RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 LINGO4Q6UY18 593 aa14.37□□□□□ -0.11
C9orf3-202ENST00000297979 NLRP9Q7RTR0 991 aa14.37□□□□□ -0.11
C9orf3-202ENST00000297979 DCAF4L2Q8NA75 395 aa14.37□□□□□ -0.11
C9orf3-202ENST00000297979 ARMC2Q8NEN0 867 aa14.37□□□□□ -0.11
C9orf3-202ENST00000297979 PTPRN2Q92932 1015 aa14.37□□□□□ -0.11
C9orf3-202ENST00000297979 YIPF2Q9BWQ6 316 aa14.37□□□□□ -0.11
C9orf3-202ENST00000297979 SMG9Q9H0W8 520 aaKnown RBP14.37□□□□□ -0.11
C9orf3-202ENST00000297979 RHOJQ9H4E5 214 aa14.37□□□□□ -0.11
C9orf3-202ENST00000297979 MANSC1Q9H8J5 431 aa14.37□□□□□ -0.11
C9orf3-202ENST00000297979 SLCO1B3Q9NPD5 702 aa14.37□□□□□ -0.11
C9orf3-202ENST00000297979 MTO1Q9Y2Z2 717 aaKnown RBP14.37□□□□□ -0.11
C9orf3-202ENST00000297979 MROH6A6NGR9 719 aa14.37□□□□□ -0.11
C9orf3-202ENST00000297979 EDF1O60869 148 aaKnown RBP14.37□□□□□ -0.11
C9orf3-202ENST00000297979 CLASP2O75122 1294 aaKnown RBP14.37□□□□□ -0.11
C9orf3-202ENST00000297979 TMCC1O94876 653 aa14.37□□□□□ -0.11
C9orf3-202ENST00000297979 NDST3O95803 873 aa14.37□□□□□ -0.11
C9orf3-202ENST00000297979 CD160O95971 181 aa14.37□□□□□ -0.11
C9orf3-202ENST00000297979 EPCAMP16422 314 aa14.37□□□□□ -0.11
C9orf3-202ENST00000297979 HADHAP40939 763 aa14.37□□□□□ -0.11
C9orf3-202ENST00000297979 ABCG1P45844 678 aa14.37□□□□□ -0.11
C9orf3-202ENST00000297979 GALNT3Q14435 633 aa14.37□□□□□ -0.11
C9orf3-202ENST00000297979 KYAT3Q6YP21 454 aaKnown RBP14.37□□□□□ -0.11
C9orf3-202ENST00000297979 ZC3HC1Q86WB0 502 aaKnown RBP14.37□□□□□ -0.11
C9orf3-202ENST00000297979 IQCF2Q8IXL9 164 aa14.37□□□□□ -0.11
C9orf3-202ENST00000297979 TCEAL4Q96EI5 215 aa14.37□□□□□ -0.11
C9orf3-202ENST00000297979 NUDCD1Q96RS6 583 aa14.37□□□□□ -0.11
C9orf3-202ENST00000297979 TRIB3Q96RU7 358 aa14.37□□□□□ -0.11
C9orf3-202ENST00000297979 DNMT3BQ9UBC3 853 aaKnown RBP14.37□□□□□ -0.11
C9orf3-202ENST00000297979 DCDC2Q9UHG0 476 aa14.37□□□□□ -0.11
C9orf3-202ENST00000297979 STARD13Q9Y3M8 1113 aa14.37□□□□□ -0.11
C9orf3-202ENST00000297979 TOP3BO95985 862 aaKnown RBP14.37□□□□□ -0.11
C9orf3-202ENST00000297979 RHOP08100 348 aa14.37□□□□□ -0.11
C9orf3-202ENST00000297979 AVPR1AP37288 418 aa14.37□□□□□ -0.11
C9orf3-202ENST00000297979 LAMB3Q13751 1172 aa14.37□□□□□ -0.11
C9orf3-202ENST00000297979 TEAD2Q15562 447 aa14.37□□□□□ -0.11
C9orf3-202ENST00000297979 ARHGAP15Q53QZ3 475 aa14.37□□□□□ -0.11
C9orf3-202ENST00000297979 INO80DQ53TQ3 878 aaPredicted RBP14.37□□□□□ -0.11
C9orf3-202ENST00000297979 CMC1Q7Z7K0 106 aa14.37□□□□□ -0.11
C9orf3-202ENST00000297979 CMTM8Q8IZV2 173 aa14.37□□□□□ -0.11
C9orf3-202ENST00000297979 SH3RF2Q8TEC5 729 aa14.37□□□□□ -0.11
C9orf3-202ENST00000297979 ALG14Q96F25 216 aa14.37□□□□□ -0.11
C9orf3-202ENST00000297979 GPR22Q99680 433 aa14.37□□□□□ -0.11
C9orf3-202ENST00000297979 VPS51Q9UID3 782 aa14.37□□□□□ -0.11
C9orf3-202ENST00000297979 GGT7Q9UJ14 662 aa14.37□□□□□ -0.11
C9orf3-202ENST00000297979 XYLBO75191 536 aa14.36□□□□□ -0.11
C9orf3-202ENST00000297979 HNRNPA1P09651 372 aaKnown RBP eCLIP14.36□□□□□ -0.11
C9orf3-202ENST00000297979 SLC1A2P43004 574 aa14.36□□□□□ -0.11
C9orf3-202ENST00000297979 ZNF470Q6ECI4 717 aa14.36□□□□□ -0.11
C9orf3-202ENST00000297979 RNF135Q8IUD6 432 aa14.36□□□□□ -0.11
C9orf3-202ENST00000297979 DENND6AQ8IWF6 608 aa14.36□□□□□ -0.11
C9orf3-202ENST00000297979 LEMD2Q8NC56 503 aa14.36□□□□□ -0.11
C9orf3-202ENST00000297979 OR13J1Q8NGT2 312 aa14.36□□□□□ -0.11
C9orf3-202ENST00000297979 GABPB2Q8TAK5 448 aaPredicted RBP14.36□□□□□ -0.11
C9orf3-202ENST00000297979 TASP1Q9H6P5 420 aa14.36□□□□□ -0.11
C9orf3-202ENST00000297979 ARIH1Q9Y4X5 557 aaPredicted RBP14.36□□□□□ -0.11
C9orf3-202ENST00000297979 E2F8A0AVK6 867 aa14.36□□□□□ -0.11
C9orf3-202ENST00000297979 GRXCR1A8MXD5 290 aa14.36□□□□□ -0.11
C9orf3-202ENST00000297979 LDB2O43679 373 aa14.36□□□□□ -0.11
C9orf3-202ENST00000297979 MOSPD3O75425 235 aa14.36□□□□□ -0.11
C9orf3-202ENST00000297979 KIAA0754O94854 1291 aa14.36□□□□□ -0.11
C9orf3-202ENST00000297979 MPOP05164 745 aa14.36□□□□□ -0.11
C9orf3-202ENST00000297979 CA3P07451 260 aa14.36□□□□□ -0.11
C9orf3-202ENST00000297979 MPP1Q00013 466 aa14.36□□□□□ -0.11
C9orf3-202ENST00000297979 GRM3Q14832 879 aa14.36□□□□□ -0.11
C9orf3-202ENST00000297979 INSCQ1MX18 579 aa14.36□□□□□ -0.11
C9orf3-202ENST00000297979 PPM1JQ5JR12 505 aa14.36□□□□□ -0.11
C9orf3-202ENST00000297979 N4BP2L1Q5TBK1 243 aaPredicted RBP14.36□□□□□ -0.11
C9orf3-202ENST00000297979 NEPROQ6NW34 567 aa14.36□□□□□ -0.11
C9orf3-202ENST00000297979 TPGS1Q6ZTW0 290 aa14.36□□□□□ -0.11
C9orf3-202ENST00000297979 C2CD4AQ8NCU7 369 aaPredicted RBP14.36□□□□□ -0.11
C9orf3-202ENST00000297979 CALML6Q8TD86 181 aa14.36□□□□□ -0.11
C9orf3-202ENST00000297979 BLOC1S5Q8TDH9 187 aa14.36□□□□□ -0.11
C9orf3-202ENST00000297979 SNRNP27Q8WVK2 155 aaKnown RBP14.36□□□□□ -0.11
C9orf3-202ENST00000297979 TDRD1Q9BXT4 1180 aaKnown RBP14.36□□□□□ -0.11
C9orf3-202ENST00000297979 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP14.36□□□□□ -0.11
C9orf3-202ENST00000297979 CCL26Q9Y258 94 aa14.36□□□□□ -0.11
C9orf3-202ENST00000297979 DOCK6Q96HP0 2047 aa14.36□□□□□ -0.11
C9orf3-202ENST00000297979 LAMA2P24043 3122 aaKnown RBP14.35□□□□□ -0.11
C9orf3-202ENST00000297979 AHSGP02765 367 aa14.35□□□□□ -0.11
C9orf3-202ENST00000297979 BGNP21810 368 aa14.35□□□□□ -0.11
C9orf3-202ENST00000297979 GABRB3P28472 473 aa14.35□□□□□ -0.11
C9orf3-202ENST00000297979 CTBP1Q13363 440 aa14.35□□□□□ -0.11
C9orf3-202ENST00000297979 NAIF1Q69YI7 327 aaPredicted RBP14.35□□□□□ -0.11
C9orf3-202ENST00000297979 YTHDF3Q7Z739 585 aaKnown RBP14.35□□□□□ -0.11
C9orf3-202ENST00000297979 TRIM42Q8IWZ5 723 aa14.35□□□□□ -0.11
C9orf3-202ENST00000297979 NSMCE3Q96MG7 304 aa14.35□□□□□ -0.11
C9orf3-202ENST00000297979 C2orf49Q9BVC5 232 aaPredicted RBP14.35□□□□□ -0.11
C9orf3-202ENST00000297979 CAB39LQ9H9S4 337 aa14.35□□□□□ -0.11
C9orf3-202ENST00000297979 PLK2Q9NYY3 685 aa14.35□□□□□ -0.11
C9orf3-202ENST00000297979 LHX3Q9UBR4 397 aa14.35□□□□□ -0.11
C9orf3-202ENST00000297979 BLOC1S6Q9UL45 172 aa14.35□□□□□ -0.11
C9orf3-202ENST00000297979 CHKBQ9Y259 395 aa14.35□□□□□ -0.11
C9orf3-202ENST00000297979 CYBBP04839 570 aa14.35□□□□□ -0.11
C9orf3-202ENST00000297979 SLC5A9Q2M3M2 681 aa14.35□□□□□ -0.11
C9orf3-202ENST00000297979 C9orf50Q5SZB4 431 aa14.35□□□□□ -0.11
C9orf3-202ENST00000297979 FYB2Q5VWT5 728 aa14.35□□□□□ -0.11
C9orf3-202ENST00000297979 FAM109BQ6ICB4 259 aaPredicted RBP14.35□□□□□ -0.11
C9orf3-202ENST00000297979 PDE12Q6L8Q7 609 aaKnown RBP14.35□□□□□ -0.11
C9orf3-202ENST00000297979 KIAA0408Q6ZU52 694 aa14.35□□□□□ -0.11
C9orf3-202ENST00000297979 CCDC63Q8NA47 563 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms