RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 EDEM3Q9BZQ6 932 aa14.94□□□□□ -0.02
CCDC88B-201ENST00000301897 TTYH3Q9C0H2 523 aa14.94□□□□□ -0.02
CCDC88B-201ENST00000301897 PNMA8BQ9ULN7 279 aaPredicted RBP14.94□□□□□ -0.02
CCDC88B-201ENST00000301897 ACTL7AQ9Y615 435 aa14.94□□□□□ -0.02
CCDC88B-201ENST00000301897 PMS2P1A4D2B8 440 aa14.93□□□□□ -0.02
CCDC88B-201ENST00000301897 BUB1O43683 1085 aa14.93□□□□□ -0.02
CCDC88B-201ENST00000301897 TMCC1O94876 653 aa14.93□□□□□ -0.02
CCDC88B-201ENST00000301897 PLEKP08567 350 aaPredicted RBP14.93□□□□□ -0.02
CCDC88B-201ENST00000301897 JMJD7P0C870 316 aa14.93□□□□□ -0.02
CCDC88B-201ENST00000301897 PTPN9P43378 593 aa14.93□□□□□ -0.02
CCDC88B-201ENST00000301897 RHOAP61586 193 aa14.93□□□□□ -0.02
CCDC88B-201ENST00000301897 NOMO3P69849 1222 aa14.93□□□□□ -0.02
CCDC88B-201ENST00000301897 IRF4Q15306 451 aa14.93□□□□□ -0.02
CCDC88B-201ENST00000301897 TMEM52BQ4KMG9 183 aa14.93□□□□□ -0.02
CCDC88B-201ENST00000301897 ATXN7L2Q5T6C5 722 aaPredicted RBP14.93□□□□□ -0.02
CCDC88B-201ENST00000301897 TAF3Q5VWG9 929 aa14.93□□□□□ -0.02
CCDC88B-201ENST00000301897 NAA35Q5VZE5 725 aa14.93□□□□□ -0.02
CCDC88B-201ENST00000301897 ZNF354CQ86Y25 554 aa14.93□□□□□ -0.02
CCDC88B-201ENST00000301897 ZSCAN1Q8NBB4 408 aa14.93□□□□□ -0.02
CCDC88B-201ENST00000301897 CPA5Q8WXQ8 436 aa14.93□□□□□ -0.02
CCDC88B-201ENST00000301897 ARHGAP9Q9BRR9 750 aa14.93□□□□□ -0.02
CCDC88B-201ENST00000301897 MBNL1Q9NR56 388 aaKnown RBP14.93□□□□□ -0.02
CCDC88B-201ENST00000301897 METTL5Q9NRN9 209 aaKnown RBP14.93□□□□□ -0.02
CCDC88B-201ENST00000301897 NDFIP2Q9NV92 336 aa14.93□□□□□ -0.02
CCDC88B-201ENST00000301897 WDR70Q9NW82 654 aa14.93□□□□□ -0.02
CCDC88B-201ENST00000301897 SIRPGQ9P1W8 387 aa14.93□□□□□ -0.02
CCDC88B-201ENST00000301897 FLNCQ14315 2725 aa14.92□□□□□ -0.02
CCDC88B-201ENST00000301897 LRIG2O94898 1065 aa14.92□□□□□ -0.02
CCDC88B-201ENST00000301897 RPLP0P05388 317 aaKnown RBP14.92□□□□□ -0.02
CCDC88B-201ENST00000301897 LIPCP11150 499 aa14.92□□□□□ -0.02
CCDC88B-201ENST00000301897 TIMP2P16035 220 aa14.92□□□□□ -0.02
CCDC88B-201ENST00000301897 PNLIPP16233 465 aa14.92□□□□□ -0.02
CCDC88B-201ENST00000301897 YBEYP58557 167 aaPredicted RBP14.92□□□□□ -0.02
CCDC88B-201ENST00000301897 SRP54P61011 504 aaKnown RBP14.92□□□□□ -0.02
CCDC88B-201ENST00000301897 CCL7P80098 99 aa14.92□□□□□ -0.02
CCDC88B-201ENST00000301897 NFATC3Q12968 1075 aa14.92□□□□□ -0.02
CCDC88B-201ENST00000301897 NFATC4Q14934 902 aa14.92□□□□□ -0.02
CCDC88B-201ENST00000301897 AGERQ15109 404 aa14.92□□□□□ -0.02
CCDC88B-201ENST00000301897 CDO1Q16878 200 aa14.92□□□□□ -0.02
CCDC88B-201ENST00000301897 ALG11Q2TAA5 492 aa14.92□□□□□ -0.02
CCDC88B-201ENST00000301897 VWA3BQ502W6 1294 aa14.92□□□□□ -0.02
CCDC88B-201ENST00000301897 C2CD6Q53TS8 623 aa14.92□□□□□ -0.02
CCDC88B-201ENST00000301897 KLHDC7AQ5VTJ3 777 aa14.92□□□□□ -0.02
CCDC88B-201ENST00000301897 ERAP2Q6P179 960 aa14.92□□□□□ -0.02
CCDC88B-201ENST00000301897 B3GNT8Q7Z7M8 397 aa14.92□□□□□ -0.02
CCDC88B-201ENST00000301897 NOP9Q86U38 636 aaKnown RBP14.92□□□□□ -0.02
CCDC88B-201ENST00000301897 EMC1Q8N766 993 aa14.92□□□□□ -0.02
CCDC88B-201ENST00000301897 NTAN1Q96AB6 310 aa14.92□□□□□ -0.02
CCDC88B-201ENST00000301897 NCAPGQ9BPX3 1015 aa14.92□□□□□ -0.02
CCDC88B-201ENST00000301897 TUBGCP2Q9BSJ2 902 aa14.92□□□□□ -0.02
CCDC88B-201ENST00000301897 WRAP53Q9BUR4 548 aaKnown RBP14.92□□□□□ -0.02
CCDC88B-201ENST00000301897 STK33Q9BYT3 514 aa14.92□□□□□ -0.02
CCDC88B-201ENST00000301897 LRRN3Q9H3W5 708 aa14.92□□□□□ -0.02
CCDC88B-201ENST00000301897 DONSONQ9NYP3 566 aa14.92□□□□□ -0.02
CCDC88B-201ENST00000301897 KLQ9UEF7 1012 aa14.92□□□□□ -0.02
CCDC88B-201ENST00000301897 APPL1Q9UKG1 709 aa14.92□□□□□ -0.02
CCDC88B-201ENST00000301897 FHOD1Q9Y613 1164 aa14.92□□□□□ -0.02
CCDC88B-201ENST00000301897 SCN8AQ9UQD0 1980 aa14.92□□□□□ -0.02
CCDC88B-201ENST00000301897 EFSO43281 561 aa14.91□□□□□ -0.02
CCDC88B-201ENST00000301897 TNFP01375 233 aa14.91□□□□□ -0.02
CCDC88B-201ENST00000301897 UCHL3P15374 230 aa14.91□□□□□ -0.02
CCDC88B-201ENST00000301897 CD82P27701 267 aa14.91□□□□□ -0.02
CCDC88B-201ENST00000301897 MTM1Q13496 603 aa14.91□□□□□ -0.02
CCDC88B-201ENST00000301897 WSCD2Q2TBF2 565 aa14.91□□□□□ -0.02
CCDC88B-201ENST00000301897 PARP15Q460N3 678 aa14.91□□□□□ -0.02
CCDC88B-201ENST00000301897 CCDC14Q49A88 953 aa14.91□□□□□ -0.02
CCDC88B-201ENST00000301897 LRRC73Q5JTD7 316 aa14.91□□□□□ -0.02
CCDC88B-201ENST00000301897 DPY19L2P1Q6NXN4 242 aa14.91□□□□□ -0.02
CCDC88B-201ENST00000301897 BRAT1Q6PJG6 821 aa14.91□□□□□ -0.02
CCDC88B-201ENST00000301897 ENPP7Q6UWV6 458 aa14.91□□□□□ -0.02
CCDC88B-201ENST00000301897 LEKR1Q6ZMV7 388 aa14.91□□□□□ -0.02
CCDC88B-201ENST00000301897 DNAAF5Q86Y56 855 aa14.91□□□□□ -0.02
CCDC88B-201ENST00000301897 CCNJLQ8IV13 435 aa14.91□□□□□ -0.02
CCDC88B-201ENST00000301897 EXD3Q8N9H8 876 aa14.91□□□□□ -0.02
CCDC88B-201ENST00000301897 GPR156Q8NFN8 814 aa14.91□□□□□ -0.02
CCDC88B-201ENST00000301897 EPS8L1Q8TE68 723 aa14.91□□□□□ -0.02
CCDC88B-201ENST00000301897 RXFP2Q8WXD0 754 aa14.91□□□□□ -0.02
CCDC88B-201ENST00000301897 CENPIQ92674 756 aaPredicted RBP14.91□□□□□ -0.02
CCDC88B-201ENST00000301897 TSACCQ96A04 125 aaPredicted RBP14.91□□□□□ -0.02
CCDC88B-201ENST00000301897 VOPP1Q96AW1 172 aa14.91□□□□□ -0.02
CCDC88B-201ENST00000301897 WDR92Q96MX6 357 aa14.91□□□□□ -0.02
CCDC88B-201ENST00000301897 RBM15Q96T37 977 aaKnown RBP eCLIP14.91□□□□□ -0.02
CCDC88B-201ENST00000301897 APOOQ9BUR5 198 aa14.91□□□□□ -0.02
CCDC88B-201ENST00000301897 NAA15Q9BXJ9 866 aaKnown RBP14.91□□□□□ -0.02
CCDC88B-201ENST00000301897 FOXP3Q9BZS1 431 aa14.91□□□□□ -0.02
CCDC88B-201ENST00000301897 B3GNT4Q9C0J1 378 aa14.91□□□□□ -0.02
CCDC88B-201ENST00000301897 STARD5Q9NSY2 213 aa14.91□□□□□ -0.02
CCDC88B-201ENST00000301897 PISDQ9UG56 409 aa14.91□□□□□ -0.02
CCDC88B-201ENST00000301897 IL17BQ9UHF5 180 aa14.91□□□□□ -0.02
CCDC88B-201ENST00000301897 RABGEF1Q9UJ41 708 aa14.91□□□□□ -0.02
CCDC88B-201ENST00000301897 NEU3Q9UQ49 428 aa14.91□□□□□ -0.02
CCDC88B-201ENST00000301897 LOXL2Q9Y4K0 774 aa14.91□□□□□ -0.02
CCDC88B-201ENST00000301897 PCDHB11Q9Y5F2 797 aa14.91□□□□□ -0.02
CCDC88B-201ENST00000301897 DGKBQ9Y6T7 804 aa14.91□□□□□ -0.02
CCDC88B-201ENST00000301897 LRP4O75096 1905 aa14.91□□□□□ -0.02
CCDC88B-201ENST00000301897 LRRK1Q38SD2 2015 aa14.9□□□□□ -0.02
CCDC88B-201ENST00000301897 LRRK2Q5S007 2527 aa14.9□□□□□ -0.02
CCDC88B-201ENST00000301897 C2CD4BA6NLJ0 364 aa14.9□□□□□ -0.02
CCDC88B-201ENST00000301897 F8VZ95 297 aa14.9□□□□□ -0.02
CCDC88B-201ENST00000301897 FAM72CH0Y354 149 aa14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms