RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 PLEKHG3A1L390 1219 aa5.08□□□□□ -1.6
VPS13D-214ENST00000620676 NKRFO15226 690 aaKnown RBP eCLIP5.08□□□□□ -1.6
VPS13D-214ENST00000620676 PPP1R8Q12972 351 aaKnown RBP5.08□□□□□ -1.6
VPS13D-214ENST00000620676 ALG1LQ6GMV1 187 aa5.08□□□□□ -1.6
VPS13D-214ENST00000620676 RPS27LQ71UM5 84 aaKnown RBP5.08□□□□□ -1.6
VPS13D-214ENST00000620676 P2RY8Q86VZ1 359 aa5.08□□□□□ -1.6
VPS13D-214ENST00000620676 TIGD4Q8IY51 512 aa5.08□□□□□ -1.6
VPS13D-214ENST00000620676 NAA50Q9GZZ1 169 aaKnown RBP5.08□□□□□ -1.6
VPS13D-214ENST00000620676 DYRK4Q9NR20 520 aa5.08□□□□□ -1.6
VPS13D-214ENST00000620676 CRNNQ9UBG3 495 aaPredicted RBP5.08□□□□□ -1.6
VPS13D-214ENST00000620676 STOML2Q9UJZ1 356 aa5.08□□□□□ -1.6
VPS13D-214ENST00000620676 GLRA3O75311 464 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 SNRPB2P08579 225 aaKnown RBP5.07□□□□□ -1.6
VPS13D-214ENST00000620676 ERVK-8P63133 956 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 CUL2Q13617 745 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 FRG1Q14331 258 aaKnown RBP5.07□□□□□ -1.6
VPS13D-214ENST00000620676 MYDGFQ969H8 173 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 CDK5RAP1Q96SZ6 601 aaKnown RBP5.07□□□□□ -1.6
VPS13D-214ENST00000620676 WDR11Q9BZH6 1224 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 OAZ3Q9UMX2 235 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 MMP8P22894 467 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 PDHA2P29803 388 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 PRDX5P30044 214 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 HERC3Q15034 1050 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 DCBLD1Q8N8Z6 715 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 SLC37A3Q8NCC5 494 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 SPPL2AQ8TCT8 520 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 UCK2Q9BZX2 261 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 PPIL3Q9H2H8 161 aaKnown RBP5.07□□□□□ -1.6
VPS13D-214ENST00000620676 SYNDIG1Q9H7V2 258 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 VPS9D1Q9Y2B5 631 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 M0QX08 132 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 EEF2KO00418 725 aaKnown RBP5.07□□□□□ -1.6
VPS13D-214ENST00000620676 KPNA6O60684 536 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 RSL1D1O76021 490 aaKnown RBP5.07□□□□□ -1.6
VPS13D-214ENST00000620676 TOXO94900 526 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 ATE1O95260 518 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 PRKAR1AP10644 381 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 GPD1P21695 349 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 KELP23276 732 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 IL4RP24394 825 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 ANXA13P27216 316 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 MTMR1Q13613 665 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 NATD1Q8N6N6 113 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 GALNT11Q8NCW6 608 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 PNPT1Q8TCS8 783 aaKnown RBP5.07□□□□□ -1.6
VPS13D-214ENST00000620676 CMTM6Q9NX76 183 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 RDH8Q9NYR8 311 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 IKZF3Q9UKT9 509 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 PCDHGA8Q9Y5G5 932 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 NR2E3Q9Y5X4 410 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 TCRBV7S3A2A0A539 114 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 FFAR3O14843 346 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 GPR42O15529 346 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 B4GAT1O43505 415 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 BUD23O43709 281 aaKnown RBP5.07□□□□□ -1.6
VPS13D-214ENST00000620676 ZNF517Q6ZMY9 492 aaPredicted RBP5.07□□□□□ -1.6
VPS13D-214ENST00000620676 ZNF781Q8N8C0 355 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 SLC7A14Q8TBB6 771 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 PPP1R2P1Q96PQ5 205 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 PCDH9Q9HC56 1237 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 SPAG4Q9NPE6 437 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 SEMA4BQ9NPR2 832 aaPredicted RBP5.07□□□□□ -1.6
VPS13D-214ENST00000620676 ERVK13-1Q9NX77 482 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 AASSQ9UDR5 926 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 STAP1Q9ULZ2 295 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 TMEM98Q9Y2Y6 226 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 SOCS2O14508 198 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 EXTL3O43909 919 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 SERPINA3P01011 423 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 RBL1P28749 1068 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 INHBEP58166 350 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 TPI1P60174 286 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 MND1Q9BWT6 205 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 SLAMF7Q9NQ25 335 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP5.07□□□□□ -1.6
VPS13D-214ENST00000620676 EIF4G3O43432 1585 aaKnown RBP5.07□□□□□ -1.6
VPS13D-214ENST00000620676 ZNF99A8MXY4 864 aaPredicted RBP5.07□□□□□ -1.6
VPS13D-214ENST00000620676 AP3D1O14617 1153 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 FTH1P02794 183 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 POU2F1P14859 743 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 HOXD13P35453 343 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 GP5P40197 560 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 IRF9Q00978 393 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 TRAP1Q12931 704 aaKnown RBP5.07□□□□□ -1.6
VPS13D-214ENST00000620676 GRM1Q13255 1194 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 NPTX1Q15818 432 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 BANPQ8N9N5 519 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 BTBD9Q96Q07 612 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 HNRNPABQ99729 332 aaKnown RBP5.07□□□□□ -1.6
VPS13D-214ENST00000620676 CEPT1Q9Y6K0 416 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 SALL3Q9BXA9 1300 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 AIREO43918 545 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 SCUBE3Q8IX30 993 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 FEM1CQ96JP0 617 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 ZC3H10Q96K80 434 aaKnown RBP5.07□□□□□ -1.6
VPS13D-214ENST00000620676 RHOBTB2Q9BYZ6 727 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 FAM105AQ9NUU6 356 aa5.07□□□□□ -1.6
VPS13D-214ENST00000620676 H2AFY2Q9P0M6 372 aaPredicted RBP5.07□□□□□ -1.6
VPS13D-214ENST00000620676 FETUBQ9UGM5 382 aa5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms