RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 PSME4Q14997 1843 aa14.47□□□□□ -0.09
SDC1-201ENST00000254351 NRP2O60462 931 aa14.47□□□□□ -0.09
SDC1-201ENST00000254351 RSL1D1O76021 490 aaKnown RBP14.47□□□□□ -0.09
SDC1-201ENST00000254351 TPTEP56180 551 aa14.47□□□□□ -0.09
SDC1-201ENST00000254351 DCLRE1AQ6PJP8 1040 aa14.47□□□□□ -0.09
SDC1-201ENST00000254351 RNF19BQ6ZMZ0 732 aa14.47□□□□□ -0.09
SDC1-201ENST00000254351 RETREG3Q86VR2 466 aa14.47□□□□□ -0.09
SDC1-201ENST00000254351 ALDH16A1Q8IZ83 802 aa14.47□□□□□ -0.09
SDC1-201ENST00000254351 CADM3Q8N126 398 aa14.47□□□□□ -0.09
SDC1-201ENST00000254351 TMEM151AQ8N4L1 468 aa14.47□□□□□ -0.09
SDC1-201ENST00000254351 DHRSXQ8N5I4 330 aa14.47□□□□□ -0.09
SDC1-201ENST00000254351 MUS81Q96NY9 551 aa14.47□□□□□ -0.09
SDC1-201ENST00000254351 MRIQ9BWK5 157 aa14.47□□□□□ -0.09
SDC1-201ENST00000254351 NT5C1AQ9BXI3 368 aa14.47□□□□□ -0.09
SDC1-201ENST00000254351 CDT1Q9H211 546 aa14.47□□□□□ -0.09
SDC1-201ENST00000254351 LTBP3Q9NS15 1303 aa14.47□□□□□ -0.09
SDC1-201ENST00000254351 PPP6CO00743 305 aa14.47□□□□□ -0.09
SDC1-201ENST00000254351 CNOT3O75175 753 aaKnown RBP14.47□□□□□ -0.09
SDC1-201ENST00000254351 GMNNO75496 209 aa14.47□□□□□ -0.09
SDC1-201ENST00000254351 PIGRP01833 764 aa14.47□□□□□ -0.09
SDC1-201ENST00000254351 MPOP05164 745 aa14.47□□□□□ -0.09
SDC1-201ENST00000254351 AP3M2P53677 418 aa14.47□□□□□ -0.09
SDC1-201ENST00000254351 HMGCS2P54868 508 aa14.47□□□□□ -0.09
SDC1-201ENST00000254351 TPD52P55327 224 aaPredicted RBP14.47□□□□□ -0.09
SDC1-201ENST00000254351 CLCQ05315 142 aa14.47□□□□□ -0.09
SDC1-201ENST00000254351 POLD3Q15054 466 aaPredicted RBP14.47□□□□□ -0.09
SDC1-201ENST00000254351 SURF1Q15526 300 aa14.47□□□□□ -0.09
SDC1-201ENST00000254351 PLA2G4EQ3MJ16 856 aa14.47□□□□□ -0.09
SDC1-201ENST00000254351 RABL3Q5HYI8 236 aa14.47□□□□□ -0.09
SDC1-201ENST00000254351 MPZL3Q6UWV2 235 aa14.47□□□□□ -0.09
SDC1-201ENST00000254351 ABRAXAS1Q6UWZ7 409 aa14.47□□□□□ -0.09
SDC1-201ENST00000254351 DNAJC14Q6Y2X3 702 aaPredicted RBP14.47□□□□□ -0.09
SDC1-201ENST00000254351 SPATA22Q8NHS9 363 aa14.47□□□□□ -0.09
SDC1-201ENST00000254351 ACOT9Q9Y305 439 aa14.47□□□□□ -0.09
SDC1-201ENST00000254351 FAM72CH0Y354 149 aa14.46□□□□□ -0.09
SDC1-201ENST00000254351 CCL22O00626 93 aa14.46□□□□□ -0.09
SDC1-201ENST00000254351 NME4O00746 187 aa14.46□□□□□ -0.09
SDC1-201ENST00000254351 WDR46O15213 610 aaKnown RBP14.46□□□□□ -0.09
SDC1-201ENST00000254351 IL18RAPO95256 599 aa14.46□□□□□ -0.09
SDC1-201ENST00000254351 HSPA8P11142 646 aaKnown RBP14.46□□□□□ -0.09
SDC1-201ENST00000254351 IL10P22301 178 aa14.46□□□□□ -0.09
SDC1-201ENST00000254351 FASP25445 335 aa14.46□□□□□ -0.09
SDC1-201ENST00000254351 MOGQ16653 247 aa14.46□□□□□ -0.09
SDC1-201ENST00000254351 FAM72AQ5TYM5 149 aa14.46□□□□□ -0.09
SDC1-201ENST00000254351 FAM72DQ6L9T8 149 aa14.46□□□□□ -0.09
SDC1-201ENST00000254351 NIPAL1Q6NVV3 410 aa14.46□□□□□ -0.09
SDC1-201ENST00000254351 TBPL2Q6SJ96 375 aa14.46□□□□□ -0.09
SDC1-201ENST00000254351 OTOP3Q7RTS5 596 aa14.46□□□□□ -0.09
SDC1-201ENST00000254351 ERMP1Q7Z2K6 904 aa14.46□□□□□ -0.09
SDC1-201ENST00000254351 FAM72BQ86X60 149 aa14.46□□□□□ -0.09
SDC1-201ENST00000254351 EMID1Q96A84 441 aaPredicted RBP14.46□□□□□ -0.09
SDC1-201ENST00000254351 CSF3RQ99062 836 aa14.46□□□□□ -0.09
SDC1-201ENST00000254351 LHPPQ9H008 270 aa14.46□□□□□ -0.09
SDC1-201ENST00000254351 ERGIC3Q9Y282 383 aa14.46□□□□□ -0.09
SDC1-201ENST00000254351 NUP205Q92621 2012 aa14.46□□□□□ -0.09
SDC1-201ENST00000254351 CNTNAP1P78357 1384 aa14.46□□□□□ -0.09
SDC1-201ENST00000254351 H3BMM5 538 aa14.46□□□□□ -0.09
SDC1-201ENST00000254351 PSMD11O00231 422 aa14.46□□□□□ -0.09
SDC1-201ENST00000254351 TRIM24O15164 1050 aa14.46□□□□□ -0.09
SDC1-201ENST00000254351 DYNC1LI2O43237 492 aaPredicted RBP14.46□□□□□ -0.09
SDC1-201ENST00000254351 HUS1O60921 280 aa14.46□□□□□ -0.09
SDC1-201ENST00000254351 PGK1P00558 417 aa14.46□□□□□ -0.09
SDC1-201ENST00000254351 PSMA4P25789 261 aaKnown RBP14.46□□□□□ -0.09
SDC1-201ENST00000254351 SULT1E1P49888 294 aa14.46□□□□□ -0.09
SDC1-201ENST00000254351 SPCS2Q15005 226 aa14.46□□□□□ -0.09
SDC1-201ENST00000254351 KCNJ8Q15842 424 aa14.46□□□□□ -0.09
SDC1-201ENST00000254351 SPANXN3Q5MJ09 141 aa14.46□□□□□ -0.09
SDC1-201ENST00000254351 TSTD2Q5T7W7 516 aa14.46□□□□□ -0.09
SDC1-201ENST00000254351 CLEC14AQ86T13 490 aa14.46□□□□□ -0.09
SDC1-201ENST00000254351 LDB1Q86U70 411 aaPredicted RBP14.46□□□□□ -0.09
SDC1-201ENST00000254351 CPSF7Q8N684 471 aaKnown RBP14.46□□□□□ -0.09
SDC1-201ENST00000254351 SMG8Q8ND04 991 aaKnown RBP14.46□□□□□ -0.09
SDC1-201ENST00000254351 HEXDCQ8WVB3 486 aa14.46□□□□□ -0.09
SDC1-201ENST00000254351 HTRA1Q92743 480 aa14.46□□□□□ -0.09
SDC1-201ENST00000254351 VPS33AQ96AX1 596 aa14.46□□□□□ -0.09
SDC1-201ENST00000254351 PCYT2Q99447 389 aa14.46□□□□□ -0.09
SDC1-201ENST00000254351 BCO2Q9BYV7 579 aa14.46□□□□□ -0.09
SDC1-201ENST00000254351 ZNF385DQ9H6B1 395 aa14.46□□□□□ -0.09
SDC1-201ENST00000254351 SLC2A6Q9UGQ3 507 aa14.46□□□□□ -0.09
SDC1-201ENST00000254351 VPS28Q9UK41 221 aa14.46□□□□□ -0.09
SDC1-201ENST00000254351 CNOT11Q9UKZ1 510 aaKnown RBP14.46□□□□□ -0.09
SDC1-201ENST00000254351 TCRBV3S1A0A5B6 114 aa14.46□□□□□ -0.1
SDC1-201ENST00000254351 KPNA6O60684 536 aa14.46□□□□□ -0.1
SDC1-201ENST00000254351 SULT1C4O75897 302 aa14.46□□□□□ -0.1
SDC1-201ENST00000254351 SUPT7LO94864 414 aa14.46□□□□□ -0.1
SDC1-201ENST00000254351 ZPBP2Q6X784 338 aa14.46□□□□□ -0.1
SDC1-201ENST00000254351 C14orf80Q86SX3 495 aa14.46□□□□□ -0.1
SDC1-201ENST00000254351 MFSD6LQ8IWD5 586 aa14.46□□□□□ -0.1
SDC1-201ENST00000254351 CHPT1Q8WUD6 406 aa14.46□□□□□ -0.1
SDC1-201ENST00000254351 CAPSLQ8WWF8 208 aa14.46□□□□□ -0.1
SDC1-201ENST00000254351 SNX19Q92543 992 aa14.46□□□□□ -0.1
SDC1-201ENST00000254351 IPO11Q9UI26 975 aaKnown RBP14.46□□□□□ -0.1
SDC1-201ENST00000254351 AXIN1O15169 862 aa14.45□□□□□ -0.1
SDC1-201ENST00000254351 ALDH2P05091 517 aa14.45□□□□□ -0.1
SDC1-201ENST00000254351 NFKB1P19838 968 aa14.45□□□□□ -0.1
SDC1-201ENST00000254351 LAMC2Q13753 1193 aa14.45□□□□□ -0.1
SDC1-201ENST00000254351 SAMD4BQ5PRF9 694 aaKnown RBP14.45□□□□□ -0.1
SDC1-201ENST00000254351 TNIP2Q8NFZ5 429 aa14.45□□□□□ -0.1
SDC1-201ENST00000254351 RDM1Q8NG50 284 aa14.45□□□□□ -0.1
SDC1-201ENST00000254351 C3orf30Q96M34 536 aa14.45□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms