RNA–Protein interactions for RNA: ENST00000288344.14

HMGN1-201, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 1,303 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-201ENST00000288344 TMEM131Q92545 1883 aa9.27□□□□□ -0.93
HMGN1-201ENST00000288344 TTC24A2A3L6 582 aaPredicted RBP9.26□□□□□ -0.93
HMGN1-201ENST00000288344 C4orf47A7E2U8 309 aa9.26□□□□□ -0.93
HMGN1-201ENST00000288344 KPNA3O00505 521 aaPredicted RBP9.26□□□□□ -0.93
HMGN1-201ENST00000288344 MATN3O15232 486 aa9.26□□□□□ -0.93
HMGN1-201ENST00000288344 RAD51BO15315 384 aa9.26□□□□□ -0.93
HMGN1-201ENST00000288344 DAPK3O43293 454 aa9.26□□□□□ -0.93
HMGN1-201ENST00000288344 BNIP3LO60238 219 aa9.26□□□□□ -0.93
HMGN1-201ENST00000288344 CBFA2T3O75081 653 aa9.26□□□□□ -0.93
HMGN1-201ENST00000288344 PALMO75781 387 aa9.26□□□□□ -0.93
HMGN1-201ENST00000288344 PRLP01236 227 aa9.26□□□□□ -0.93
HMGN1-201ENST00000288344 ZNF883P0CG24 379 aa9.26□□□□□ -0.93
HMGN1-201ENST00000288344 NUDT1P36639 197 aa9.26□□□□□ -0.93
HMGN1-201ENST00000288344 ID4P47928 161 aa9.26□□□□□ -0.93
HMGN1-201ENST00000288344 CSNK1EP49674 416 aaKnown RBP9.26□□□□□ -0.93
HMGN1-201ENST00000288344 NEK3P51956 506 aa9.26□□□□□ -0.93
HMGN1-201ENST00000288344 SH3BP2P78314 561 aa9.26□□□□□ -0.93
HMGN1-201ENST00000288344 GRIK2Q13002 908 aa9.26□□□□□ -0.93
HMGN1-201ENST00000288344 LBRQ14739 615 aaKnown RBP9.26□□□□□ -0.93
HMGN1-201ENST00000288344 AGERQ15109 404 aa9.26□□□□□ -0.93
HMGN1-201ENST00000288344 UGP2Q16851 508 aa9.26□□□□□ -0.93
HMGN1-201ENST00000288344 ZNF423Q2M1K9 1284 aa9.26□□□□□ -0.93
HMGN1-201ENST00000288344 KIF19Q2TAC6 998 aa9.26□□□□□ -0.93
HMGN1-201ENST00000288344 TMEM52BQ4KMG9 183 aa9.26□□□□□ -0.93
HMGN1-201ENST00000288344 CRTC2Q53ET0 693 aaPredicted RBP9.26□□□□□ -0.93
HMGN1-201ENST00000288344 TMCO4Q5TGY1 634 aa9.26□□□□□ -0.93
HMGN1-201ENST00000288344 SEL1L3Q68CR1 1132 aa9.26□□□□□ -0.93
HMGN1-201ENST00000288344 KANSL1Q7Z3B3 1105 aa9.26□□□□□ -0.93
HMGN1-201ENST00000288344 RABEPKQ7Z6M1 372 aa9.26□□□□□ -0.93
HMGN1-201ENST00000288344 NT5DC3Q86UY8 548 aa9.26□□□□□ -0.93
HMGN1-201ENST00000288344 HORMAD1Q86X24 394 aa9.26□□□□□ -0.93
HMGN1-201ENST00000288344 SPATS2Q86XZ4 545 aaKnown RBP9.26□□□□□ -0.93
HMGN1-201ENST00000288344 CAMK1DQ8IU85 385 aa9.26□□□□□ -0.93
HMGN1-201ENST00000288344 MAP7D3Q8IWC1 876 aa9.26□□□□□ -0.93
HMGN1-201ENST00000288344 RHOT1Q8IXI2 618 aa9.26□□□□□ -0.93
HMGN1-201ENST00000288344 ZCCHC9Q8N567 271 aaKnown RBP9.26□□□□□ -0.93
HMGN1-201ENST00000288344 SPC24Q8NBT2 197 aa9.26□□□□□ -0.93
HMGN1-201ENST00000288344 OR2I1PQ8NGU4 316 aa9.26□□□□□ -0.93
HMGN1-201ENST00000288344 RAB7BQ96AH8 199 aa9.26□□□□□ -0.93
HMGN1-201ENST00000288344 HDAC11Q96DB2 347 aa9.26□□□□□ -0.93
HMGN1-201ENST00000288344 EXOC2Q96KP1 924 aa9.26□□□□□ -0.93
HMGN1-201ENST00000288344 CCDC114Q96M63 670 aa9.26□□□□□ -0.93
HMGN1-201ENST00000288344 GDAP1L1Q96MZ0 367 aa9.26□□□□□ -0.93
HMGN1-201ENST00000288344 SLC6A18Q96N87 628 aa9.26□□□□□ -0.93
HMGN1-201ENST00000288344 TUBGCP5Q96RT8 1024 aa9.26□□□□□ -0.93
HMGN1-201ENST00000288344 IL12RB2Q99665 862 aa9.26□□□□□ -0.93
HMGN1-201ENST00000288344 RTKNQ9BST9 563 aa9.26□□□□□ -0.93
HMGN1-201ENST00000288344 ZDHHC5Q9C0B5 715 aa9.26□□□□□ -0.93
HMGN1-201ENST00000288344 IL21RQ9HBE5 538 aa9.26□□□□□ -0.93
HMGN1-201ENST00000288344 NOD2Q9HC29 1040 aa9.26□□□□□ -0.93
HMGN1-201ENST00000288344 TRIM10Q9UDY6 481 aa9.26□□□□□ -0.93
HMGN1-201ENST00000288344 SUSD2Q9UGT4 822 aa9.26□□□□□ -0.93
HMGN1-201ENST00000288344 GGT7Q9UJ14 662 aa9.26□□□□□ -0.93
HMGN1-201ENST00000288344 DMTF1Q9Y222 760 aa9.26□□□□□ -0.93
HMGN1-201ENST00000288344 ATP8A1Q9Y2Q0 1164 aa9.26□□□□□ -0.93
HMGN1-201ENST00000288344 AKAP13Q12802 2813 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 TBC1D3DA0A087WVF3 549 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 TBC1D3IA0A087WXS9 549 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 TBC1D3EA0A087X179 549 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 TBC1D3KA0A087X1G2 549 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 A0A1B0GVT2 93 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 A0A1W2PQU0 124 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 TBC1D3FA6NER0 549 aaPredicted RBP9.25□□□□□ -0.93
HMGN1-201ENST00000288344 TMEM110-MUSTN1A8MSY1 372 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 TBC1D3LB9A6J9 549 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 DFFAO00273 331 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 KRIT1O00522 736 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 PSTPIP1O43586 416 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 RNGTTO60942 597 aaKnown RBP9.25□□□□□ -0.93
HMGN1-201ENST00000288344 FSBPO95073 299 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 PIGNO95427 931 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 UGT2B4P06133 528 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 MMP2P08253 660 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 TBC1D3HP0C7X1 549 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 SDHBP21912 280 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 CTNNA2P26232 953 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 CTNNA1P35221 906 aaKnown RBP9.25□□□□□ -0.93
HMGN1-201ENST00000288344 SLC19A1P41440 591 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 RECQLP46063 649 aaPredicted RBP9.25□□□□□ -0.93
HMGN1-201ENST00000288344 RXRGP48443 463 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 DNA2P51530 1060 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 SUOXP51687 545 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 AFF3P51826 1226 aaKnown RBP9.25□□□□□ -0.93
HMGN1-201ENST00000288344 RHOAP61586 193 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 CCZ1BP86790 482 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 CCZ1P86791 482 aaPredicted RBP9.25□□□□□ -0.93
HMGN1-201ENST00000288344 PPIDQ08752 370 aaKnown RBP9.25□□□□□ -0.93
HMGN1-201ENST00000288344 NIPAL4Q0D2K0 466 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 RALGDSQ12967 914 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 SPA17Q15506 151 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 IFI16Q16666 785 aaKnown RBP9.25□□□□□ -0.93
HMGN1-201ENST00000288344 HLA-BQ31612 363 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 RALGPS1Q5JS13 557 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 FAM182AQ5T1J6 154 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 TBC1D3GQ6DHY5 549 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 TBC1D3CQ6IPX1 549 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 LAYNQ6UX15 382 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 ABI3BPQ7Z7G0 1075 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 IQCHQ86VS3 1027 aa9.25□□□□□ -0.93
HMGN1-201ENST00000288344 LRRC8AQ8IWT6 810 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms