RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 FASP25445 335 aa10.92□□□□□ -0.66
UPF3A-212ENST00000619079 CTGFP29279 349 aa10.92□□□□□ -0.66
UPF3A-212ENST00000619079 GRIA1P42261 906 aa10.92□□□□□ -0.66
UPF3A-212ENST00000619079 MRPS9P82933 396 aaKnown RBP10.92□□□□□ -0.66
UPF3A-212ENST00000619079 CD300CQ08708 224 aa10.92□□□□□ -0.66
UPF3A-212ENST00000619079 SQLEQ14534 574 aa10.92□□□□□ -0.66
UPF3A-212ENST00000619079 TBCELQ5QJ74 424 aa10.92□□□□□ -0.66
UPF3A-212ENST00000619079 C6orf10Q5SRN2 563 aa10.92□□□□□ -0.66
UPF3A-212ENST00000619079 ZBTB41Q5SVQ8 909 aa10.92□□□□□ -0.66
UPF3A-212ENST00000619079 CYP2R1Q6VVX0 501 aa10.92□□□□□ -0.66
UPF3A-212ENST00000619079 BRSK2Q8IWQ3 736 aa10.92□□□□□ -0.66
UPF3A-212ENST00000619079 PLD6Q8N2A8 252 aaKnown RBP10.92□□□□□ -0.66
UPF3A-212ENST00000619079 ATP6V0D2Q8N8Y2 350 aa10.92□□□□□ -0.66
UPF3A-212ENST00000619079 PCDH19Q8TAB3 1148 aa10.92□□□□□ -0.66
UPF3A-212ENST00000619079 SOCS4Q8WXH5 440 aa10.92□□□□□ -0.66
UPF3A-212ENST00000619079 CENPNQ96H22 339 aaPredicted RBP10.92□□□□□ -0.66
UPF3A-212ENST00000619079 SLC25A23Q9BV35 468 aa10.92□□□□□ -0.66
UPF3A-212ENST00000619079 EHD1Q9H4M9 534 aa10.92□□□□□ -0.66
UPF3A-212ENST00000619079 AGPAT4Q9NRZ5 378 aa10.92□□□□□ -0.66
UPF3A-212ENST00000619079 MAP3K20Q9NYL2 800 aaKnown RBP10.92□□□□□ -0.66
UPF3A-212ENST00000619079 COL11A1P12107 1806 aaPredicted RBP10.92□□□□□ -0.66
UPF3A-212ENST00000619079 A0A0G2JMZ2 1700 aa10.92□□□□□ -0.66
UPF3A-212ENST00000619079 GMNNO75496 209 aa10.92□□□□□ -0.66
UPF3A-212ENST00000619079 RSL1D1O76021 490 aaKnown RBP10.92□□□□□ -0.66
UPF3A-212ENST00000619079 CST3P01034 146 aaPredicted RBP10.92□□□□□ -0.66
UPF3A-212ENST00000619079 PDGFRAP16234 1089 aa10.92□□□□□ -0.66
UPF3A-212ENST00000619079 CYP2B6P20813 491 aa10.92□□□□□ -0.66
UPF3A-212ENST00000619079 PSMA4P25789 261 aaKnown RBP10.92□□□□□ -0.66
UPF3A-212ENST00000619079 HPCAL1P37235 193 aa10.92□□□□□ -0.66
UPF3A-212ENST00000619079 GHRHRQ02643 423 aa10.92□□□□□ -0.66
UPF3A-212ENST00000619079 PRKCZQ05513 592 aa10.92□□□□□ -0.66
UPF3A-212ENST00000619079 BAATQ14032 418 aaPredicted RBP10.92□□□□□ -0.66
UPF3A-212ENST00000619079 FRG1Q14331 258 aaKnown RBP10.92□□□□□ -0.66
UPF3A-212ENST00000619079 SURF1Q15526 300 aa10.92□□□□□ -0.66
UPF3A-212ENST00000619079 ATP6AP1Q15904 470 aa10.92□□□□□ -0.66
UPF3A-212ENST00000619079 ZNF699Q32M78 642 aa10.92□□□□□ -0.66
UPF3A-212ENST00000619079 REP15Q6BDI9 236 aa10.92□□□□□ -0.66
UPF3A-212ENST00000619079 ANKRD13BQ86YJ7 626 aa10.92□□□□□ -0.66
UPF3A-212ENST00000619079 SFRP1Q8N474 314 aa10.92□□□□□ -0.66
UPF3A-212ENST00000619079 LEMD2Q8NC56 503 aa10.92□□□□□ -0.66
UPF3A-212ENST00000619079 CANT1Q8WVQ1 401 aa10.92□□□□□ -0.66
UPF3A-212ENST00000619079 CLEC4DQ8WXI8 215 aa10.92□□□□□ -0.66
UPF3A-212ENST00000619079 SH3YL1Q96HL8 342 aaPredicted RBP10.92□□□□□ -0.66
UPF3A-212ENST00000619079 SMPD3Q9NY59 655 aaPredicted RBP10.92□□□□□ -0.66
UPF3A-212ENST00000619079 COL20A1Q9P218 1284 aa10.92□□□□□ -0.66
UPF3A-212ENST00000619079 TMEM181Q9P2C4 612 aa10.92□□□□□ -0.66
UPF3A-212ENST00000619079 RAD54BQ9Y620 910 aa10.92□□□□□ -0.66
UPF3A-212ENST00000619079 CROCCQ5TZA2 2017 aa10.91□□□□□ -0.66
UPF3A-212ENST00000619079 C2CD4BA6NLJ0 364 aa10.91□□□□□ -0.66
UPF3A-212ENST00000619079 K7ERI5 159 aa10.91□□□□□ -0.66
UPF3A-212ENST00000619079 MDM4O15151 490 aa10.91□□□□□ -0.66
UPF3A-212ENST00000619079 NDUFB5O43674 189 aa10.91□□□□□ -0.66
UPF3A-212ENST00000619079 LTFP02788 710 aa10.91□□□□□ -0.66
UPF3A-212ENST00000619079 TFE3P19532 575 aaPredicted RBP10.91□□□□□ -0.66
UPF3A-212ENST00000619079 DNAJB1P25685 340 aa10.91□□□□□ -0.66
UPF3A-212ENST00000619079 MGAT1P26572 445 aa10.91□□□□□ -0.66
UPF3A-212ENST00000619079 GRIA3P42263 894 aa10.91□□□□□ -0.66
UPF3A-212ENST00000619079 ASPAP45381 313 aa10.91□□□□□ -0.66
UPF3A-212ENST00000619079 FLT3LGP49771 235 aa10.91□□□□□ -0.66
UPF3A-212ENST00000619079 SESN2P58004 480 aaPredicted RBP10.91□□□□□ -0.66
UPF3A-212ENST00000619079 RPS6P62753 249 aaKnown RBP10.91□□□□□ -0.66
UPF3A-212ENST00000619079 RALGDSQ12967 914 aa10.91□□□□□ -0.66
UPF3A-212ENST00000619079 CAMK2BQ13554 666 aa10.91□□□□□ -0.66
UPF3A-212ENST00000619079 DUOXA2Q1HG44 320 aa10.91□□□□□ -0.66
UPF3A-212ENST00000619079 BROXQ5VW32 411 aa10.91□□□□□ -0.66
UPF3A-212ENST00000619079 FSTL4Q6MZW2 842 aa10.91□□□□□ -0.66
UPF3A-212ENST00000619079 GK5Q6ZS86 529 aa10.91□□□□□ -0.66
UPF3A-212ENST00000619079 SPRED1Q7Z699 444 aa10.91□□□□□ -0.66
UPF3A-212ENST00000619079 PELI3Q8N2H9 469 aa10.91□□□□□ -0.66
UPF3A-212ENST00000619079 AFAP1L2Q8N4X5 818 aa10.91□□□□□ -0.66
UPF3A-212ENST00000619079 ABHD11Q8NFV4 315 aa10.91□□□□□ -0.66
UPF3A-212ENST00000619079 URGCPQ8TCY9 931 aa10.91□□□□□ -0.66
UPF3A-212ENST00000619079 RAET1EQ8TD07 263 aa10.91□□□□□ -0.66
UPF3A-212ENST00000619079 ARNTL2Q8WYA1 636 aa10.91□□□□□ -0.66
UPF3A-212ENST00000619079 FAR2Q96K12 515 aa10.91□□□□□ -0.66
UPF3A-212ENST00000619079 GLT1D1Q96MS3 346 aa10.91□□□□□ -0.66
UPF3A-212ENST00000619079 APBA2Q99767 749 aa10.91□□□□□ -0.66
UPF3A-212ENST00000619079 HAPLN2Q9GZV7 340 aa10.91□□□□□ -0.66
UPF3A-212ENST00000619079 DKK3Q9UBP4 350 aa10.91□□□□□ -0.66
UPF3A-212ENST00000619079 ZDHHC2Q9UIJ5 367 aa10.91□□□□□ -0.66
UPF3A-212ENST00000619079 TRAF6Q9Y4K3 522 aa10.91□□□□□ -0.66
UPF3A-212ENST00000619079 NOX1Q9Y5S8 564 aa10.91□□□□□ -0.66
UPF3A-212ENST00000619079 A0A0A0MRY4 1105 aa10.9□□□□□ -0.66
UPF3A-212ENST00000619079 DHRS12A0PJE2 317 aa10.9□□□□□ -0.66
UPF3A-212ENST00000619079 DDHD2O94830 711 aa10.9□□□□□ -0.66
UPF3A-212ENST00000619079 C2P06681 752 aa10.9□□□□□ -0.66
UPF3A-212ENST00000619079 ERVK-10P10266 1014 aa10.9□□□□□ -0.66
UPF3A-212ENST00000619079 MATN1P21941 496 aa10.9□□□□□ -0.66
UPF3A-212ENST00000619079 IDUAP35475 653 aa10.9□□□□□ -0.66
UPF3A-212ENST00000619079 OPRL1P41146 370 aa10.9□□□□□ -0.66
UPF3A-212ENST00000619079 NAMPTP43490 491 aa10.9□□□□□ -0.66
UPF3A-212ENST00000619079 CSE1LP55060 971 aaKnown RBP10.9□□□□□ -0.66
UPF3A-212ENST00000619079 CRADDP78560 199 aa10.9□□□□□ -0.66
UPF3A-212ENST00000619079 GRB14Q14449 540 aa10.9□□□□□ -0.66
UPF3A-212ENST00000619079 STRA8Q7Z7C7 330 aa10.9□□□□□ -0.66
UPF3A-212ENST00000619079 ITIH5Q86UX2 942 aa10.9□□□□□ -0.66
UPF3A-212ENST00000619079 EPHX4Q8IUS5 362 aa10.9□□□□□ -0.66
UPF3A-212ENST00000619079 RXFP2Q8WXD0 754 aa10.9□□□□□ -0.66
UPF3A-212ENST00000619079 ROPN1LQ96C74 230 aa10.9□□□□□ -0.66
UPF3A-212ENST00000619079 MARK4Q96L34 752 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms