RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 ATP12AP54707 1039 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 FADDQ13158 208 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 CLPPQ16740 277 aaPredicted RBP4.7□□□□□ -1.66
SCN1A-220ENST00000641603 HACD4Q5VWC8 232 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 ERMP1Q7Z2K6 904 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 KRT77Q7Z794 578 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 LRRC47Q8N1G4 583 aaKnown RBP4.7□□□□□ -1.66
SCN1A-220ENST00000641603 SKA2Q8WVK7 121 aaPredicted RBP4.7□□□□□ -1.66
SCN1A-220ENST00000641603 C12orf43Q96C57 262 aaKnown RBP4.7□□□□□ -1.66
SCN1A-220ENST00000641603 PHOX2BQ99453 314 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 RNF112Q9ULX5 631 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 CLEC11AQ9Y240 323 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 LOC102724428A0A0B4J2F2 783 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 TNFRSF10AO00220 468 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 GSTT2P0CG29 244 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 HTR7P34969 479 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 SIK1P57059 783 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 CACNB1Q02641 598 aaPredicted RBP4.7□□□□□ -1.66
SCN1A-220ENST00000641603 ABRQ12979 859 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 LMBRD2Q68DH5 695 aaPredicted RBP4.7□□□□□ -1.66
SCN1A-220ENST00000641603 FAM228AQ86W67 206 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 NKAPQ8N5F7 415 aaKnown RBP4.7□□□□□ -1.66
SCN1A-220ENST00000641603 BPIFB6Q8NFQ5 453 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 NT5C1AQ9BXI3 368 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 UNKLQ9H9P5 680 aaKnown RBP4.7□□□□□ -1.66
SCN1A-220ENST00000641603 FRMPD2Q68DX3 1309 aaPredicted RBP4.7□□□□□ -1.66
SCN1A-220ENST00000641603 KRBOX1C9JBD0 128 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 PRKYO43930 277 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 SLITRK5O94991 958 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 SOX30O94993 753 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 PRAMEF1O95521 474 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 CTBP2P56545 445 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 RHDQ02161 417 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 TDGQ13569 410 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 DPYSL3Q14195 570 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 STXBP2Q15833 593 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 ZBTB6Q15916 424 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 FAM71AQ8IYT1 594 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 ANGPTL6Q8NI99 470 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 PRICKLE1Q96MT3 831 aaPredicted RBP4.7□□□□□ -1.66
SCN1A-220ENST00000641603 XPNPEP3Q9NQH7 507 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 RAB19A4D1S5 217 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 TRAPPC13A5PLN9 417 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 FAM86C2PA6NEL3 165 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 AP3D1O14617 1153 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 RASGRP1O95267 797 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 PPP5CP53041 499 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 SWI5Q1ZZU3 235 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 RC3H1Q5TC82 1133 aaKnown RBP4.7□□□□□ -1.66
SCN1A-220ENST00000641603 CLYBLQ8N0X4 340 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 PARP8Q8N3A8 854 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 CBR4Q8N4T8 237 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 SLC4A11Q8NBS3 891 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 ISCA1Q9BUE6 129 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 TM9SF3Q9HD45 589 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 PCDHB16Q9NRJ7 776 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 LOC100506127A0A0U1RQW1 187 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 PRR5-ARHGAP8B1AHC4 643 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 SLC16A4O15374 487 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 CHP2O43745 196 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 AP1G1O43747 822 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 RFPL2O75678 378 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 PGK1P00558 417 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 PAICSP22234 425 aaKnown RBP4.7□□□□□ -1.66
SCN1A-220ENST00000641603 GLRA2P23416 452 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 NDST1P52848 882 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 ARHGAP8P85298 464 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 KLHL22Q53GT1 634 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 HGSNATQ68CP4 663 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 SEPT12Q8IYM1 358 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 RCN3Q96D15 328 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 ART5Q96L15 291 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 MAT2BQ9NZL9 334 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 MALT1Q9UDY8 824 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 LIMD1Q9UGP4 676 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 A0A0A0MRY4 1105 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 EME2A4GXA9 379 aaPredicted RBP4.7□□□□□ -1.66
SCN1A-220ENST00000641603 PTGES3LE9PB15 166 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 H0YGN5 161 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 PGRMC2O15173 223 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 GABBR2O75899 941 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 METTL18O95568 372 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 TOP3BO95985 862 aaKnown RBP4.7□□□□□ -1.66
SCN1A-220ENST00000641603 STOMP27105 288 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 TCF7P36402 384 aaPredicted RBP4.7□□□□□ -1.66
SCN1A-220ENST00000641603 RAB4BP61018 213 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 MOGSQ13724 837 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 SMCO1Q147U7 214 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 COQ5Q5HYK3 327 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 BHLHB9Q6PI77 547 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 CDK20Q8IZL9 346 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 LINC00471Q8N535 108 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 ANKRD53Q8N9V6 530 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 OR4A15Q8NGL6 344 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 TBC1D15Q8TC07 691 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 RFKQ969G6 155 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 ZNF486Q96H40 463 aaPredicted RBP4.7□□□□□ -1.66
SCN1A-220ENST00000641603 SPATA13Q96N96 652 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 DOLKQ9UPQ8 538 aa4.7□□□□□ -1.66
SCN1A-220ENST00000641603 PCDHA10Q9Y5I2 948 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms