RNA–Protein interactions for RNA: ENST00000292535.11

CUX1-201, Transcript of cut like homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CUX1, Length 13,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-201ENST00000292535 DEF8Q6ZN54 512 aa9.38□□□□□ -0.91
CUX1-201ENST00000292535 ARCQ7LC44 396 aa9.38□□□□□ -0.91
CUX1-201ENST00000292535 ZSCAN2Q7Z7L9 614 aaPredicted RBP9.38□□□□□ -0.91
CUX1-201ENST00000292535 PSTKQ8IV42 348 aaKnown RBP9.38□□□□□ -0.91
CUX1-201ENST00000292535 FRMD6Q96NE9 622 aa9.38□□□□□ -0.91
CUX1-201ENST00000292535 RHBGQ9H310 441 aa9.38□□□□□ -0.91
CUX1-201ENST00000292535 SPATA31A5Q5VU36 1347 aa9.38□□□□□ -0.91
CUX1-201ENST00000292535 SPATA31A7Q8IWB4 1347 aa9.38□□□□□ -0.91
CUX1-201ENST00000292535 CLTCQ00610 1675 aaKnown RBP9.38□□□□□ -0.91
CUX1-201ENST00000292535 PRKAG1P54619 331 aa9.38□□□□□ -0.91
CUX1-201ENST00000292535 FKBP14Q9NWM8 211 aa9.38□□□□□ -0.91
CUX1-201ENST00000292535 ADARP55265 1226 aaKnown RBP9.38□□□□□ -0.91
CUX1-201ENST00000292535 PAIP1Q9H074 479 aaKnown RBP9.38□□□□□ -0.91
CUX1-201ENST00000292535 ACTL7BQ9Y614 415 aa9.38□□□□□ -0.91
CUX1-201ENST00000292535 LACTBL1A8MY62 500 aa9.38□□□□□ -0.91
CUX1-201ENST00000292535 ACKR2O00590 384 aa9.38□□□□□ -0.91
CUX1-201ENST00000292535 S100A6P06703 90 aa9.38□□□□□ -0.91
CUX1-201ENST00000292535 PRKAR2AP13861 404 aaKnown RBP9.38□□□□□ -0.91
CUX1-201ENST00000292535 AKT2P31751 481 aa9.38□□□□□ -0.91
CUX1-201ENST00000292535 MAPKAPK3Q16644 382 aa9.38□□□□□ -0.91
CUX1-201ENST00000292535 NDUFA9Q16795 377 aa9.38□□□□□ -0.91
CUX1-201ENST00000292535 RASSF6Q6ZTQ3 369 aa9.38□□□□□ -0.91
CUX1-201ENST00000292535 SEMA4BQ9NPR2 832 aaPredicted RBP9.38□□□□□ -0.91
CUX1-201ENST00000292535 ZNF638Q14966 1978 aaKnown RBP9.38□□□□□ -0.91
CUX1-201ENST00000292535 SNX4O95219 450 aa9.38□□□□□ -0.91
CUX1-201ENST00000292535 PROCP04070 461 aa9.38□□□□□ -0.91
CUX1-201ENST00000292535 CCNB1P14635 433 aa9.38□□□□□ -0.91
CUX1-201ENST00000292535 ELK3P41970 407 aa9.38□□□□□ -0.91
CUX1-201ENST00000292535 HSPA14Q0VDF9 509 aa9.38□□□□□ -0.91
CUX1-201ENST00000292535 GPRIN3Q6ZVF9 776 aa9.38□□□□□ -0.91
CUX1-201ENST00000292535 MDM4O15151 490 aa9.38□□□□□ -0.91
CUX1-201ENST00000292535 IDO1P14902 403 aa9.38□□□□□ -0.91
CUX1-201ENST00000292535 CTNNB1P35222 781 aa9.38□□□□□ -0.91
CUX1-201ENST00000292535 TCAIMQ8N3R3 496 aa9.38□□□□□ -0.91
CUX1-201ENST00000292535 OSBPL11Q9BXB4 747 aa9.38□□□□□ -0.91
CUX1-201ENST00000292535 KIAA1683Q9H0B3 1180 aa9.38□□□□□ -0.91
CUX1-201ENST00000292535 CRISPLD1Q9H336 500 aa9.38□□□□□ -0.91
CUX1-201ENST00000292535 NTRK1P04629 796 aa9.38□□□□□ -0.91
CUX1-201ENST00000292535 SLC35G4P0C7Q5 338 aa9.38□□□□□ -0.91
CUX1-201ENST00000292535 HDCP19113 662 aa9.38□□□□□ -0.91
CUX1-201ENST00000292535 ATP13A5Q4VNC0 1218 aa9.38□□□□□ -0.91
CUX1-201ENST00000292535 ZNF558Q96NG5 402 aa9.38□□□□□ -0.91
CUX1-201ENST00000292535 SLC4A5Q9BY07 1137 aa9.38□□□□□ -0.91
CUX1-201ENST00000292535 MIR1-1HGQ9H1L0 117 aa9.38□□□□□ -0.91
CUX1-201ENST00000292535 DCXO43602 365 aa9.38□□□□□ -0.91
CUX1-201ENST00000292535 NR2F1P10589 423 aa9.38□□□□□ -0.91
CUX1-201ENST00000292535 AMPD1P23109 780 aa9.38□□□□□ -0.91
CUX1-201ENST00000292535 TNK2Q07912 1038 aa9.38□□□□□ -0.91
CUX1-201ENST00000292535 ZNF571Q7Z3V5 609 aaPredicted RBP9.38□□□□□ -0.91
CUX1-201ENST00000292535 CLVS1Q8IUQ0 354 aaPredicted RBP9.38□□□□□ -0.91
CUX1-201ENST00000292535 MAT2BQ9NZL9 334 aa9.38□□□□□ -0.91
CUX1-201ENST00000292535 INO80Q9ULG1 1556 aaPredicted RBP9.38□□□□□ -0.91
CUX1-201ENST00000292535 RPL21P46778 160 aaKnown RBP9.38□□□□□ -0.91
CUX1-201ENST00000292535 ZPBP2Q6X784 338 aa9.38□□□□□ -0.91
CUX1-201ENST00000292535 BEND5Q7L4P6 421 aa9.38□□□□□ -0.91
CUX1-201ENST00000292535 KBTBD4Q9NVX7 518 aa9.38□□□□□ -0.91
CUX1-201ENST00000292535 COLEC10Q9Y6Z7 277 aa9.38□□□□□ -0.91
CUX1-201ENST00000292535 ADGRB3O60242 1522 aa9.38□□□□□ -0.91
CUX1-201ENST00000292535 ZNF879B4DU55 563 aa9.38□□□□□ -0.91
CUX1-201ENST00000292535 HGFP14210 728 aa9.38□□□□□ -0.91
CUX1-201ENST00000292535 ERCC2P18074 760 aa9.38□□□□□ -0.91
CUX1-201ENST00000292535 PAPD7Q5XG87 772 aaKnown RBP9.38□□□□□ -0.91
CUX1-201ENST00000292535 CHSY3Q70JA7 882 aa9.38□□□□□ -0.91
CUX1-201ENST00000292535 HIPK1Q86Z02 1210 aa9.38□□□□□ -0.91
CUX1-201ENST00000292535 LEF1Q9UJU2 399 aaPredicted RBP9.38□□□□□ -0.91
CUX1-201ENST00000292535 CXCL11O14625 94 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 NOS2P35228 1153 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 DNASE1L1P49184 302 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 ELP6Q0PNE2 266 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 SLC9A6Q92581 669 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 RNF208Q9H0X6 261 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 H3BQF6 201 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 SUV39H1O43463 412 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 AKAP3O75969 853 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 SEMA3DO95025 777 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 SLC25A14O95258 325 aaPredicted RBP9.37□□□□□ -0.91
CUX1-201ENST00000292535 SLC6A2P23975 617 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 PYHIN1Q6K0P9 492 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 C18orf25Q96B23 403 aaPredicted RBP9.37□□□□□ -0.91
CUX1-201ENST00000292535 HTATIP2Q9BUP3 242 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 SPATA9Q9BWV2 254 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 OSGEPQ9NPF4 335 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 ABHD14A-ACY1A0A1B0GW23 586 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 CCNYL3P0C7X3 344 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 NAIF1Q69YI7 327 aaPredicted RBP9.37□□□□□ -0.91
CUX1-201ENST00000292535 NYAP1Q6ZVC0 841 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 OR5T3Q8NGG3 340 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 ITCHQ96J02 903 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 SENP8Q96LD8 212 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 PKDREJQ9NTG1 2253 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 TRIP11Q15643 1979 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 PSEN2P49810 448 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 AP3S2P59780 193 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 TXNDC11Q6PKC3 985 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 FBXO28Q9NVF7 368 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 STOML2Q9UJZ1 356 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 NAALADL1Q9UQQ1 740 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 SETBP1Q9Y6X0 1596 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 PLK1P53350 603 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 SPIBQ01892 262 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms