RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 LRRC74AQ0VAA2 488 aa13.75□□□□□ -0.21
LDLR-201ENST00000252444 PRSS55Q6UWB4 352 aaPredicted RBP13.75□□□□□ -0.21
LDLR-201ENST00000252444 LMO3Q8TAP4 145 aa13.75□□□□□ -0.21
LDLR-201ENST00000252444 IRF7Q92985 503 aa13.75□□□□□ -0.21
LDLR-201ENST00000252444 MAN1C1Q9NR34 630 aa13.75□□□□□ -0.21
LDLR-201ENST00000252444 ATAD3AQ9NVI7 634 aa13.75□□□□□ -0.21
LDLR-201ENST00000252444 OGDHLQ9ULD0 1010 aa13.75□□□□□ -0.21
LDLR-201ENST00000252444 RAI2Q9Y5P3 530 aa13.75□□□□□ -0.21
LDLR-201ENST00000252444 C1orf232A0A0U1RR37 186 aa13.75□□□□□ -0.21
LDLR-201ENST00000252444 H3BM21 787 aa13.75□□□□□ -0.21
LDLR-201ENST00000252444 STBD1O95210 358 aa13.75□□□□□ -0.21
LDLR-201ENST00000252444 GJB6O95452 261 aa13.75□□□□□ -0.21
LDLR-201ENST00000252444 CTSEP14091 401 aa13.75□□□□□ -0.21
LDLR-201ENST00000252444 PGM1P36871 562 aa13.75□□□□□ -0.21
LDLR-201ENST00000252444 PUS10Q3MIT2 529 aaKnown RBP13.75□□□□□ -0.21
LDLR-201ENST00000252444 DLK2Q6UY11 383 aa13.75□□□□□ -0.21
LDLR-201ENST00000252444 NUDT4Q9NZJ9 180 aa13.75□□□□□ -0.21
LDLR-201ENST00000252444 FAM32AQ9Y421 112 aaKnown RBP13.75□□□□□ -0.21
LDLR-201ENST00000252444 MFHAS1Q9Y4C4 1052 aa13.75□□□□□ -0.21
LDLR-201ENST00000252444 ADH5P11766 374 aa13.74□□□□□ -0.21
LDLR-201ENST00000252444 PABPC1P11940 636 aaKnown RBP13.74□□□□□ -0.21
LDLR-201ENST00000252444 DSG1Q02413 1049 aa13.74□□□□□ -0.21
LDLR-201ENST00000252444 PLCL1Q15111 1095 aa13.74□□□□□ -0.21
LDLR-201ENST00000252444 ZFP28Q8NHY6 868 aa13.74□□□□□ -0.21
LDLR-201ENST00000252444 ASZ1Q8WWH4 475 aa13.74□□□□□ -0.21
LDLR-201ENST00000252444 CNDP1Q96KN2 507 aa13.74□□□□□ -0.21
LDLR-201ENST00000252444 CCDC3Q9BQI4 270 aa13.74□□□□□ -0.21
LDLR-201ENST00000252444 SAR1AQ9NR31 198 aa13.74□□□□□ -0.21
LDLR-201ENST00000252444 TMPRSS4Q9NRS4 437 aa13.74□□□□□ -0.21
LDLR-201ENST00000252444 MAN2B1O00754 1011 aa13.74□□□□□ -0.21
LDLR-201ENST00000252444 TGDSO95455 350 aa13.74□□□□□ -0.21
LDLR-201ENST00000252444 ADH1BP00325 375 aa13.74□□□□□ -0.21
LDLR-201ENST00000252444 EPOP01588 193 aa13.74□□□□□ -0.21
LDLR-201ENST00000252444 PLK1P53350 603 aa13.74□□□□□ -0.21
LDLR-201ENST00000252444 NRG1Q02297 640 aaPredicted RBP13.74□□□□□ -0.21
LDLR-201ENST00000252444 MKRN4PQ13434 485 aaPredicted RBP13.74□□□□□ -0.21
LDLR-201ENST00000252444 RAET1GQ6H3X3 334 aa13.74□□□□□ -0.21
LDLR-201ENST00000252444 NPNTQ6UXI9 565 aa13.74□□□□□ -0.21
LDLR-201ENST00000252444 BPIFB1Q8TDL5 484 aa13.74□□□□□ -0.21
LDLR-201ENST00000252444 PPP3R2Q96LZ3 170 aa13.74□□□□□ -0.21
LDLR-201ENST00000252444 TMEM216Q9P0N5 145 aa13.74□□□□□ -0.21
LDLR-201ENST00000252444 ANKRD31Q8N7Z5 1873 aa13.74□□□□□ -0.21
LDLR-201ENST00000252444 GLYATL1P3A0A0U1RQE8 302 aa13.74□□□□□ -0.21
LDLR-201ENST00000252444 KDELR3O43731 214 aa13.74□□□□□ -0.21
LDLR-201ENST00000252444 BLKP51451 505 aa13.74□□□□□ -0.21
LDLR-201ENST00000252444 C21orf59P57076 290 aa13.74□□□□□ -0.21
LDLR-201ENST00000252444 ATP13A4Q4VNC1 1196 aa13.74□□□□□ -0.21
LDLR-201ENST00000252444 ZNF697Q5TEC3 545 aa13.74□□□□□ -0.21
LDLR-201ENST00000252444 ICE2Q659A1 982 aa13.74□□□□□ -0.21
LDLR-201ENST00000252444 OSTM1Q86WC4 334 aa13.74□□□□□ -0.21
LDLR-201ENST00000252444 ALG3Q92685 438 aa13.74□□□□□ -0.21
LDLR-201ENST00000252444 RAB7BQ96AH8 199 aa13.74□□□□□ -0.21
LDLR-201ENST00000252444 LGALS13Q9UHV8 139 aa13.74□□□□□ -0.21
LDLR-201ENST00000252444 TCEA3O75764 348 aa13.74□□□□□ -0.21
LDLR-201ENST00000252444 SRPRAP08240 638 aaKnown RBP13.74□□□□□ -0.21
LDLR-201ENST00000252444 RASA2Q15283 850 aa13.74□□□□□ -0.21
LDLR-201ENST00000252444 TCEAL8Q8IYN2 117 aa13.74□□□□□ -0.21
LDLR-201ENST00000252444 TACO1Q9BSH4 297 aaKnown RBP13.74□□□□□ -0.21
LDLR-201ENST00000252444 TAGLN3Q9UI15 199 aa13.74□□□□□ -0.21
LDLR-201ENST00000252444 E2F6O75461 281 aa13.73□□□□□ -0.21
LDLR-201ENST00000252444 OTCP00480 354 aa13.73□□□□□ -0.21
LDLR-201ENST00000252444 ESR1P03372 595 aa13.73□□□□□ -0.21
LDLR-201ENST00000252444 OR4Q2P0C623 313 aa13.73□□□□□ -0.21
LDLR-201ENST00000252444 NDUFS1P28331 727 aa13.73□□□□□ -0.21
LDLR-201ENST00000252444 IRAK1P51617 712 aa13.73□□□□□ -0.21
LDLR-201ENST00000252444 LBX1P52954 281 aa13.73□□□□□ -0.21
LDLR-201ENST00000252444 CLNS1AP54105 237 aaKnown RBP13.73□□□□□ -0.21
LDLR-201ENST00000252444 MLLT6P55198 1093 aaPredicted RBP13.73□□□□□ -0.21
LDLR-201ENST00000252444 FAIM2Q9BWQ8 316 aa13.73□□□□□ -0.21
LDLR-201ENST00000252444 MGAT4DA6NG13 374 aa13.73□□□□□ -0.21
LDLR-201ENST00000252444 YJEFN3A6XGL0 299 aa13.73□□□□□ -0.21
LDLR-201ENST00000252444 E7ENQ6 273 aa13.73□□□□□ -0.21
LDLR-201ENST00000252444 MAP2K7O14733 419 aa13.73□□□□□ -0.21
LDLR-201ENST00000252444 PRMT5O14744 637 aaPredicted RBP13.73□□□□□ -0.21
LDLR-201ENST00000252444 SOCS5O75159 536 aa13.73□□□□□ -0.21
LDLR-201ENST00000252444 HOXA11P31270 313 aaPredicted RBP13.73□□□□□ -0.21
LDLR-201ENST00000252444 PTGER3P43115 390 aa13.73□□□□□ -0.21
LDLR-201ENST00000252444 SLC1A6P48664 564 aa13.73□□□□□ -0.21
LDLR-201ENST00000252444 GTF2A1P52655 376 aaPredicted RBP13.73□□□□□ -0.21
LDLR-201ENST00000252444 ATXN3P54252 364 aaPredicted RBP13.73□□□□□ -0.21
LDLR-201ENST00000252444 GALNT2Q10471 571 aa13.73□□□□□ -0.21
LDLR-201ENST00000252444 GNA13Q14344 377 aa13.73□□□□□ -0.21
LDLR-201ENST00000252444 CRYMQ14894 314 aa13.73□□□□□ -0.21
LDLR-201ENST00000252444 TTC7BQ86TV6 843 aa13.73□□□□□ -0.21
LDLR-201ENST00000252444 BHMTQ93088 406 aa13.73□□□□□ -0.21
LDLR-201ENST00000252444 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.73□□□□□ -0.21
LDLR-201ENST00000252444 FBXO5Q9UKT4 447 aa13.73□□□□□ -0.21
LDLR-201ENST00000252444 FAM47E-STBD1D6RA91 191 aa13.73□□□□□ -0.21
LDLR-201ENST00000252444 LILRB3O75022 631 aa13.73□□□□□ -0.21
LDLR-201ENST00000252444 DNAJC8O75937 253 aaPredicted RBP13.73□□□□□ -0.21
LDLR-201ENST00000252444 PAPSS2O95340 614 aaPredicted RBP13.73□□□□□ -0.21
LDLR-201ENST00000252444 AKT2P31751 481 aa13.73□□□□□ -0.21
LDLR-201ENST00000252444 ZBTB17Q13105 803 aa13.73□□□□□ -0.21
LDLR-201ENST00000252444 MARK2Q7KZI7 788 aaKnown RBP13.73□□□□□ -0.21
LDLR-201ENST00000252444 CHPFQ8IZ52 775 aa13.73□□□□□ -0.21
LDLR-201ENST00000252444 CEP70Q8NHQ1 597 aa13.73□□□□□ -0.21
LDLR-201ENST00000252444 SH3RF2Q8TEC5 729 aa13.73□□□□□ -0.21
LDLR-201ENST00000252444 ARNTL2Q8WYA1 636 aa13.73□□□□□ -0.21
LDLR-201ENST00000252444 ELMO1Q92556 727 aa13.73□□□□□ -0.21
LDLR-201ENST00000252444 TUBGCP3Q96CW5 907 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 693.8 ms