RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 DNTTP04053 509 aa19.92■□□□□ 0.78
UPF3A-211ENST00000618700 UGT2B4P06133 528 aa19.92■□□□□ 0.78
UPF3A-211ENST00000618700 COILP38432 576 aaPredicted RBP19.92■□□□□ 0.78
UPF3A-211ENST00000618700 SKOR1P84550 965 aa19.92■□□□□ 0.78
UPF3A-211ENST00000618700 ANGPT1Q15389 498 aa19.92■□□□□ 0.78
UPF3A-211ENST00000618700 SLC14A2Q15849 920 aa19.92■□□□□ 0.78
UPF3A-211ENST00000618700 P3H1Q32P28 736 aa19.92■□□□□ 0.78
UPF3A-211ENST00000618700 ZNF528Q3MIS6 628 aa19.92■□□□□ 0.78
UPF3A-211ENST00000618700 ZNF805Q5CZA5 627 aa19.92■□□□□ 0.78
UPF3A-211ENST00000618700 ITPRIPL1Q6GPH6 555 aa19.92■□□□□ 0.78
UPF3A-211ENST00000618700 GDPD4Q6W3E5 623 aa19.92■□□□□ 0.78
UPF3A-211ENST00000618700 ZNF572Q7Z3I7 529 aaPredicted RBP19.92■□□□□ 0.78
UPF3A-211ENST00000618700 PRPF39Q86UA1 669 aaKnown RBP19.92■□□□□ 0.78
UPF3A-211ENST00000618700 ARRDC3Q96B67 414 aa19.92■□□□□ 0.78
UPF3A-211ENST00000618700 ECHDC3Q96DC8 303 aa19.92■□□□□ 0.78
UPF3A-211ENST00000618700 ZNF641Q96N77 438 aaPredicted RBP19.92■□□□□ 0.78
UPF3A-211ENST00000618700 FCRL5Q96RD9 977 aa19.92■□□□□ 0.78
UPF3A-211ENST00000618700 GORASP1Q9BQQ3 440 aa19.92■□□□□ 0.78
UPF3A-211ENST00000618700 TPSD1Q9BZJ3 242 aa19.92■□□□□ 0.78
UPF3A-211ENST00000618700 MRFAP1Q9Y605 127 aa19.92■□□□□ 0.78
UPF3A-211ENST00000618700 TSPAN11A1L157 253 aa19.91■□□□□ 0.78
UPF3A-211ENST00000618700 KPNA3O00505 521 aaPredicted RBP19.91■□□□□ 0.78
UPF3A-211ENST00000618700 AXIN1O15169 862 aa19.91■□□□□ 0.78
UPF3A-211ENST00000618700 HTRA2O43464 458 aaPredicted RBP19.91■□□□□ 0.78
UPF3A-211ENST00000618700 SERPINF2P08697 491 aa19.91■□□□□ 0.78
UPF3A-211ENST00000618700 ITGB7P26010 798 aa19.91■□□□□ 0.78
UPF3A-211ENST00000618700 SERPINA4P29622 427 aa19.91■□□□□ 0.78
UPF3A-211ENST00000618700 CD86P42081 329 aa19.91■□□□□ 0.78
UPF3A-211ENST00000618700 BCL2L1Q07817 233 aa19.91■□□□□ 0.78
UPF3A-211ENST00000618700 TRAF2Q12933 501 aa19.91■□□□□ 0.78
UPF3A-211ENST00000618700 TUBB2AQ13885 445 aa19.91■□□□□ 0.78
UPF3A-211ENST00000618700 POM121L1PQ3SYA9 428 aa19.91■□□□□ 0.78
UPF3A-211ENST00000618700 TTC31Q49AM3 519 aaPredicted RBP19.91■□□□□ 0.78
UPF3A-211ENST00000618700 USP30Q70CQ3 517 aa19.91■□□□□ 0.78
UPF3A-211ENST00000618700 PARS2Q7L3T8 475 aaKnown RBP19.91■□□□□ 0.78
UPF3A-211ENST00000618700 WDR5BQ86VZ2 330 aa19.91■□□□□ 0.78
UPF3A-211ENST00000618700 CAMK1DQ8IU85 385 aa19.91■□□□□ 0.78
UPF3A-211ENST00000618700 KLHDC8BQ8IXV7 354 aa19.91■□□□□ 0.78
UPF3A-211ENST00000618700 PGBD3Q8N328 593 aa19.91■□□□□ 0.78
UPF3A-211ENST00000618700 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP19.91■□□□□ 0.78
UPF3A-211ENST00000618700 GLIS1Q8NBF1 620 aa19.91■□□□□ 0.78
UPF3A-211ENST00000618700 ATL2Q8NHH9 583 aa19.91■□□□□ 0.78
UPF3A-211ENST00000618700 PPP1R16AQ96I34 528 aa19.91■□□□□ 0.78
UPF3A-211ENST00000618700 KLHL32Q96NJ5 620 aa19.91■□□□□ 0.78
UPF3A-211ENST00000618700 TUBB2BQ9BVA1 445 aa19.91■□□□□ 0.78
UPF3A-211ENST00000618700 SUV39H2Q9H5I1 410 aa19.91■□□□□ 0.78
UPF3A-211ENST00000618700 CD93Q9NPY3 652 aa19.91■□□□□ 0.78
UPF3A-211ENST00000618700 ITM2CQ9NQX7 267 aa19.91■□□□□ 0.78
UPF3A-211ENST00000618700 DKK3Q9UBP4 350 aa19.91■□□□□ 0.78
UPF3A-211ENST00000618700 SERGEFQ9UGK8 458 aa19.91■□□□□ 0.78
UPF3A-211ENST00000618700 RSPH14Q9UHP6 348 aa19.91■□□□□ 0.78
UPF3A-211ENST00000618700 ANKRD36A6QL64 1941 aa19.9■□□□□ 0.78
UPF3A-211ENST00000618700 PLXND1Q9Y4D7 1925 aa19.9■□□□□ 0.78
UPF3A-211ENST00000618700 CCDC188H7C350 402 aa19.9■□□□□ 0.78
UPF3A-211ENST00000618700 WHAMMP3Q1A5X7 153 aa19.9■□□□□ 0.78
UPF3A-211ENST00000618700 CCDC137Q6PK04 289 aaKnown RBP19.9■□□□□ 0.78
UPF3A-211ENST00000618700 SPATA22Q8NHS9 363 aa19.9■□□□□ 0.78
UPF3A-211ENST00000618700 OXNAD1Q96HP4 312 aaPredicted RBP19.9■□□□□ 0.78
UPF3A-211ENST00000618700 RBM15Q96T37 977 aaKnown RBP eCLIP19.9■□□□□ 0.78
UPF3A-211ENST00000618700 TDRD1Q9BXT4 1180 aaKnown RBP19.9■□□□□ 0.78
UPF3A-211ENST00000618700 HDAC8Q9BY41 377 aa19.9■□□□□ 0.78
UPF3A-211ENST00000618700 FAM126AQ9BYI3 521 aaPredicted RBP19.9■□□□□ 0.78
UPF3A-211ENST00000618700 DDX47Q9H0S4 455 aaKnown RBP19.9■□□□□ 0.78
UPF3A-211ENST00000618700 FZD6O60353 706 aa19.89■□□□□ 0.77
UPF3A-211ENST00000618700 ZNF217O75362 1048 aa19.89■□□□□ 0.77
UPF3A-211ENST00000618700 MT-CYBP00156 380 aaPredicted RBP19.89■□□□□ 0.77
UPF3A-211ENST00000618700 IFNB1P01574 187 aa19.89■□□□□ 0.77
UPF3A-211ENST00000618700 SP9P0CG40 484 aa19.89■□□□□ 0.77
UPF3A-211ENST00000618700 ACADMP11310 421 aa19.89■□□□□ 0.77
UPF3A-211ENST00000618700 PSMB4P28070 264 aa19.89■□□□□ 0.77
UPF3A-211ENST00000618700 P2RY2P41231 377 aa19.89■□□□□ 0.77
UPF3A-211ENST00000618700 FNTBP49356 437 aa19.89■□□□□ 0.77
UPF3A-211ENST00000618700 TPMTP51580 245 aa19.89■□□□□ 0.77
UPF3A-211ENST00000618700 LMNB2Q03252 620 aa19.89■□□□□ 0.77
UPF3A-211ENST00000618700 EML5Q05BV3 1969 aa19.89■□□□□ 0.77
UPF3A-211ENST00000618700 PIP5KL1Q5T9C9 394 aa19.89■□□□□ 0.77
UPF3A-211ENST00000618700 AGBL4Q5VU57 503 aa19.89■□□□□ 0.77
UPF3A-211ENST00000618700 BRAT1Q6PJG6 821 aa19.89■□□□□ 0.77
UPF3A-211ENST00000618700 ARHGEF18Q6ZSZ5 1173 aa19.89■□□□□ 0.77
UPF3A-211ENST00000618700 KBTBD6Q86V97 674 aa19.89■□□□□ 0.77
UPF3A-211ENST00000618700 LONP2Q86WA8 852 aa19.89■□□□□ 0.77
UPF3A-211ENST00000618700 ZSWIM9Q86XI8 627 aa19.89■□□□□ 0.77
UPF3A-211ENST00000618700 HDDC3Q8N4P3 179 aa19.89■□□□□ 0.77
UPF3A-211ENST00000618700 CCDC89Q8N998 374 aa19.89■□□□□ 0.77
UPF3A-211ENST00000618700 SPATA4Q8NEY3 305 aa19.89■□□□□ 0.77
UPF3A-211ENST00000618700 PRSS33Q8NF86 280 aa19.89■□□□□ 0.77
UPF3A-211ENST00000618700 HCAR2Q8TDS4 363 aa19.89■□□□□ 0.77
UPF3A-211ENST00000618700 SLCO2A1Q92959 643 aa19.89■□□□□ 0.77
UPF3A-211ENST00000618700 PRRX2Q99811 253 aa19.89■□□□□ 0.77
UPF3A-211ENST00000618700 VPS45Q9NRW7 570 aa19.89■□□□□ 0.77
UPF3A-211ENST00000618700 FBXL12Q9NXK8 326 aa19.89■□□□□ 0.77
UPF3A-211ENST00000618700 PCYOX1Q9UHG3 505 aa19.89■□□□□ 0.77
UPF3A-211ENST00000618700 FZD4Q9ULV1 537 aa19.89■□□□□ 0.77
UPF3A-211ENST00000618700 NEU2Q9Y3R4 380 aa19.89■□□□□ 0.77
UPF3A-211ENST00000618700 PCDHGC4Q9Y5F7 938 aa19.89■□□□□ 0.77
UPF3A-211ENST00000618700 RAI2Q9Y5P3 530 aa19.89■□□□□ 0.77
UPF3A-211ENST00000618700 A0A1W2PP55 124 aa19.88■□□□□ 0.77
UPF3A-211ENST00000618700 C16orf96A6NNT2 1141 aa19.88■□□□□ 0.77
UPF3A-211ENST00000618700 F5H423 210 aaPredicted RBP19.88■□□□□ 0.77
UPF3A-211ENST00000618700 PLK4O00444 970 aa19.88■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms