RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 ATP5DP30049 168 aa15.04■□□□□ -0
CCDC88C-202ENST00000334448 GJA4P35212 333 aa15.04■□□□□ -0
CCDC88C-202ENST00000334448 OPRD1P41143 372 aa15.04■□□□□ -0
CCDC88C-202ENST00000334448 GRIA4P48058 902 aa15.04■□□□□ -0
CCDC88C-202ENST00000334448 STK19P49842 368 aaPredicted RBP15.04■□□□□ -0
CCDC88C-202ENST00000334448 MGAT5Q09328 741 aa15.04■□□□□ -0
CCDC88C-202ENST00000334448 PTPRNQ16849 979 aa15.04■□□□□ -0
CCDC88C-202ENST00000334448 ITPRIPL2Q3MIP1 535 aa15.04■□□□□ -0
CCDC88C-202ENST00000334448 KBTBD12Q3ZCT8 623 aa15.04■□□□□ -0
CCDC88C-202ENST00000334448 PREPLQ4J6C6 727 aaPredicted RBP15.04■□□□□ -0
CCDC88C-202ENST00000334448 ATXN7L2Q5T6C5 722 aaPredicted RBP15.04■□□□□ -0
CCDC88C-202ENST00000334448 TRMT10BQ6PF06 316 aaKnown RBP15.04■□□□□ -0
CCDC88C-202ENST00000334448 CAPN12Q6ZSI9 719 aa15.04■□□□□ -0
CCDC88C-202ENST00000334448 SUGP1Q8IWZ8 645 aaKnown RBP15.04■□□□□ -0
CCDC88C-202ENST00000334448 NAT16Q8N8M0 369 aa15.04■□□□□ -0
CCDC88C-202ENST00000334448 TERB1Q8NA31 727 aa15.04■□□□□ -0
CCDC88C-202ENST00000334448 DCAKDQ8WVC6 231 aa15.04■□□□□ -0
CCDC88C-202ENST00000334448 ECHDC3Q96DC8 303 aa15.04■□□□□ -0
CCDC88C-202ENST00000334448 CERS2Q96G23 380 aa15.04■□□□□ -0
CCDC88C-202ENST00000334448 LRCH3Q96II8 777 aa15.04■□□□□ -0
CCDC88C-202ENST00000334448 FCRL3Q96P31 734 aaPredicted RBP15.04■□□□□ -0
CCDC88C-202ENST00000334448 SRPK1Q96SB4 655 aaKnown RBP15.04■□□□□ -0
CCDC88C-202ENST00000334448 PAFAH2Q99487 392 aa15.04■□□□□ -0
CCDC88C-202ENST00000334448 TRIM56Q9BRZ2 755 aaKnown RBP15.04■□□□□ -0
CCDC88C-202ENST00000334448 ATP13A3Q9H7F0 1226 aa15.04■□□□□ -0
CCDC88C-202ENST00000334448 ELOVL2Q9NXB9 296 aa15.04■□□□□ -0
CCDC88C-202ENST00000334448 HACD3Q9P035 362 aa15.04■□□□□ -0
CCDC88C-202ENST00000334448 ACTL7BQ9Y614 415 aa15.04■□□□□ -0
CCDC88C-202ENST00000334448 BRWD1Q9NSI6 2320 aa15.04■□□□□ -0
CCDC88C-202ENST00000334448 REV3LO60673 3130 aa15.03■□□□□ -0
CCDC88C-202ENST00000334448 PGLSO95336 258 aa15.03■□□□□ -0
CCDC88C-202ENST00000334448 TPH1P17752 444 aa15.03■□□□□ -0
CCDC88C-202ENST00000334448 GDI1P31150 447 aa15.03■□□□□ -0
CCDC88C-202ENST00000334448 NUMBP49757 651 aa15.03■□□□□ -0
CCDC88C-202ENST00000334448 GRM2Q14416 872 aa15.03■□□□□ -0
CCDC88C-202ENST00000334448 POU6F1Q14863 301 aa15.03■□□□□ -0
CCDC88C-202ENST00000334448 DLG2Q15700 870 aa15.03■□□□□ -0
CCDC88C-202ENST00000334448 MYLK3Q32MK0 819 aa15.03■□□□□ -0
CCDC88C-202ENST00000334448 CARD16Q5EG05 197 aa15.03■□□□□ -0
CCDC88C-202ENST00000334448 PDPK2PQ6A1A2 396 aa15.03■□□□□ -0
CCDC88C-202ENST00000334448 SLC26A11Q86WA9 606 aa15.03■□□□□ -0
CCDC88C-202ENST00000334448 CNTN4Q8IWV2 1026 aa15.03■□□□□ -0
CCDC88C-202ENST00000334448 BRSK1Q8TDC3 778 aa15.03■□□□□ -0
CCDC88C-202ENST00000334448 CDKL2Q92772 493 aa15.03■□□□□ -0
CCDC88C-202ENST00000334448 ZNF669Q96BR6 464 aaPredicted RBP15.03■□□□□ -0
CCDC88C-202ENST00000334448 CHFRQ96EP1 664 aa15.03■□□□□ -0
CCDC88C-202ENST00000334448 RPL10LQ96L21 214 aaKnown RBP15.03■□□□□ -0
CCDC88C-202ENST00000334448 ZNF641Q96N77 438 aaPredicted RBP15.03■□□□□ -0
CCDC88C-202ENST00000334448 TM6SF2Q9BZW4 377 aa15.03■□□□□ -0
CCDC88C-202ENST00000334448 CHRAC1Q9NRG0 131 aa15.03■□□□□ -0
CCDC88C-202ENST00000334448 SMYD2Q9NRG4 433 aa15.03■□□□□ -0
CCDC88C-202ENST00000334448 SLCO3A1Q9UIG8 710 aa15.03■□□□□ -0
CCDC88C-202ENST00000334448 NUMBLQ9Y6R0 609 aa15.03■□□□□ -0
CCDC88C-202ENST00000334448 KIAA1549LQ6ZVL6 1849 aa15.02■□□□□ -0
CCDC88C-202ENST00000334448 TSPAN11A1L157 253 aa15.02■□□□□ -0
CCDC88C-202ENST00000334448 MBTPS2O43462 519 aa15.02■□□□□ -0
CCDC88C-202ENST00000334448 LDB2O43679 373 aa15.02■□□□□ -0
CCDC88C-202ENST00000334448 POP4O95707 220 aaKnown RBP15.02■□□□□ -0
CCDC88C-202ENST00000334448 PAMP19021 973 aa15.02■□□□□ -0
CCDC88C-202ENST00000334448 CNTFP26441 200 aa15.02■□□□□ -0
CCDC88C-202ENST00000334448 SERPINA4P29622 427 aa15.02■□□□□ -0
CCDC88C-202ENST00000334448 NNMTP40261 264 aa15.02■□□□□ -0
CCDC88C-202ENST00000334448 MSH2P43246 934 aa15.02■□□□□ -0
CCDC88C-202ENST00000334448 SLC6A11P48066 632 aa15.02■□□□□ -0
CCDC88C-202ENST00000334448 ARCN1P48444 511 aaKnown RBP15.02■□□□□ -0
CCDC88C-202ENST00000334448 BCL2L1Q07817 233 aa15.02■□□□□ -0
CCDC88C-202ENST00000334448 EFTUD2Q15029 972 aaKnown RBP eCLIP15.02■□□□□ -0
CCDC88C-202ENST00000334448 E2F5Q15329 346 aa15.02■□□□□ -0
CCDC88C-202ENST00000334448 QPCTQ16769 361 aa15.02■□□□□ -0
CCDC88C-202ENST00000334448 TSTD2Q5T7W7 516 aa15.02■□□□□ -0
CCDC88C-202ENST00000334448 ARMC12Q5T9G4 340 aa15.02■□□□□ -0
CCDC88C-202ENST00000334448 EP400NLQ6ZTU2 488 aa15.02■□□□□ -0
CCDC88C-202ENST00000334448 SLC25A41Q8N5S1 370 aa15.02■□□□□ -0
CCDC88C-202ENST00000334448 OR2A12Q8NGT7 310 aa15.02■□□□□ -0
CCDC88C-202ENST00000334448 MZB1Q8WU39 189 aa15.02■□□□□ -0
CCDC88C-202ENST00000334448 PIH1D2Q8WWB5 315 aa15.02■□□□□ -0
CCDC88C-202ENST00000334448 MFSD3Q96ES6 412 aa15.02■□□□□ -0
CCDC88C-202ENST00000334448 LRIG1Q96JA1 1093 aa15.02■□□□□ -0
CCDC88C-202ENST00000334448 LYSMD1Q96S90 227 aa15.02■□□□□ -0
CCDC88C-202ENST00000334448 TRABDQ9H4I3 376 aa15.02■□□□□ -0
CCDC88C-202ENST00000334448 SENP1Q9P0U3 644 aa15.02■□□□□ -0
CCDC88C-202ENST00000334448 EVLQ9UI08 416 aaPredicted RBP15.02■□□□□ -0
CCDC88C-202ENST00000334448 SLC8A2Q9UPR5 921 aa15.02■□□□□ -0
CCDC88C-202ENST00000334448 CHKBQ9Y259 395 aa15.02■□□□□ -0
CCDC88C-202ENST00000334448 PPIL1Q9Y3C6 166 aa15.02■□□□□ -0
CCDC88C-202ENST00000334448 PCDHGC4Q9Y5F7 938 aa15.02■□□□□ -0
CCDC88C-202ENST00000334448 MUC22E2RYF6 1773 aaPredicted RBP15.02□□□□□ -0.01
CCDC88C-202ENST00000334448 SZT2Q5T011 3432 aa15.01□□□□□ -0.01
CCDC88C-202ENST00000334448 TLDC2A0PJX2 215 aa15.01□□□□□ -0.01
CCDC88C-202ENST00000334448 CXorf49A8MYA2 514 aaPredicted RBP15.01□□□□□ -0.01
CCDC88C-202ENST00000334448 ANKRD66B4E2M5 251 aa15.01□□□□□ -0.01
CCDC88C-202ENST00000334448 PRRT4C9JH25 899 aa15.01□□□□□ -0.01
CCDC88C-202ENST00000334448 H3BQ06 376 aaPredicted RBP15.01□□□□□ -0.01
CCDC88C-202ENST00000334448 INHBAP08476 426 aa15.01□□□□□ -0.01
CCDC88C-202ENST00000334448 PDHA1P08559 390 aa15.01□□□□□ -0.01
CCDC88C-202ENST00000334448 ARNTP27540 789 aa15.01□□□□□ -0.01
CCDC88C-202ENST00000334448 NMBRP28336 390 aa15.01□□□□□ -0.01
CCDC88C-202ENST00000334448 GRIA2P42262 883 aa15.01□□□□□ -0.01
CCDC88C-202ENST00000334448 SLCO1A2P46721 670 aa15.01□□□□□ -0.01
CCDC88C-202ENST00000334448 SERPINB9P50453 376 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms