RNA–Protein interactions for RNA: ENST00000324340.13

DDX39A-202, Transcript of DExD-box helicase 39A, humanhuman

TSL 1 (best)

Gene DDX39A, Length 1,355 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-202ENST00000324340 GRAMD1AQ96CP6 724 aa12.89□□□□□ -0.35
DDX39A-202ENST00000324340 C9orf72Q96LT7 481 aa12.89□□□□□ -0.35
DDX39A-202ENST00000324340 NUDCD1Q96RS6 583 aa12.89□□□□□ -0.35
DDX39A-202ENST00000324340 SEMA3CQ99985 751 aa12.89□□□□□ -0.35
DDX39A-202ENST00000324340 PLA2G2FQ9BZM2 168 aa12.89□□□□□ -0.35
DDX39A-202ENST00000324340 EBF3Q9H4W6 596 aa12.89□□□□□ -0.35
DDX39A-202ENST00000324340 ECT2Q9H8V3 914 aa12.89□□□□□ -0.35
DDX39A-202ENST00000324340 ARNT2Q9HBZ2 717 aa12.89□□□□□ -0.35
DDX39A-202ENST00000324340 LRRC4CQ9HCJ2 640 aa12.89□□□□□ -0.35
DDX39A-202ENST00000324340 HPS4Q9NQG7 708 aa12.89□□□□□ -0.35
DDX39A-202ENST00000324340 UBP1Q9NZI7 540 aa12.89□□□□□ -0.35
DDX39A-202ENST00000324340 LHX3Q9UBR4 397 aa12.89□□□□□ -0.35
DDX39A-202ENST00000324340 HS3ST2Q9Y278 367 aa12.89□□□□□ -0.35
DDX39A-202ENST00000324340 SLC27A6Q9Y2P4 619 aa12.89□□□□□ -0.35
DDX39A-202ENST00000324340 USP15Q9Y4E8 981 aaPredicted RBP12.89□□□□□ -0.35
DDX39A-202ENST00000324340 TTLL3Q9Y4R7 772 aa12.89□□□□□ -0.35
DDX39A-202ENST00000324340 MYOFQ9NZM1 2061 aa12.89□□□□□ -0.35
DDX39A-202ENST00000324340 LOC285095A0A1B0GVY8 99 aa12.88□□□□□ -0.35
DDX39A-202ENST00000324340 OTOL1A6NHN0 477 aaPredicted RBP12.88□□□□□ -0.35
DDX39A-202ENST00000324340 SDR42E2A6NKP2 422 aa12.88□□□□□ -0.35
DDX39A-202ENST00000324340 ANHXE9PGG2 379 aa12.88□□□□□ -0.35
DDX39A-202ENST00000324340 SNX3O60493 162 aa12.88□□□□□ -0.35
DDX39A-202ENST00000324340 MT-CO1P00395 513 aa12.88□□□□□ -0.35
DDX39A-202ENST00000324340 EPOP01588 193 aa12.88□□□□□ -0.35
DDX39A-202ENST00000324340 ACADSP16219 412 aa12.88□□□□□ -0.35
DDX39A-202ENST00000324340 ATP6V1C1P21283 382 aa12.88□□□□□ -0.35
DDX39A-202ENST00000324340 ALDH3A1P30838 453 aa12.88□□□□□ -0.35
DDX39A-202ENST00000324340 CD86P42081 329 aa12.88□□□□□ -0.35
DDX39A-202ENST00000324340 RGRP47804 291 aa12.88□□□□□ -0.35
DDX39A-202ENST00000324340 NUMBP49757 651 aa12.88□□□□□ -0.35
DDX39A-202ENST00000324340 VASPP50552 380 aaPredicted RBP12.88□□□□□ -0.35
DDX39A-202ENST00000324340 WNT3AP56704 352 aa12.88□□□□□ -0.35
DDX39A-202ENST00000324340 ITKQ08881 620 aa12.88□□□□□ -0.35
DDX39A-202ENST00000324340 CDH17Q12864 832 aa12.88□□□□□ -0.35
DDX39A-202ENST00000324340 DENND5AQ6IQ26 1287 aa12.88□□□□□ -0.35
DDX39A-202ENST00000324340 TAOK1Q7L7X3 1001 aa12.88□□□□□ -0.35
DDX39A-202ENST00000324340 TBC1D1Q86TI0 1168 aaPredicted RBP12.88□□□□□ -0.35
DDX39A-202ENST00000324340 CCNJLQ8IV13 435 aa12.88□□□□□ -0.35
DDX39A-202ENST00000324340 IGDCC3Q8IVU1 814 aa12.88□□□□□ -0.35
DDX39A-202ENST00000324340 ATP11CQ8NB49 1132 aa12.88□□□□□ -0.35
DDX39A-202ENST00000324340 OR52K1Q8NGK4 314 aa12.88□□□□□ -0.35
DDX39A-202ENST00000324340 FBF1Q8TES7 1133 aa12.88□□□□□ -0.35
DDX39A-202ENST00000324340 FGF14Q92915 247 aa12.88□□□□□ -0.35
DDX39A-202ENST00000324340 TTC17Q96AE7 1141 aa12.88□□□□□ -0.35
DDX39A-202ENST00000324340 ZFYVE19Q96K21 471 aa12.88□□□□□ -0.35
DDX39A-202ENST00000324340 FAM161BQ96MY7 647 aa12.88□□□□□ -0.35
DDX39A-202ENST00000324340 TMEM237Q96Q45 408 aa12.88□□□□□ -0.35
DDX39A-202ENST00000324340 EBNA1BP2Q99848 306 aaKnown RBP12.88□□□□□ -0.35
DDX39A-202ENST00000324340 TBL1YQ9BQ87 522 aa12.88□□□□□ -0.35
DDX39A-202ENST00000324340 OSBPL1AQ9BXW6 950 aa12.88□□□□□ -0.35
DDX39A-202ENST00000324340 FAM192AQ9GZU8 254 aa12.88□□□□□ -0.35
DDX39A-202ENST00000324340 GRXCR2A6NFK2 248 aa12.87□□□□□ -0.35
DDX39A-202ENST00000324340 ARNTLO00327 626 aa12.87□□□□□ -0.35
DDX39A-202ENST00000324340 INSIG1O15503 277 aa12.87□□□□□ -0.35
DDX39A-202ENST00000324340 USP12O75317 370 aa12.87□□□□□ -0.35
DDX39A-202ENST00000324340 PMPCBO75439 489 aa12.87□□□□□ -0.35
DDX39A-202ENST00000324340 SPAG6O75602 509 aa12.87□□□□□ -0.35
DDX39A-202ENST00000324340 ACSL3O95573 720 aa12.87□□□□□ -0.35
DDX39A-202ENST00000324340 SERPINF2P08697 491 aa12.87□□□□□ -0.35
DDX39A-202ENST00000324340 MSH2P43246 934 aa12.87□□□□□ -0.35
DDX39A-202ENST00000324340 CSNK1DP48730 415 aa12.87□□□□□ -0.35
DDX39A-202ENST00000324340 NPY2RP49146 381 aa12.87□□□□□ -0.35
DDX39A-202ENST00000324340 DGKGP49619 791 aa12.87□□□□□ -0.35
DDX39A-202ENST00000324340 GPX6P59796 221 aa12.87□□□□□ -0.35
DDX39A-202ENST00000324340 MTM1Q13496 603 aa12.87□□□□□ -0.35
DDX39A-202ENST00000324340 OLIG2Q13516 323 aa12.87□□□□□ -0.35
DDX39A-202ENST00000324340 HTR4Q13639 388 aa12.87□□□□□ -0.35
DDX39A-202ENST00000324340 RUNX3Q13761 415 aa12.87□□□□□ -0.35
DDX39A-202ENST00000324340 TAF11Q15544 211 aa12.87□□□□□ -0.35
DDX39A-202ENST00000324340 TSNAXIP1Q2TAA8 658 aa12.87□□□□□ -0.35
DDX39A-202ENST00000324340 TNFAIP8L3Q5GJ75 292 aa12.87□□□□□ -0.35
DDX39A-202ENST00000324340 HP1BP3Q5SSJ5 553 aaPredicted RBP12.87□□□□□ -0.35
DDX39A-202ENST00000324340 TMEM215Q68D42 235 aa12.87□□□□□ -0.35
DDX39A-202ENST00000324340 C12orf40Q86WS4 652 aa12.87□□□□□ -0.35
DDX39A-202ENST00000324340 ANKMY2Q8IV38 441 aa12.87□□□□□ -0.35
DDX39A-202ENST00000324340 CPA6Q8N4T0 437 aa12.87□□□□□ -0.35
DDX39A-202ENST00000324340 NAT16Q8N8M0 369 aa12.87□□□□□ -0.35
DDX39A-202ENST00000324340 ENDOVQ8N8Q3 282 aaKnown RBP12.87□□□□□ -0.35
DDX39A-202ENST00000324340 IPMKQ8NFU5 416 aa12.87□□□□□ -0.35
DDX39A-202ENST00000324340 WFIKKN2Q8TEU8 576 aa12.87□□□□□ -0.35
DDX39A-202ENST00000324340 ISG20Q96AZ6 181 aaKnown RBP12.87□□□□□ -0.35
DDX39A-202ENST00000324340 KLHL29Q96CT2 875 aa12.87□□□□□ -0.35
DDX39A-202ENST00000324340 FEM1CQ96JP0 617 aa12.87□□□□□ -0.35
DDX39A-202ENST00000324340 KXD1Q9BQD3 176 aa12.87□□□□□ -0.35
DDX39A-202ENST00000324340 NAT9Q9BTE0 207 aa12.87□□□□□ -0.35
DDX39A-202ENST00000324340 FICDQ9BVA6 458 aa12.87□□□□□ -0.35
DDX39A-202ENST00000324340 FSD1LQ9BXM9 530 aa12.87□□□□□ -0.35
DDX39A-202ENST00000324340 ROPN1BQ9BZX4 212 aaPredicted RBP12.87□□□□□ -0.35
DDX39A-202ENST00000324340 ROPN1Q9HAT0 212 aaPredicted RBP12.87□□□□□ -0.35
DDX39A-202ENST00000324340 INTS9Q9NV88 658 aaKnown RBP12.87□□□□□ -0.35
DDX39A-202ENST00000324340 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.87□□□□□ -0.35
DDX39A-202ENST00000324340 CHCHD3Q9NX63 227 aaKnown RBP12.87□□□□□ -0.35
DDX39A-202ENST00000324340 CHMP2BQ9UQN3 213 aa12.87□□□□□ -0.35
DDX39A-202ENST00000324340 ARL2BPQ9Y2Y0 163 aa12.87□□□□□ -0.35
DDX39A-202ENST00000324340 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.87□□□□□ -0.35
DDX39A-202ENST00000324340 CDH23Q9H251 3354 aa12.87□□□□□ -0.35
DDX39A-202ENST00000324340 TTC24A2A3L6 582 aaPredicted RBP12.86□□□□□ -0.35
DDX39A-202ENST00000324340 K7ERQ8 282 aa12.86□□□□□ -0.35
DDX39A-202ENST00000324340 TULP3O75386 442 aa12.86□□□□□ -0.35
DDX39A-202ENST00000324340 ZNF821O75541 412 aaPredicted RBP12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms