RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 THAP4Q8WY91 577 aa4.27□□□□□ -1.73
CD44-239ENST00000639002 RNF183Q96D59 192 aa4.27□□□□□ -1.73
CD44-239ENST00000639002 NPLQ9BXD5 320 aaPredicted RBP4.27□□□□□ -1.73
CD44-239ENST00000639002 ANKRD10Q9NXR5 420 aa4.27□□□□□ -1.73
CD44-239ENST00000639002 DERAQ9Y315 318 aa4.27□□□□□ -1.73
CD44-239ENST00000639002 ADAM18Q9Y3Q7 739 aa4.27□□□□□ -1.73
CD44-239ENST00000639002 TAF1P21675 1872 aa4.26□□□□□ -1.73
CD44-239ENST00000639002 PRR23AA6NEV1 266 aa4.26□□□□□ -1.73
CD44-239ENST00000639002 HSPA12AO43301 675 aa4.26□□□□□ -1.73
CD44-239ENST00000639002 PMS2P2O95744 297 aa4.26□□□□□ -1.73
CD44-239ENST00000639002 TK1P04183 234 aa4.26□□□□□ -1.73
CD44-239ENST00000639002 LIFRP42702 1097 aa4.26□□□□□ -1.73
CD44-239ENST00000639002 AARSP49588 968 aaKnown RBP eCLIP4.26□□□□□ -1.73
CD44-239ENST00000639002 CHAF1AQ13111 956 aaPredicted RBP4.26□□□□□ -1.73
CD44-239ENST00000639002 OTUD3Q5T2D3 398 aaPredicted RBP4.26□□□□□ -1.73
CD44-239ENST00000639002 DENND1BQ6P3S1 775 aa4.26□□□□□ -1.73
CD44-239ENST00000639002 C9orf139Q6ZV77 190 aa4.26□□□□□ -1.73
CD44-239ENST00000639002 MOGAT3Q86VF5 341 aa4.26□□□□□ -1.73
CD44-239ENST00000639002 GHDCQ8N2G8 530 aa4.26□□□□□ -1.73
CD44-239ENST00000639002 ANKRD44Q8N8A2 993 aa4.26□□□□□ -1.73
CD44-239ENST00000639002 HSPH1Q92598 858 aa4.26□□□□□ -1.73
CD44-239ENST00000639002 LRFN5Q96NI6 719 aa4.26□□□□□ -1.73
CD44-239ENST00000639002 TTC12Q9H892 705 aaPredicted RBP4.26□□□□□ -1.73
CD44-239ENST00000639002 SPATS2LQ9NUQ6 558 aaKnown RBP4.26□□□□□ -1.73
CD44-239ENST00000639002 CNPY2Q9Y2B0 182 aa4.26□□□□□ -1.73
CD44-239ENST00000639002 GREB1LQ9C091 1923 aaPredicted RBP4.25□□□□□ -1.73
CD44-239ENST00000639002 XPNPEP2O43895 674 aa4.25□□□□□ -1.73
CD44-239ENST00000639002 TNNT1P13805 278 aa4.25□□□□□ -1.73
CD44-239ENST00000639002 SRD5A1P18405 259 aa4.25□□□□□ -1.73
CD44-239ENST00000639002 RYKP34925 604 aa4.25□□□□□ -1.73
CD44-239ENST00000639002 PIGAP37287 484 aa4.25□□□□□ -1.73
CD44-239ENST00000639002 PEX5P50542 639 aa4.25□□□□□ -1.73
CD44-239ENST00000639002 KRTAP10-5P60370 271 aa4.25□□□□□ -1.73
CD44-239ENST00000639002 MORC3Q14149 939 aa4.25□□□□□ -1.73
CD44-239ENST00000639002 ZNF449Q6P9G9 518 aa4.25□□□□□ -1.73
CD44-239ENST00000639002 DSTYKQ6XUX3 929 aa4.25□□□□□ -1.73
CD44-239ENST00000639002 PRSS45Q7RTY3 260 aa4.25□□□□□ -1.73
CD44-239ENST00000639002 SUGP1Q8IWZ8 645 aaKnown RBP4.25□□□□□ -1.73
CD44-239ENST00000639002 CCDC105Q8IYK2 499 aa4.25□□□□□ -1.73
CD44-239ENST00000639002 AFG1LQ8WV93 481 aa4.25□□□□□ -1.73
CD44-239ENST00000639002 RUBCNQ92622 972 aa4.25□□□□□ -1.73
CD44-239ENST00000639002 HES6Q96HZ4 224 aa4.25□□□□□ -1.73
CD44-239ENST00000639002 LMAN2LQ9H0V9 348 aa4.25□□□□□ -1.73
CD44-239ENST00000639002 SLC9A2Q9UBY0 812 aa4.25□□□□□ -1.73
CD44-239ENST00000639002 NDRG3Q9UGV2 375 aa4.25□□□□□ -1.73
CD44-239ENST00000639002 DNAJC16Q9Y2G8 782 aa4.25□□□□□ -1.73
CD44-239ENST00000639002 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP4.24□□□□□ -1.73
CD44-239ENST00000639002 CBY3A6NI87 242 aa4.24□□□□□ -1.73
CD44-239ENST00000639002 CLGNO14967 610 aa4.24□□□□□ -1.73
CD44-239ENST00000639002 LMX1BO60663 402 aa4.24□□□□□ -1.73
CD44-239ENST00000639002 KDM4BO94953 1096 aa4.24□□□□□ -1.73
CD44-239ENST00000639002 CLDN14O95500 239 aa4.24□□□□□ -1.73
CD44-239ENST00000639002 ITGAXP20702 1163 aa4.24□□□□□ -1.73
CD44-239ENST00000639002 CHKAP35790 457 aa4.24□□□□□ -1.73
CD44-239ENST00000639002 ACTR2P61160 394 aa4.24□□□□□ -1.73
CD44-239ENST00000639002 ACSM2AQ08AH3 577 aa4.24□□□□□ -1.73
CD44-239ENST00000639002 RBM39Q14498 530 aaKnown RBP4.24□□□□□ -1.73
CD44-239ENST00000639002 MRGPRG-AS1Q2M3A8 158 aa4.24□□□□□ -1.73
CD44-239ENST00000639002 CTXN3Q4LDR2 81 aa4.24□□□□□ -1.73
CD44-239ENST00000639002 KLHL24Q6TFL4 600 aa4.24□□□□□ -1.73
CD44-239ENST00000639002 TUBA1AQ71U36 451 aa4.24□□□□□ -1.73
CD44-239ENST00000639002 SFTPA2Q8IWL1 248 aa4.24□□□□□ -1.73
CD44-239ENST00000639002 ZNF441Q8N8Z8 693 aa4.24□□□□□ -1.73
CD44-239ENST00000639002 DNAAF1Q8NEP3 725 aa4.24□□□□□ -1.73
CD44-239ENST00000639002 NEK9Q8TD19 979 aa4.24□□□□□ -1.73
CD44-239ENST00000639002 ZNF385AQ96PM9 386 aaKnown RBP4.24□□□□□ -1.73
CD44-239ENST00000639002 CSF3RQ99062 836 aa4.24□□□□□ -1.73
CD44-239ENST00000639002 TUBA1CQ9BQE3 449 aa4.24□□□□□ -1.73
CD44-239ENST00000639002 EVA1AQ9H8M9 152 aa4.24□□□□□ -1.73
CD44-239ENST00000639002 UBTD1Q9HAC8 227 aa4.24□□□□□ -1.73
CD44-239ENST00000639002 ENTPD7Q9NQZ7 604 aa4.24□□□□□ -1.73
CD44-239ENST00000639002 KIF17Q9P2E2 1029 aa4.24□□□□□ -1.73
CD44-239ENST00000639002 FEM1BQ9UK73 627 aa4.24□□□□□ -1.73
CD44-239ENST00000639002 RIPOR2Q9Y4F9 1068 aa4.24□□□□□ -1.73
CD44-239ENST00000639002 hDV102S1A0JD36 115 aa4.23□□□□□ -1.73
CD44-239ENST00000639002 FAM90A7PA6NKC0 464 aa4.23□□□□□ -1.73
CD44-239ENST00000639002 FAM90A22PA8MWA6 464 aa4.23□□□□□ -1.73
CD44-239ENST00000639002 FAM90A12PA8MX19 464 aa4.23□□□□□ -1.73
CD44-239ENST00000639002 FAM90A23PA8MXZ1 464 aa4.23□□□□□ -1.73
CD44-239ENST00000639002 EBAG9O00559 213 aa4.23□□□□□ -1.73
CD44-239ENST00000639002 WNT9BO14905 357 aa4.23□□□□□ -1.73
CD44-239ENST00000639002 RGS11O94810 467 aa4.23□□□□□ -1.73
CD44-239ENST00000639002 CHRM4P08173 479 aa4.23□□□□□ -1.73
CD44-239ENST00000639002 DHRS4L1P0CG22 281 aa4.23□□□□□ -1.73
CD44-239ENST00000639002 EFNB3Q15768 340 aa4.23□□□□□ -1.73
CD44-239ENST00000639002 SOWAHAQ2M3V2 549 aa4.23□□□□□ -1.73
CD44-239ENST00000639002 LCE1FQ5T754 118 aa4.23□□□□□ -1.73
CD44-239ENST00000639002 SHFQ7M4L6 423 aa4.23□□□□□ -1.73
CD44-239ENST00000639002 SATL1Q86VE3 508 aa4.23□□□□□ -1.73
CD44-239ENST00000639002 EXOC3L1Q86VI1 746 aa4.23□□□□□ -1.73
CD44-239ENST00000639002 CHD1LQ86WJ1 897 aa4.23□□□□□ -1.73
CD44-239ENST00000639002 HERC6Q8IVU3 1022 aa4.23□□□□□ -1.73
CD44-239ENST00000639002 MYCT1Q8N699 235 aa4.23□□□□□ -1.73
CD44-239ENST00000639002 SPATA22Q8NHS9 363 aa4.23□□□□□ -1.73
CD44-239ENST00000639002 GDPD5Q8WTR4 605 aa4.23□□□□□ -1.73
CD44-239ENST00000639002 TRAPPC12Q8WVT3 735 aa4.23□□□□□ -1.73
CD44-239ENST00000639002 PGLYRP2Q96PD5 576 aa4.23□□□□□ -1.73
CD44-239ENST00000639002 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP4.23□□□□□ -1.73
CD44-239ENST00000639002 EBF2Q9HAK2 575 aa4.23□□□□□ -1.73
CD44-239ENST00000639002 NOX4Q9NPH5 578 aa4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms