Y575 518 aa22.29■■□□□ 1.16
UPF3A-201ENST00000351487 TMEM233B4DJY2 109 aa22.28■■□□□ 1.16
UPF3A-201ENST00000351487 CNTN5O94779 1100 aa22.28■■□□□ 1.16
UPF3A-201ENST00000351487 UPP2O95045 317 aa22.28■■□□□ 1.16
UPF3A-201ENST00000351487 HSPA1AP0DMV8 641 aaKnown RBP22.28■■□□□ 1.16
UPF3A-201ENST00000351487 HSPA1BP0DMV9 641 aaKnown RBP22.28■■□□□ 1.16
UPF3A-201ENST00000351487 DSC2Q02487 901 aa22.28■■□□□ 1.16
UPF3A-201ENST00000351487 SULT2A1Q06520 285 aa22.28■■□□□ 1.16
UPF3A-201ENST00000351487 IHHQ14623 411 aa22.28■■□□□ 1.16
UPF3A-201ENST00000351487 PELI3Q8N2H9 469 aa22.28■■□□□ 1.16
UPF3A-201ENST00000351487 ATP6V0D2Q8N8Y2 350 aa22.28■■□□□ 1.16
UPF3A-201ENST00000351487 SGF29Q96ES7 293 aa22.28■■□□□ 1.16
UPF3A-201ENST00000351487 FAR2Q96K12 515 aa22.28■■□□□ 1.16
UPF3A-201ENST00000351487 BTN2A3PQ96KV6 586 aa22.28■■□□□ 1.16
UPF3A-201ENST00000351487 KLHL5Q96PQ7 755 aa22.28■■□□□ 1.16
UPF3A-201ENST00000351487 MFSD1Q9H3U5 465 aa22.28■■□□□ 1.16
UPF3A-201ENST00000351487 MRGBPQ9NV56 204 aa22.28■■□□□ 1.16
UPF3A-201ENST00000351487 G3BP2Q9UN86 482 aaKnown RBP22.28■■□□□ 1.16
UPF3A-201ENST00000351487 BPTFQ12830 3046 aa22.28■■□□□ 1.16
UPF3A-201ENST00000351487 A8MT66 165 aa22.27■■□□□ 1.16
UPF3A-201ENST00000351487 IPO13O94829 963 aaKnown RBP22.27■■□□□ 1.16
UPF3A-201ENST00000351487 WISP3O95389 354 aaPredicted RBP22.27■■□□□ 1.16
UPF3A-201ENST00000351487 LYNP07948 512 aa22.27■■□□□ 1.16
UPF3A-201ENST00000351487 RBP1P09455 135 aa22.27■■□□□ 1.16
UPF3A-201ENST00000351487 PEX2P28328 305 aa22.27■■□□□ 1.16
UPF3A-201ENST00000351487 KLC3Q6P597 504 aa22.27■■□□□ 1.16
UPF3A-201ENST00000351487 RTN4RL1Q86UN2 441 aaPredicted RBP22.27■■□□□ 1.16
UPF3A-201ENST00000351487 HIPK4Q8NE63 616 aa22.27■■□□□ 1.16
UPF3A-201ENST00000351487 CEP70Q8NHQ1 597 aa22.27■■□□□ 1.16
UPF3A-201ENST00000351487 GDPD5Q8WTR4 605 aa22.27■■□□□ 1.16
UPF3A-201ENST00000351487 PABPC5Q96DU9 382 aaKnown RBP22.27■■□□□ 1.16
UPF3A-201ENST00000351487 PDP2Q9P2J9 529 aa22.27■■□□□ 1.16
UPF3A-201ENST00000351487 PCDHB5Q9Y5E4 795 aa22.27■■□□□ 1.16
UPF3A-201ENST00000351487 NEMP2A6NFY4 417 aa22.27■■□□□ 1.16
UPF3A-201ENST00000351487 PEX1O43933 1283 aa22.27■■□□□ 1.16
UPF3A-201ENST00000351487 MYCNP04198 464 aaPredicted RBP22.27■■□□□ 1.16
UPF3A-201ENST00000351487 THOP1P52888 689 aa22.27■■□□□ 1.16
UPF3A-201ENST00000351487 GALNT1Q10472 559 aaPredicted RBP22.27■■□□□ 1.16
UPF3A-201ENST00000351487 ACAP2Q15057 778 aa22.27■■□□□ 1.16
UPF3A-201ENST00000351487 TRIP4Q15650 581 aaPredicted RBP22.27■■□□□ 1.16
UPF3A-201ENST00000351487 PSMD5Q16401 504 aa22.27■■□□□ 1.16
UPF3A-201ENST00000351487 ZNF423Q2M1K9 1284 aa22.27■■□□□ 1.16
UPF3A-201ENST00000351487 SFT2D3Q587I9 215 aa22.27■■□□□ 1.16
UPF3A-201ENST00000351487 HECTD2Q5U5R9 776 aa22.27■■□□□ 1.16
UPF3A-201ENST00000351487 LPCAT4Q643R3 524 aa22.27■■□□□ 1.16
UPF3A-201ENST00000351487 SLC24A5Q71RS6 500 aa22.27■■□□□ 1.16
UPF3A-201ENST00000351487 PSMG2Q969U7 264 aa22.27■■□□□ 1.16
UPF3A-201ENST00000351487 EBF3Q9H4W6 596 aa22.27■■□□□ 1.16
UPF3A-201ENST00000351487 PSMD13Q9UNM6 376 aa22.27■■□□□ 1.16
UPF3A-201ENST00000351487 GREB1Q4ZG55 1949 aa22.27■■□□□ 1.16
UPF3A-201ENST00000351487 KCNA5P22460 613 aa22.26■■□□□ 1.15
UPF3A-201ENST00000351487 GRK4P32298 578 aa22.26■■□□□ 1.15
UPF3A-201ENST00000351487 SLC26A3P40879 764 aa22.26■■□□□ 1.15
UPF3A-201ENST00000351487 ITKQ08881 620 aa22.26■■□□□ 1.15
UPF3A-201ENST00000351487 CHSY3Q70JA7 882 aa22.26■■□□□ 1.15
UPF3A-201ENST00000351487 PCSK9Q8NBP7 692 aaKnown RBP22.26■■□□□ 1.15
UPF3A-201ENST00000351487 ARRDC2Q8TBH0 407 aa22.26■■□□□ 1.15
UPF3A-201ENST00000351487 EFCAB1Q9HAE3 211 aa22.26■■□□□ 1.15
UPF3A-201ENST00000351487 THSD7BQ9C0I4 1608 aa22.26■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms