RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 TRPM4Q8TD43 1214 aa14.11□□□□□ -0.15
CPSF1-212ENST00000616140 PRRG3Q9BZD7 231 aa14.11□□□□□ -0.15
CPSF1-212ENST00000616140 AJAP1Q9UKB5 411 aaPredicted RBP14.11□□□□□ -0.15
CPSF1-212ENST00000616140 EPN2O95208 641 aa14.11□□□□□ -0.15
CPSF1-212ENST00000616140 MLYCDO95822 493 aa14.11□□□□□ -0.15
CPSF1-212ENST00000616140 COX7A2P14406 83 aa14.11□□□□□ -0.15
CPSF1-212ENST00000616140 ETS2P15036 469 aa14.11□□□□□ -0.15
CPSF1-212ENST00000616140 NELFEP18615 380 aaKnown RBP14.11□□□□□ -0.15
CPSF1-212ENST00000616140 CRHR1P34998 444 aa14.11□□□□□ -0.15
CPSF1-212ENST00000616140 PPM1JQ5JR12 505 aa14.11□□□□□ -0.15
CPSF1-212ENST00000616140 CEP78Q5JTW2 689 aa14.11□□□□□ -0.15
CPSF1-212ENST00000616140 AAGABQ6PD74 315 aa14.11□□□□□ -0.15
CPSF1-212ENST00000616140 HPS6Q86YV9 775 aa14.11□□□□□ -0.15
CPSF1-212ENST00000616140 PQLC1Q8N2U9 271 aa14.11□□□□□ -0.15
CPSF1-212ENST00000616140 C12orf50Q8NA57 414 aaPredicted RBP14.11□□□□□ -0.15
CPSF1-212ENST00000616140 BPIFB6Q8NFQ5 453 aa14.11□□□□□ -0.15
CPSF1-212ENST00000616140 ZCCHC2Q9C0B9 1178 aaKnown RBP14.11□□□□□ -0.15
CPSF1-212ENST00000616140 DENND2DQ9H6A0 471 aaPredicted RBP14.11□□□□□ -0.15
CPSF1-212ENST00000616140 XPNPEP1Q9NQW7 623 aa14.11□□□□□ -0.15
CPSF1-212ENST00000616140 ZNHIT2Q9UHR6 403 aa14.11□□□□□ -0.15
CPSF1-212ENST00000616140 ATXN2Q99700 1313 aaKnown RBP14.11□□□□□ -0.15
CPSF1-212ENST00000616140 SMIM28A0A1B0GU29 152 aa14.11□□□□□ -0.15
CPSF1-212ENST00000616140 SMIM31A0A1B0GVY4 71 aa14.11□□□□□ -0.15
CPSF1-212ENST00000616140 DHRS12A0PJE2 317 aa14.11□□□□□ -0.15
CPSF1-212ENST00000616140 GPR25O00155 361 aa14.11□□□□□ -0.15
CPSF1-212ENST00000616140 MFSD11O43934 449 aa14.11□□□□□ -0.15
CPSF1-212ENST00000616140 KCNH1O95259 989 aa14.11□□□□□ -0.15
CPSF1-212ENST00000616140 TTKP33981 857 aa14.11□□□□□ -0.15
CPSF1-212ENST00000616140 TIGD2Q4W5G0 525 aa14.11□□□□□ -0.15
CPSF1-212ENST00000616140 TREML2Q5T2D2 321 aa14.11□□□□□ -0.15
CPSF1-212ENST00000616140 HECTD3Q5T447 861 aa14.11□□□□□ -0.15
CPSF1-212ENST00000616140 C9orf57Q5W0N0 161 aa14.11□□□□□ -0.15
CPSF1-212ENST00000616140 CASP12Q6UXS9 341 aa14.11□□□□□ -0.15
CPSF1-212ENST00000616140 MRPL9Q9BYD2 267 aaKnown RBP14.11□□□□□ -0.15
CPSF1-212ENST00000616140 CHRAC1Q9NRG0 131 aa14.11□□□□□ -0.15
CPSF1-212ENST00000616140 KLHL3Q9UH77 587 aa14.11□□□□□ -0.15
CPSF1-212ENST00000616140 RPL38P63173 70 aaKnown RBP14.11□□□□□ -0.15
CPSF1-212ENST00000616140 FOLH1Q04609 750 aa14.11□□□□□ -0.15
CPSF1-212ENST00000616140 SEMA5AQ13591 1074 aa14.11□□□□□ -0.15
CPSF1-212ENST00000616140 TSHZ1Q6ZSZ6 1077 aa14.11□□□□□ -0.15
CPSF1-212ENST00000616140 RNFT2Q96EX2 444 aa14.11□□□□□ -0.15
CPSF1-212ENST00000616140 NPAS2Q99743 824 aa14.11□□□□□ -0.15
CPSF1-212ENST00000616140 APOBEC3GQ9HC16 384 aaKnown RBP14.11□□□□□ -0.15
CPSF1-212ENST00000616140 TRAF6Q9Y4K3 522 aa14.11□□□□□ -0.15
CPSF1-212ENST00000616140 CYP7B1O75881 506 aa14.1□□□□□ -0.15
CPSF1-212ENST00000616140 CAPZA2P47755 286 aa14.1□□□□□ -0.15
CPSF1-212ENST00000616140 POLR2LP62875 67 aaKnown RBP14.1□□□□□ -0.15
CPSF1-212ENST00000616140 MRPS6P82932 125 aaKnown RBP14.1□□□□□ -0.15
CPSF1-212ENST00000616140 TRIM25Q14258 630 aaKnown RBP14.1□□□□□ -0.15
CPSF1-212ENST00000616140 INAQ16352 499 aa14.1□□□□□ -0.15
CPSF1-212ENST00000616140 CPSF6Q16630 551 aaKnown RBP eCLIP14.1□□□□□ -0.152e-9■■■■■ 35
CPSF1-212ENST00000616140 SPANXN2Q5MJ10 180 aa14.1□□□□□ -0.15
CPSF1-212ENST00000616140 LPCAT4Q643R3 524 aa14.1□□□□□ -0.15
CPSF1-212ENST00000616140 SLC4A11Q8NBS3 891 aa14.1□□□□□ -0.15
CPSF1-212ENST00000616140 MFSD3Q96ES6 412 aa14.1□□□□□ -0.15
CPSF1-212ENST00000616140 GLOD4Q9HC38 313 aa14.1□□□□□ -0.15
CPSF1-212ENST00000616140 CORO1CQ9ULV4 474 aaPredicted RBP14.1□□□□□ -0.15
CPSF1-212ENST00000616140 KLHL20Q9Y2M5 609 aa14.1□□□□□ -0.15
CPSF1-212ENST00000616140 SLC27A5Q9Y2P5 690 aa14.1□□□□□ -0.15
CPSF1-212ENST00000616140 TDRKHQ9Y2W6 561 aaKnown RBP14.1□□□□□ -0.15
CPSF1-212ENST00000616140 PCDHB12Q9Y5F1 795 aa14.1□□□□□ -0.15
CPSF1-212ENST00000616140 H3BMM5 538 aa14.1□□□□□ -0.15
CPSF1-212ENST00000616140 CD3EAPO15446 510 aaKnown RBP14.1□□□□□ -0.15
CPSF1-212ENST00000616140 PEX10O60683 326 aa14.1□□□□□ -0.15
CPSF1-212ENST00000616140 SERPINI2O75830 405 aa14.1□□□□□ -0.15
CPSF1-212ENST00000616140 TPSB2P20231 275 aa14.1□□□□□ -0.15
CPSF1-212ENST00000616140 ADSSP30520 456 aa14.1□□□□□ -0.15
CPSF1-212ENST00000616140 CD52P31358 61 aa14.1□□□□□ -0.15
CPSF1-212ENST00000616140 TPSAB1Q15661 275 aa14.1□□□□□ -0.15
CPSF1-212ENST00000616140 LBX2Q6XYB7 198 aa14.1□□□□□ -0.15
CPSF1-212ENST00000616140 GPRIN3Q6ZVF9 776 aa14.1□□□□□ -0.15
CPSF1-212ENST00000616140 TRAPPC5Q8IUR0 188 aa14.1□□□□□ -0.15
CPSF1-212ENST00000616140 SFRP1Q8N474 314 aa14.1□□□□□ -0.15
CPSF1-212ENST00000616140 FAM105AQ9NUU6 356 aa14.1□□□□□ -0.15
CPSF1-212ENST00000616140 CAPN8A6NHC0 703 aa14.1□□□□□ -0.15
CPSF1-212ENST00000616140 TRAFD1O14545 582 aaPredicted RBP14.1□□□□□ -0.15
CPSF1-212ENST00000616140 LINC00032P0C843 101 aa14.1□□□□□ -0.15
CPSF1-212ENST00000616140 HADHBP55084 474 aaKnown RBP14.1□□□□□ -0.15
CPSF1-212ENST00000616140 EPS8Q12929 822 aa14.1□□□□□ -0.15
CPSF1-212ENST00000616140 ACOX1Q15067 660 aa14.1□□□□□ -0.15
CPSF1-212ENST00000616140 DGKKQ5KSL6 1271 aa14.1□□□□□ -0.15
CPSF1-212ENST00000616140 RSBN1Q5VWQ0 802 aaPredicted RBP14.1□□□□□ -0.15
CPSF1-212ENST00000616140 LUZP2Q86TE4 346 aa14.1□□□□□ -0.15
CPSF1-212ENST00000616140 C3orf18Q9UK00 162 aa14.1□□□□□ -0.15
CPSF1-212ENST00000616140 PCDHB9Q9Y5E1 797 aa14.1□□□□□ -0.15
CPSF1-212ENST00000616140 IGKV6D-41A0A0C4DH26 115 aa14.09□□□□□ -0.15
CPSF1-212ENST00000616140 TULP2O00295 520 aa14.09□□□□□ -0.15
CPSF1-212ENST00000616140 TM7SF2O76062 418 aa14.09□□□□□ -0.15
CPSF1-212ENST00000616140 TALDO1P37837 337 aa14.09□□□□□ -0.15
CPSF1-212ENST00000616140 CRYBB1P53674 252 aaPredicted RBP14.09□□□□□ -0.15
CPSF1-212ENST00000616140 PLCL1Q15111 1095 aa14.09□□□□□ -0.15
CPSF1-212ENST00000616140 DAW1Q8N136 415 aa14.09□□□□□ -0.15
CPSF1-212ENST00000616140 STMN3Q9NZ72 180 aa14.09□□□□□ -0.15
CPSF1-212ENST00000616140 LGALS13Q9UHV8 139 aa14.09□□□□□ -0.15
CPSF1-212ENST00000616140 PCDHGC3Q9UN70 934 aa14.09□□□□□ -0.15
CPSF1-212ENST00000616140 LOC100506127A0A0U1RQW1 187 aa14.09□□□□□ -0.15
CPSF1-212ENST00000616140 KPNA4O00629 521 aaPredicted RBP14.09□□□□□ -0.15
CPSF1-212ENST00000616140 TLR5O60602 858 aa14.09□□□□□ -0.15
CPSF1-212ENST00000616140 MTA2O94776 668 aa14.09□□□□□ -0.15
CPSF1-212ENST00000616140 PABPC1P11940 636 aaKnown RBP14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms