RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 DSC2Q02487 901 aa19.31■□□□□ 0.68
SQSTM1-216ENST00000626660 RPL6Q02878 288 aaKnown RBP19.31■□□□□ 0.68
SQSTM1-216ENST00000626660 WASHC5Q12768 1159 aa19.31■□□□□ 0.68
SQSTM1-216ENST00000626660 BRAT1Q6PJG6 821 aa19.31■□□□□ 0.68
SQSTM1-216ENST00000626660 LPCAT2Q7L5N7 544 aa19.31■□□□□ 0.68
SQSTM1-216ENST00000626660 CAMK1DQ8IU85 385 aa19.31■□□□□ 0.68
SQSTM1-216ENST00000626660 CNTD1Q8N815 330 aa19.31■□□□□ 0.68
SQSTM1-216ENST00000626660 FRMD1Q8N878 549 aa19.31■□□□□ 0.68
SQSTM1-216ENST00000626660 SLC35B2Q8TB61 432 aa19.31■□□□□ 0.68
SQSTM1-216ENST00000626660 HCAR2Q8TDS4 363 aa19.31■□□□□ 0.68
SQSTM1-216ENST00000626660 ATG4AQ8WYN0 398 aa19.31■□□□□ 0.68
SQSTM1-216ENST00000626660 TEKT5Q96M29 485 aa19.31■□□□□ 0.68
SQSTM1-216ENST00000626660 C10orf88Q9H8K7 445 aa19.31■□□□□ 0.68
SQSTM1-216ENST00000626660 HOMER3Q9NSC5 361 aa19.31■□□□□ 0.68
SQSTM1-216ENST00000626660 MBD1Q9UIS9 605 aaPredicted RBP19.31■□□□□ 0.68
SQSTM1-216ENST00000626660 DNPEPQ9ULA0 475 aa19.31■□□□□ 0.68
SQSTM1-216ENST00000626660 GON4LQ3T8J9 2241 aa19.31■□□□□ 0.68
SQSTM1-216ENST00000626660 A0A1W2PQ67 120 aa19.3■□□□□ 0.68
SQSTM1-216ENST00000626660 LRRC72A6NJI9 287 aa19.3■□□□□ 0.68
SQSTM1-216ENST00000626660 LIASO43766 372 aa19.3■□□□□ 0.68
SQSTM1-216ENST00000626660 GJB3O75712 270 aa19.3■□□□□ 0.68
SQSTM1-216ENST00000626660 RHOBTB1O94844 696 aa19.3■□□□□ 0.68
SQSTM1-216ENST00000626660 SEMA4FO95754 770 aa19.3■□□□□ 0.68
SQSTM1-216ENST00000626660 BCKDHBP21953 392 aa19.3■□□□□ 0.68
SQSTM1-216ENST00000626660 CASQ1P31415 396 aa19.3■□□□□ 0.68
SQSTM1-216ENST00000626660 ACSL1P33121 698 aa19.3■□□□□ 0.68
SQSTM1-216ENST00000626660 AGBL4Q5VU57 503 aa19.3■□□□□ 0.68
SQSTM1-216ENST00000626660 PAPD7Q5XG87 772 aaKnown RBP19.3■□□□□ 0.68
SQSTM1-216ENST00000626660 ITPRIPL1Q6GPH6 555 aa19.3■□□□□ 0.68
SQSTM1-216ENST00000626660 PARS2Q7L3T8 475 aaKnown RBP19.3■□□□□ 0.68
SQSTM1-216ENST00000626660 PID1Q7Z2X4 250 aa19.3■□□□□ 0.68
SQSTM1-216ENST00000626660 OR14C36Q8NHC7 312 aa19.3■□□□□ 0.68
SQSTM1-216ENST00000626660 COG1Q8WTW3 980 aa19.3■□□□□ 0.68
SQSTM1-216ENST00000626660 C1orf54Q8WWF1 131 aa19.3■□□□□ 0.68
SQSTM1-216ENST00000626660 RAB7BQ96AH8 199 aa19.3■□□□□ 0.68
SQSTM1-216ENST00000626660 GPR174Q9BXC1 333 aa19.3■□□□□ 0.68
SQSTM1-216ENST00000626660 PCED1AQ9H1Q7 454 aa19.3■□□□□ 0.68
SQSTM1-216ENST00000626660 SLC25A51Q9H1U9 297 aa19.3■□□□□ 0.68
SQSTM1-216ENST00000626660 EPC1Q9H2F5 836 aa19.3■□□□□ 0.68
SQSTM1-216ENST00000626660 SEMA4AQ9H3S1 761 aa19.3■□□□□ 0.68
SQSTM1-216ENST00000626660 GLOD4Q9HC38 313 aa19.3■□□□□ 0.68
SQSTM1-216ENST00000626660 TTC7AQ9ULT0 858 aaPredicted RBP19.3■□□□□ 0.68
SQSTM1-216ENST00000626660 ADRB3P13945 408 aa19.29■□□□□ 0.68
SQSTM1-216ENST00000626660 PRLRP16471 622 aa19.29■□□□□ 0.68
SQSTM1-216ENST00000626660 NBL1P41271 181 aa19.29■□□□□ 0.68
SQSTM1-216ENST00000626660 SUOXP51687 545 aa19.29■□□□□ 0.68
SQSTM1-216ENST00000626660 POLR2LP62875 67 aaKnown RBP19.29■□□□□ 0.68
SQSTM1-216ENST00000626660 NIPAL4Q0D2K0 466 aa19.29■□□□□ 0.68
SQSTM1-216ENST00000626660 CCNG2Q16589 344 aa19.29■□□□□ 0.68
SQSTM1-216ENST00000626660 PIP5KL1Q5T9C9 394 aa19.29■□□□□ 0.68
SQSTM1-216ENST00000626660 ZNF567Q8N184 647 aa19.29■□□□□ 0.68
SQSTM1-216ENST00000626660 OR2T34Q8NGX1 318 aa19.29■□□□□ 0.68
SQSTM1-216ENST00000626660 ARRDC2Q8TBH0 407 aa19.29■□□□□ 0.68
SQSTM1-216ENST00000626660 ACTRT1Q8TDG2 376 aa19.29■□□□□ 0.68
SQSTM1-216ENST00000626660 PDCD6IPQ8WUM4 868 aaKnown RBP19.29■□□□□ 0.68
SQSTM1-216ENST00000626660 NKD2Q969F2 451 aaPredicted RBP19.29■□□□□ 0.68
SQSTM1-216ENST00000626660 FAM131CQ96AQ9 280 aa19.29■□□□□ 0.68
SQSTM1-216ENST00000626660 VOPP1Q96AW1 172 aa19.29■□□□□ 0.68
SQSTM1-216ENST00000626660 MS4A14Q96JA4 679 aa19.29■□□□□ 0.68
SQSTM1-216ENST00000626660 KDM4CQ9H3R0 1056 aa19.29■□□□□ 0.68
SQSTM1-216ENST00000626660 ZNF148Q9UQR1 794 aa19.29■□□□□ 0.68
SQSTM1-216ENST00000626660 PCDHGC4Q9Y5F7 938 aa19.29■□□□□ 0.68
SQSTM1-216ENST00000626660 SAR1BQ9Y6B6 198 aa19.29■□□□□ 0.68
SQSTM1-216ENST00000626660 TSPAN11A1L157 253 aa19.28■□□□□ 0.68
SQSTM1-216ENST00000626660 FAM47DPA6NHR8 397 aa19.28■□□□□ 0.68
SQSTM1-216ENST00000626660 PLRG1O43660 514 aaKnown RBP19.28■□□□□ 0.68
SQSTM1-216ENST00000626660 CD86P42081 329 aa19.28■□□□□ 0.68
SQSTM1-216ENST00000626660 ADPRHP54922 357 aa19.28■□□□□ 0.68
SQSTM1-216ENST00000626660 SNX1Q13596 522 aa19.28■□□□□ 0.68
SQSTM1-216ENST00000626660 SIX1Q15475 284 aaPredicted RBP19.28■□□□□ 0.68
SQSTM1-216ENST00000626660 PLK5Q496M5 336 aa19.28■□□□□ 0.68
SQSTM1-216ENST00000626660 SPDYCQ5MJ68 293 aa19.28■□□□□ 0.68
SQSTM1-216ENST00000626660 TTC7BQ86TV6 843 aa19.28■□□□□ 0.68
SQSTM1-216ENST00000626660 FAM71DQ8N9W8 422 aa19.28■□□□□ 0.68
SQSTM1-216ENST00000626660 CADM4Q8NFZ8 388 aa19.28■□□□□ 0.68
SQSTM1-216ENST00000626660 FOXJ1Q92949 421 aa19.28■□□□□ 0.68
SQSTM1-216ENST00000626660 IMP4Q96G21 291 aaKnown RBP19.28■□□□□ 0.68
SQSTM1-216ENST00000626660 ZC3H10Q96K80 434 aaKnown RBP19.28■□□□□ 0.68
SQSTM1-216ENST00000626660 TMEM121Q9BTD3 319 aa19.28■□□□□ 0.68
SQSTM1-216ENST00000626660 DUSP15Q9H1R2 295 aaPredicted RBP19.28■□□□□ 0.68
SQSTM1-216ENST00000626660 USP29Q9HBJ7 922 aa19.28■□□□□ 0.68
SQSTM1-216ENST00000626660 EIF2AK3Q9NZJ5 1116 aaKnown RBP19.28■□□□□ 0.68
SQSTM1-216ENST00000626660 RSPH14Q9UHP6 348 aa19.28■□□□□ 0.68
SQSTM1-216ENST00000626660 SMG5Q9UPR3 1016 aaKnown RBP19.28■□□□□ 0.68
SQSTM1-216ENST00000626660 RAI2Q9Y5P3 530 aa19.28■□□□□ 0.68
SQSTM1-216ENST00000626660 TBC1D3DA0A087WVF3 549 aa19.27■□□□□ 0.68
SQSTM1-216ENST00000626660 TBC1D3IA0A087WXS9 549 aa19.27■□□□□ 0.68
SQSTM1-216ENST00000626660 TBC1D3EA0A087X179 549 aa19.27■□□□□ 0.68
SQSTM1-216ENST00000626660 TBC1D3KA0A087X1G2 549 aa19.27■□□□□ 0.68
SQSTM1-216ENST00000626660 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa19.27■□□□□ 0.68
SQSTM1-216ENST00000626660 GOLGA6L10A0A0M3HER8 536 aa19.27■□□□□ 0.68
SQSTM1-216ENST00000626660 TBC1D3FA6NER0 549 aaPredicted RBP19.27■□□□□ 0.68
SQSTM1-216ENST00000626660 UPK3BL1B0FP48 263 aa19.27■□□□□ 0.68
SQSTM1-216ENST00000626660 TBC1D3LB9A6J9 549 aa19.27■□□□□ 0.68
SQSTM1-216ENST00000626660 UPK3BL2E5RIL1 263 aa19.27■□□□□ 0.68
SQSTM1-216ENST00000626660 NEMP1O14524 444 aa19.27■□□□□ 0.68
SQSTM1-216ENST00000626660 TRAFD1O14545 582 aaPredicted RBP19.27■□□□□ 0.68
SQSTM1-216ENST00000626660 HTRA2O43464 458 aaPredicted RBP19.27■□□□□ 0.68
SQSTM1-216ENST00000626660 OPHN1O60890 802 aa19.27■□□□□ 0.68
SQSTM1-216ENST00000626660 CPP00450 1065 aa19.27■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms