RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 GFRA3O60609 400 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 SEMA4FO95754 770 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 HBQ1P09105 142 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 SFTPCP11686 197 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 TGFBR2P37173 567 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 NRG3P56975 720 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 RPS21P63220 83 aaKnown RBP5.06□□□□□ -1.6
SCN1A-218ENST00000640036 EXOSC10Q01780 885 aaKnown RBP5.06□□□□□ -1.6
SCN1A-218ENST00000640036 CACHD1Q5VU97 1274 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 RBM43Q6ZSC3 357 aaKnown RBP5.06□□□□□ -1.6
SCN1A-218ENST00000640036 DET1Q7L5Y6 550 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 PIGZQ86VD9 579 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 COMMD2Q86X83 199 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 TRIML2Q8N7C3 387 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 DLG3Q92796 817 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 PRRG3Q9BZD7 231 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 LRRC40Q9H9A6 602 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 EIF4ENIF1Q9NRA8 985 aaKnown RBP5.06□□□□□ -1.6
SCN1A-218ENST00000640036 SPTLC3Q9NUV7 552 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 B4GALT7Q9UBV7 327 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 OGDHLQ9ULD0 1010 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 SHOC2Q9UQ13 582 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 DDX52Q9Y2R4 599 aaKnown RBP eCLIP5.06□□□□□ -1.6
SCN1A-218ENST00000640036 HEATR1Q9H583 2144 aaKnown RBP5.06□□□□□ -1.6
SCN1A-218ENST00000640036 A0A1W2PQH9 124 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 MEFVO15553 781 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-218ENST00000640036 GPR37L1O60883 481 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 DGKIO75912 1065 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 CCNB2O95067 398 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 TYRP14679 529 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 JUNDP17535 347 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 ZNF268Q14587 947 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-218ENST00000640036 EFTUD2Q15029 972 aaKnown RBP eCLIP5.06□□□□□ -1.6
SCN1A-218ENST00000640036 BHLHB9Q6PI77 547 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 KRT77Q7Z794 578 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 BRSK1Q8TDC3 778 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 ASZ1Q8WWH4 475 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 CASKIN2Q8WXE0 1202 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 CRELD1Q96HD1 420 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 MAGED4Q96JG8 741 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 BTBD9Q96Q07 612 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 VAT1Q99536 393 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 EBNA1BP2Q99848 306 aaKnown RBP5.06□□□□□ -1.6
SCN1A-218ENST00000640036 ZNF717Q9BY31 904 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-218ENST00000640036 DPY30Q9C005 99 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 IL17RBQ9NRM6 502 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 DYNC1LI1Q9Y6G9 523 aaKnown RBP5.06□□□□□ -1.6
SCN1A-218ENST00000640036 TAF6LQ9Y6J9 622 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 STON1Q9Y6Q2 735 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 CHUKO15111 745 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 TNFSF9P41273 254 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 NR2C2P49116 596 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 DR1Q01658 176 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 SLC6A3Q01959 620 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 TSGA10IPQ3SY00 556 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 KDM7AQ6ZMT4 941 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 CHST15Q7LFX5 561 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-218ENST00000640036 RASSF5Q8WWW0 418 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 SUSD3Q96L08 255 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 HHIPQ96QV1 700 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 COPS8Q99627 209 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 CCT7Q99832 543 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 DUSP16Q9BY84 665 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 ING2Q9H160 280 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 CYP4F12Q9HCS2 524 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 ZNF638Q14966 1978 aaKnown RBP5.06□□□□□ -1.6
SCN1A-218ENST00000640036 A0A0J9YVX5 310 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 GOLGA8KD6RF30 607 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 SMAPO00193 183 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 MUSKO15146 869 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 TRAPPC6AO75865 159 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 FYNP06241 537 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 ASGR2P07307 311 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 DGKAP23743 735 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 KCNJ2P63252 427 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 PPIDQ08752 370 aaKnown RBP5.06□□□□□ -1.6
SCN1A-218ENST00000640036 DUOXA1Q1HG43 343 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 FAM214AQ32MH5 1076 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 VWA2Q5GFL6 755 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 ACAD10Q6JQN1 1059 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 UTS2BQ765I0 119 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 RTL3Q8N8U3 475 aaKnown RBP5.06□□□□□ -1.6
SCN1A-218ENST00000640036 VN1R2Q8NFZ6 395 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 MOSPD2Q8NHP6 518 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 FRS2Q8WU20 508 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 FICDQ9BVA6 458 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 CAPS2Q9BXY5 557 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 GID8Q9NWU2 228 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 IL36AQ9UHA7 158 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 PLAGL2Q9UPG8 496 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 EIF3LQ9Y262 564 aaKnown RBP5.06□□□□□ -1.6
SCN1A-218ENST00000640036 NCANO14594 1321 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 E2F8A0AVK6 867 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 KAT7O95251 611 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 SLC35G6P0C7Q6 338 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 ABOP16442 354 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 CCKBRP32239 447 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 RAB28P51157 221 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 SLC5A3P53794 718 aa5.06□□□□□ -1.6
SCN1A-218ENST00000640036 YBEYP58557 167 aaPredicted RBP5.06□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms