RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 KDM1BQ8NB78 822 aa12.75□□□□□ -0.37
LIG1-201ENST00000263274 ADCY4Q8NFM4 1077 aa12.75□□□□□ -0.37
LIG1-201ENST00000263274 SLC45A3Q96JT2 553 aa12.75□□□□□ -0.37
LIG1-201ENST00000263274 DCUN1D5Q9BTE7 237 aa12.75□□□□□ -0.37
LIG1-201ENST00000263274 EFHD1Q9BUP0 239 aa12.75□□□□□ -0.37
LIG1-201ENST00000263274 GLOD4Q9HC38 313 aa12.75□□□□□ -0.37
LIG1-201ENST00000263274 NDFIP2Q9NV92 336 aa12.75□□□□□ -0.37
LIG1-201ENST00000263274 SRP72O76094 671 aaKnown RBP12.74□□□□□ -0.37
LIG1-201ENST00000263274 F9P00740 461 aa12.74□□□□□ -0.37
LIG1-201ENST00000263274 UGT1A6P19224 532 aa12.74□□□□□ -0.37
LIG1-201ENST00000263274 ATP5F1P24539 256 aaPredicted RBP12.74□□□□□ -0.37
LIG1-201ENST00000263274 SCNN1AP37088 669 aa12.74□□□□□ -0.37
LIG1-201ENST00000263274 PPIL2Q13356 520 aa12.74□□□□□ -0.37
LIG1-201ENST00000263274 FUT11Q495W5 492 aa12.74□□□□□ -0.37
LIG1-201ENST00000263274 MAMDC4Q6UXC1 1216 aa12.74□□□□□ -0.37
LIG1-201ENST00000263274 TSPAN14Q8NG11 270 aa12.74□□□□□ -0.37
LIG1-201ENST00000263274 TMIGD2Q96BF3 282 aa12.74□□□□□ -0.37
LIG1-201ENST00000263274 TINF2Q9BSI4 451 aa12.74□□□□□ -0.37
LIG1-201ENST00000263274 YIPF2Q9BWQ6 316 aa12.74□□□□□ -0.37
LIG1-201ENST00000263274 SLC39A8Q9C0K1 460 aa12.74□□□□□ -0.37
LIG1-201ENST00000263274 NDUFA13Q9P0J0 144 aa12.74□□□□□ -0.37
LIG1-201ENST00000263274 CCL15-CCL14A0A0B4J2E2 113 aa12.74□□□□□ -0.37
LIG1-201ENST00000263274 NAT1P18440 290 aa12.74□□□□□ -0.37
LIG1-201ENST00000263274 GRIK1P39086 918 aa12.74□□□□□ -0.37
LIG1-201ENST00000263274 KPNA2P52292 529 aaKnown RBP12.74□□□□□ -0.37
LIG1-201ENST00000263274 INHBCP55103 352 aa12.74□□□□□ -0.37
LIG1-201ENST00000263274 PLIN5Q00G26 463 aa12.74□□□□□ -0.37
LIG1-201ENST00000263274 CCL15Q16663 113 aa12.74□□□□□ -0.37
LIG1-201ENST00000263274 GPR158Q5T848 1215 aa12.74□□□□□ -0.37
LIG1-201ENST00000263274 AGAP9Q5VTM2 703 aa12.74□□□□□ -0.37
LIG1-201ENST00000263274 MFSD6LQ8IWD5 586 aa12.74□□□□□ -0.37
LIG1-201ENST00000263274 DQX1Q8TE96 717 aaKnown RBP12.74□□□□□ -0.37
LIG1-201ENST00000263274 MYLPFQ96A32 169 aa12.74□□□□□ -0.37
LIG1-201ENST00000263274 RRAGCQ9HB90 399 aa12.74□□□□□ -0.37
LIG1-201ENST00000263274 CNGB3Q9NQW8 809 aa12.74□□□□□ -0.37
LIG1-201ENST00000263274 RIMS3Q9UJD0 308 aa12.74□□□□□ -0.37
LIG1-201ENST00000263274 CROTQ9UKG9 612 aa12.74□□□□□ -0.37
LIG1-201ENST00000263274 RAB26Q9ULW5 256 aa12.74□□□□□ -0.37
LIG1-201ENST00000263274 FAF1Q9UNN5 650 aaPredicted RBP12.74□□□□□ -0.37
LIG1-201ENST00000263274 PTGDR2Q9Y5Y4 395 aa12.74□□□□□ -0.37
LIG1-201ENST00000263274 UBA6A0AVT1 1052 aaPredicted RBP12.73□□□□□ -0.37
LIG1-201ENST00000263274 CASQ2O14958 399 aaPredicted RBP12.73□□□□□ -0.37
LIG1-201ENST00000263274 MT-ND1P03886 318 aa12.73□□□□□ -0.37
LIG1-201ENST00000263274 THP07101 528 aa12.73□□□□□ -0.37
LIG1-201ENST00000263274 SMIM18P0DKX4 95 aa12.73□□□□□ -0.37
LIG1-201ENST00000263274 MAPK10P53779 464 aa12.73□□□□□ -0.37
LIG1-201ENST00000263274 C1QTNF8P60827 252 aa12.73□□□□□ -0.37
LIG1-201ENST00000263274 GALNT2Q10471 571 aa12.73□□□□□ -0.37
LIG1-201ENST00000263274 TRIM25Q14258 630 aaKnown RBP12.73□□□□□ -0.37
LIG1-201ENST00000263274 CAPRIN1Q14444 709 aaKnown RBP12.73□□□□□ -0.37
LIG1-201ENST00000263274 MFSD10Q14728 455 aa12.73□□□□□ -0.37
LIG1-201ENST00000263274 ZNF792Q3KQV3 632 aa12.73□□□□□ -0.37
LIG1-201ENST00000263274 MGAT5BQ3V5L5 792 aa12.73□□□□□ -0.37
LIG1-201ENST00000263274 KCTD11Q693B1 232 aa12.73□□□□□ -0.37
LIG1-201ENST00000263274 PIWIL4Q7Z3Z4 852 aaKnown RBP12.73□□□□□ -0.37
LIG1-201ENST00000263274 MARVELD2Q8N4S9 558 aa12.73□□□□□ -0.37
LIG1-201ENST00000263274 ZMIZ2Q8NF64 920 aa12.73□□□□□ -0.37
LIG1-201ENST00000263274 EMID1Q96A84 441 aaPredicted RBP12.73□□□□□ -0.37
LIG1-201ENST00000263274 CNDP1Q96KN2 507 aa12.73□□□□□ -0.37
LIG1-201ENST00000263274 RPL10LQ96L21 214 aaKnown RBP12.73□□□□□ -0.37
LIG1-201ENST00000263274 ZNF512Q96ME7 567 aaPredicted RBP12.73□□□□□ -0.37
LIG1-201ENST00000263274 VAT1Q99536 393 aa12.73□□□□□ -0.37
LIG1-201ENST00000263274 MRPL57Q9BQC6 102 aaKnown RBP12.73□□□□□ -0.37
LIG1-201ENST00000263274 CCDC28BQ9BUN5 200 aa12.73□□□□□ -0.37
LIG1-201ENST00000263274 C1QTNF1Q9BXJ1 281 aa12.73□□□□□ -0.37
LIG1-201ENST00000263274 MTF2Q9Y483 593 aaPredicted RBP12.73□□□□□ -0.37
LIG1-201ENST00000263274 COL1A2P08123 1366 aa12.73□□□□□ -0.37
LIG1-201ENST00000263274 PDLIM1O00151 329 aa12.73□□□□□ -0.37
LIG1-201ENST00000263274 BCAS2O75934 225 aaPredicted RBP12.73□□□□□ -0.37
LIG1-201ENST00000263274 TMCC1O94876 653 aa12.73□□□□□ -0.37
LIG1-201ENST00000263274 HADHAP40939 763 aa12.73□□□□□ -0.37
LIG1-201ENST00000263274 REP15Q6BDI9 236 aa12.73□□□□□ -0.37
LIG1-201ENST00000263274 SCIMPQ6UWF3 145 aa12.73□□□□□ -0.37
LIG1-201ENST00000263274 TOP6BLQ8N6T0 577 aa12.73□□□□□ -0.37
LIG1-201ENST00000263274 RDH11Q8TC12 318 aa12.73□□□□□ -0.37
LIG1-201ENST00000263274 CYGBQ8WWM9 190 aa12.73□□□□□ -0.37
LIG1-201ENST00000263274 FCRL2Q96LA5 508 aaPredicted RBP12.73□□□□□ -0.37
LIG1-201ENST00000263274 PRICKLE1Q96MT3 831 aaPredicted RBP12.73□□□□□ -0.37
LIG1-201ENST00000263274 SLC2A13Q96QE2 648 aa12.73□□□□□ -0.37
LIG1-201ENST00000263274 SLC29A1Q99808 456 aa12.73□□□□□ -0.37
LIG1-201ENST00000263274 ABHD16BQ9H3Z7 469 aa12.73□□□□□ -0.37
LIG1-201ENST00000263274 TNFRSF12AQ9NP84 129 aa12.73□□□□□ -0.37
LIG1-201ENST00000263274 TMCO1Q9UM00 188 aa12.73□□□□□ -0.37
LIG1-201ENST00000263274 CROCCQ5TZA2 2017 aa12.73□□□□□ -0.37
LIG1-201ENST00000263274 NCF1BA6NI72 391 aaPredicted RBP12.73□□□□□ -0.37
LIG1-201ENST00000263274 NCF1CA8MVU1 366 aaPredicted RBP12.73□□□□□ -0.37
LIG1-201ENST00000263274 M0QZ92 97 aa12.73□□□□□ -0.37
LIG1-201ENST00000263274 PTGESO14684 152 aa12.73□□□□□ -0.37
LIG1-201ENST00000263274 PAGE1O75459 146 aa12.73□□□□□ -0.37
LIG1-201ENST00000263274 HLA-DQB2P05538 268 aa12.73□□□□□ -0.37
LIG1-201ENST00000263274 SNRPB2P08579 225 aaKnown RBP12.73□□□□□ -0.37
LIG1-201ENST00000263274 GFAPP14136 432 aa12.73□□□□□ -0.37
LIG1-201ENST00000263274 NCF1P14598 390 aaPredicted RBP12.73□□□□□ -0.37
LIG1-201ENST00000263274 WARSP23381 471 aaKnown RBP12.73□□□□□ -0.37
LIG1-201ENST00000263274 GALK1P51570 392 aa12.73□□□□□ -0.37
LIG1-201ENST00000263274 GEMP55040 296 aa12.73□□□□□ -0.37
LIG1-201ENST00000263274 WNT3AP56704 352 aa12.73□□□□□ -0.37
LIG1-201ENST00000263274 PTPRCAPQ14761 206 aa12.73□□□□□ -0.37
LIG1-201ENST00000263274 PIM3Q86V86 326 aa12.73□□□□□ -0.37
LIG1-201ENST00000263274 BLOC1S5Q8TDH9 187 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms