RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 ACOT8O14734 319 aa12.89□□□□□ -0.35
LINC00540-203ENST00000631321 PABPC4LP0CB38 370 aaKnown RBP12.89□□□□□ -0.35
LINC00540-203ENST00000631321 CPB1P15086 417 aa12.89□□□□□ -0.35
LINC00540-203ENST00000631321 ME2P23368 584 aa12.89□□□□□ -0.35
LINC00540-203ENST00000631321 YY1P25490 414 aa12.89□□□□□ -0.35
LINC00540-203ENST00000631321 CALRP27797 417 aaKnown RBP12.89□□□□□ -0.35
LINC00540-203ENST00000631321 MS4A2Q01362 244 aa12.89□□□□□ -0.35
LINC00540-203ENST00000631321 PFKPQ01813 784 aa12.89□□□□□ -0.35
LINC00540-203ENST00000631321 PSMD5Q16401 504 aa12.89□□□□□ -0.35
LINC00540-203ENST00000631321 TECRLQ5HYJ1 363 aa12.89□□□□□ -0.35
LINC00540-203ENST00000631321 GALNT7Q86SF2 657 aa12.89□□□□□ -0.35
LINC00540-203ENST00000631321 CATSPER1Q8NEC5 780 aa12.89□□□□□ -0.35
LINC00540-203ENST00000631321 OR10T2Q8NGX3 314 aa12.89□□□□□ -0.35
LINC00540-203ENST00000631321 CEP70Q8NHQ1 597 aa12.89□□□□□ -0.35
LINC00540-203ENST00000631321 FATE1Q969F0 183 aa12.89□□□□□ -0.35
LINC00540-203ENST00000631321 RANBP9Q96S59 729 aa12.89□□□□□ -0.35
LINC00540-203ENST00000631321 POMKQ9H5K3 350 aa12.89□□□□□ -0.35
LINC00540-203ENST00000631321 ATP13A1Q9HD20 1204 aa12.89□□□□□ -0.35
LINC00540-203ENST00000631321 NDFIP2Q9NV92 336 aa12.89□□□□□ -0.35
LINC00540-203ENST00000631321 PRSS51A0A1B0GVH4 220 aa12.88□□□□□ -0.35
LINC00540-203ENST00000631321 IQCA1LA6NCM1 817 aa12.88□□□□□ -0.35
LINC00540-203ENST00000631321 GLTPD2A6NH11 291 aa12.88□□□□□ -0.35
LINC00540-203ENST00000631321 CAPN8A6NHC0 703 aa12.88□□□□□ -0.35
LINC00540-203ENST00000631321 KCNU1A8MYU2 1149 aa12.88□□□□□ -0.35
LINC00540-203ENST00000631321 TNFRSF10BO14763 440 aa12.88□□□□□ -0.35
LINC00540-203ENST00000631321 ZNF623O75123 536 aa12.88□□□□□ -0.35
LINC00540-203ENST00000631321 PMPCBO75439 489 aa12.88□□□□□ -0.35
LINC00540-203ENST00000631321 CHRNA1P02708 482 aa12.88□□□□□ -0.35
LINC00540-203ENST00000631321 SULT2A1Q06520 285 aa12.88□□□□□ -0.35
LINC00540-203ENST00000631321 ART3Q13508 389 aa12.88□□□□□ -0.35
LINC00540-203ENST00000631321 MAPRE1Q15691 268 aaKnown RBP12.88□□□□□ -0.35
LINC00540-203ENST00000631321 CNPY1Q3B7I2 92 aa12.88□□□□□ -0.35
LINC00540-203ENST00000631321 RARS2Q5T160 578 aaKnown RBP12.88□□□□□ -0.35
LINC00540-203ENST00000631321 BTBD8Q5XKL5 378 aa12.88□□□□□ -0.35
LINC00540-203ENST00000631321 CNSTQ6PJW8 725 aa12.88□□□□□ -0.35
LINC00540-203ENST00000631321 SPATA6LQ8N4H0 392 aa12.88□□□□□ -0.35
LINC00540-203ENST00000631321 ADCY4Q8NFM4 1077 aa12.88□□□□□ -0.35
LINC00540-203ENST00000631321 CCDC126Q96EE4 140 aa12.88□□□□□ -0.35
LINC00540-203ENST00000631321 FSD1LQ9BXM9 530 aa12.88□□□□□ -0.35
LINC00540-203ENST00000631321 EPB41L1Q9H4G0 881 aa12.88□□□□□ -0.35
LINC00540-203ENST00000631321 SLC4A7Q9Y6M7 1214 aa12.88□□□□□ -0.35
LINC00540-203ENST00000631321 SHROOM3Q8TF72 1996 aa12.88□□□□□ -0.35
LINC00540-203ENST00000631321 TMEM233B4DJY2 109 aa12.88□□□□□ -0.35
LINC00540-203ENST00000631321 KPNA6O60684 536 aa12.88□□□□□ -0.35
LINC00540-203ENST00000631321 PEX11BO96011 259 aa12.88□□□□□ -0.35
LINC00540-203ENST00000631321 CHRNA4P43681 627 aa12.88□□□□□ -0.35
LINC00540-203ENST00000631321 LEPRP48357 1165 aaKnown RBP12.88□□□□□ -0.35
LINC00540-203ENST00000631321 CLCN5P51795 746 aa12.88□□□□□ -0.35
LINC00540-203ENST00000631321 WNT3AP56704 352 aa12.88□□□□□ -0.35
LINC00540-203ENST00000631321 MRPS22P82650 360 aaKnown RBP12.88□□□□□ -0.35
LINC00540-203ENST00000631321 MGAT3Q09327 533 aa12.88□□□□□ -0.35
LINC00540-203ENST00000631321 GALNT1Q10472 559 aaPredicted RBP12.88□□□□□ -0.35
LINC00540-203ENST00000631321 TLR1Q15399 786 aa12.88□□□□□ -0.35
LINC00540-203ENST00000631321 FAM83EQ2M2I3 478 aa12.88□□□□□ -0.35
LINC00540-203ENST00000631321 SCD5Q86SK9 330 aa12.88□□□□□ -0.35
LINC00540-203ENST00000631321 CALML6Q8TD86 181 aa12.88□□□□□ -0.35
LINC00540-203ENST00000631321 CASP10Q92851 521 aa12.88□□□□□ -0.35
LINC00540-203ENST00000631321 TMEM209Q96SK2 561 aa12.88□□□□□ -0.35
LINC00540-203ENST00000631321 SLC25A51Q9H1U9 297 aa12.88□□□□□ -0.35
LINC00540-203ENST00000631321 MEAF6Q9HAF1 191 aa12.88□□□□□ -0.35
LINC00540-203ENST00000631321 RAB26Q9ULW5 256 aa12.88□□□□□ -0.35
LINC00540-203ENST00000631321 C15orf38-AP3S2A0A0A6YYH1 394 aa12.87□□□□□ -0.35
LINC00540-203ENST00000631321 HEATR9A2RTY3 570 aa12.87□□□□□ -0.35
LINC00540-203ENST00000631321 E9PAM4 449 aa12.87□□□□□ -0.35
LINC00540-203ENST00000631321 DNAJA2O60884 412 aa12.87□□□□□ -0.35
LINC00540-203ENST00000631321 B3GAT3O94766 335 aa12.87□□□□□ -0.35
LINC00540-203ENST00000631321 PAPSS2O95340 614 aaPredicted RBP12.87□□□□□ -0.35
LINC00540-203ENST00000631321 ENO3P13929 434 aaPredicted RBP12.87□□□□□ -0.35
LINC00540-203ENST00000631321 GRIA2P42262 883 aa12.87□□□□□ -0.35
LINC00540-203ENST00000631321 BRCC3P46736 316 aa12.87□□□□□ -0.35
LINC00540-203ENST00000631321 SLC5A3P53794 718 aa12.87□□□□□ -0.35
LINC00540-203ENST00000631321 SLC12A2P55011 1212 aa12.87□□□□□ -0.35
LINC00540-203ENST00000631321 INHBCP55103 352 aa12.87□□□□□ -0.35
LINC00540-203ENST00000631321 PKNOX1P55347 436 aa12.87□□□□□ -0.35
LINC00540-203ENST00000631321 POLE2P56282 527 aa12.87□□□□□ -0.35
LINC00540-203ENST00000631321 RBM20Q5T481 1227 aaKnown RBP12.87□□□□□ -0.35
LINC00540-203ENST00000631321 AGAP9Q5VTM2 703 aa12.87□□□□□ -0.35
LINC00540-203ENST00000631321 ARPINQ7Z6K5 226 aa12.87□□□□□ -0.35
LINC00540-203ENST00000631321 MARK4Q96L34 752 aa12.87□□□□□ -0.35
LINC00540-203ENST00000631321 LRGUKQ96M69 825 aa12.87□□□□□ -0.35
LINC00540-203ENST00000631321 TRIM4Q9C037 500 aa12.87□□□□□ -0.35
LINC00540-203ENST00000631321 Q9H521 79 aa12.87□□□□□ -0.35
LINC00540-203ENST00000631321 SARDHQ9UL12 918 aa12.87□□□□□ -0.35
LINC00540-203ENST00000631321 TRIM38O00635 465 aa12.87□□□□□ -0.35
LINC00540-203ENST00000631321 AURKAO14965 403 aa12.87□□□□□ -0.35
LINC00540-203ENST00000631321 GPR182O15218 404 aa12.87□□□□□ -0.35
LINC00540-203ENST00000631321 CFLARO15519 480 aa12.87□□□□□ -0.35
LINC00540-203ENST00000631321 MSI1O43347 362 aaKnown RBP12.87□□□□□ -0.35
LINC00540-203ENST00000631321 IPO13O94829 963 aaKnown RBP12.87□□□□□ -0.35
LINC00540-203ENST00000631321 GSTT1P30711 240 aa12.87□□□□□ -0.35
LINC00540-203ENST00000631321 PGFP49763 221 aa12.87□□□□□ -0.35
LINC00540-203ENST00000631321 C14orf80Q86SX3 495 aa12.87□□□□□ -0.35
LINC00540-203ENST00000631321 LILRA2Q8N149 483 aa12.87□□□□□ -0.35
LINC00540-203ENST00000631321 BHLHE22Q8NFJ8 381 aaPredicted RBP12.87□□□□□ -0.35
LINC00540-203ENST00000631321 SPPL2BQ8TCT7 592 aa12.87□□□□□ -0.35
LINC00540-203ENST00000631321 RSPH1Q8WYR4 309 aa12.87□□□□□ -0.35
LINC00540-203ENST00000631321 IMP4Q96G21 291 aaKnown RBP12.87□□□□□ -0.35
LINC00540-203ENST00000631321 UBXN10Q96LJ8 280 aa12.87□□□□□ -0.35
LINC00540-203ENST00000631321 C1orf74Q96LT6 269 aa12.87□□□□□ -0.35
LINC00540-203ENST00000631321 GCNAQ96QF7 691 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms