RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 PTPRNQ16849 979 aa12.9□□□□□ -0.34
UPF1-208ENST00000600012 KIF19Q2TAC6 998 aa12.9□□□□□ -0.34
UPF1-208ENST00000600012 FBXL22Q6P050 247 aa12.9□□□□□ -0.34
UPF1-208ENST00000600012 RFWD3Q6PCD5 774 aa12.9□□□□□ -0.34
UPF1-208ENST00000600012 TMCO3Q6UWJ1 677 aa12.9□□□□□ -0.34
UPF1-208ENST00000600012 TMPRSS7Q7RTY8 843 aa12.9□□□□□ -0.34
UPF1-208ENST00000600012 LGI2Q8N0V4 545 aa12.9□□□□□ -0.34
UPF1-208ENST00000600012 NPWQ8N729 165 aa12.9□□□□□ -0.34
UPF1-208ENST00000600012 SLC35B2Q8TB61 432 aa12.9□□□□□ -0.34
UPF1-208ENST00000600012 LRRN4Q8WUT4 740 aa12.9□□□□□ -0.34
UPF1-208ENST00000600012 IGSF8Q969P0 613 aa12.9□□□□□ -0.34
UPF1-208ENST00000600012 BIRC7Q96CA5 298 aa12.9□□□□□ -0.34
UPF1-208ENST00000600012 C1orf74Q96LT6 269 aa12.9□□□□□ -0.34
UPF1-208ENST00000600012 RPRD1AQ96P16 312 aaPredicted RBP12.9□□□□□ -0.34
UPF1-208ENST00000600012 C10orf88Q9H8K7 445 aa12.9□□□□□ -0.34
UPF1-208ENST00000600012 ANKZF1Q9H8Y5 726 aa12.9□□□□□ -0.34
UPF1-208ENST00000600012 SGK2Q9HBY8 427 aa12.9□□□□□ -0.34
UPF1-208ENST00000600012 TM9SF3Q9HD45 589 aa12.9□□□□□ -0.34
UPF1-208ENST00000600012 HOMER3Q9NSC5 361 aa12.9□□□□□ -0.34
UPF1-208ENST00000600012 DTLQ9NZJ0 730 aa12.9□□□□□ -0.34
UPF1-208ENST00000600012 MPP6Q9NZW5 540 aa12.9□□□□□ -0.34
UPF1-208ENST00000600012 STIM2Q9P246 746 aa12.9□□□□□ -0.34
UPF1-208ENST00000600012 SUN2Q9UH99 717 aa12.9□□□□□ -0.34
UPF1-208ENST00000600012 SNX11Q9Y5W9 270 aa12.9□□□□□ -0.34
UPF1-208ENST00000600012 SLCO1B1Q9Y6L6 691 aa12.9□□□□□ -0.34
UPF1-208ENST00000600012 URB1O60287 2271 aaKnown RBP12.9□□□□□ -0.35
UPF1-208ENST00000600012 FREM2Q5SZK8 3169 aa12.89□□□□□ -0.35
UPF1-208ENST00000600012 ZSCAN5CA6NGD5 496 aaPredicted RBP12.89□□□□□ -0.35
UPF1-208ENST00000600012 F5H5T6 163 aa12.89□□□□□ -0.35
UPF1-208ENST00000600012 H7C0C1 242 aa12.89□□□□□ -0.35
UPF1-208ENST00000600012 FGF10O15520 208 aaPredicted RBP12.89□□□□□ -0.35
UPF1-208ENST00000600012 CNTN5O94779 1100 aa12.89□□□□□ -0.35
UPF1-208ENST00000600012 DKK1O94907 266 aa12.89□□□□□ -0.35
UPF1-208ENST00000600012 HEXIM1O94992 359 aaKnown RBP12.89□□□□□ -0.35
UPF1-208ENST00000600012 ATXN1LP0C7T5 689 aaKnown RBP12.89□□□□□ -0.35
UPF1-208ENST00000600012 RBP3P10745 1247 aa12.89□□□□□ -0.35
UPF1-208ENST00000600012 CD27P26842 260 aa12.89□□□□□ -0.35
UPF1-208ENST00000600012 HTR7P34969 479 aa12.89□□□□□ -0.35
UPF1-208ENST00000600012 GRK6P43250 576 aa12.89□□□□□ -0.35
UPF1-208ENST00000600012 ATP5OP48047 213 aa12.89□□□□□ -0.35
UPF1-208ENST00000600012 CCT8P50990 548 aa12.89□□□□□ -0.35
UPF1-208ENST00000600012 DR1Q01658 176 aa12.89□□□□□ -0.35
UPF1-208ENST00000600012 MTA1Q13330 715 aa12.89□□□□□ -0.35
UPF1-208ENST00000600012 DHX34Q14147 1143 aaKnown RBP12.89□□□□□ -0.35
UPF1-208ENST00000600012 OASLQ15646 514 aaKnown RBP12.89□□□□□ -0.35
UPF1-208ENST00000600012 ALFQ53S48 1182 aa12.89□□□□□ -0.35
UPF1-208ENST00000600012 ZNF776Q68DI1 518 aaPredicted RBP12.89□□□□□ -0.35
UPF1-208ENST00000600012 CCDC70Q6NSX1 233 aa12.89□□□□□ -0.35
UPF1-208ENST00000600012 LRRC31Q6UY01 552 aa12.89□□□□□ -0.35
UPF1-208ENST00000600012 PRUNE1Q86TP1 453 aa12.89□□□□□ -0.35
UPF1-208ENST00000600012 ZC3H18Q86VM9 953 aaKnown RBP12.89□□□□□ -0.35
UPF1-208ENST00000600012 JAMLQ86YT9 394 aa12.89□□□□□ -0.35
UPF1-208ENST00000600012 TP53INP2Q8IXH6 220 aa12.89□□□□□ -0.35
UPF1-208ENST00000600012 GALNT15Q8N3T1 639 aa12.89□□□□□ -0.35
UPF1-208ENST00000600012 CELF6Q96J87 481 aaKnown RBP12.89□□□□□ -0.35
UPF1-208ENST00000600012 PRICKLE1Q96MT3 831 aaPredicted RBP12.89□□□□□ -0.35
UPF1-208ENST00000600012 RUNDC3BQ96NL0 473 aa12.89□□□□□ -0.35
UPF1-208ENST00000600012 FRMD8P1Q9BZ68 369 aaPredicted RBP12.89□□□□□ -0.35
UPF1-208ENST00000600012 ZYG11BQ9C0D3 744 aa12.89□□□□□ -0.35
UPF1-208ENST00000600012 CATSPERBQ9H7T0 1116 aa12.89□□□□□ -0.35
UPF1-208ENST00000600012 NDFIP2Q9NV92 336 aa12.89□□□□□ -0.35
UPF1-208ENST00000600012 TOR4AQ9NXH8 423 aa12.89□□□□□ -0.35
UPF1-208ENST00000600012 DKK4Q9UBT3 224 aa12.89□□□□□ -0.35
UPF1-208ENST00000600012 PCYOX1Q9UHG3 505 aa12.89□□□□□ -0.35
UPF1-208ENST00000600012 DMGDHQ9UI17 866 aaKnown RBP12.89□□□□□ -0.35
UPF1-208ENST00000600012 SCML1Q9UN30 329 aa12.89□□□□□ -0.35
UPF1-208ENST00000600012 ANKRD6Q9Y2G4 727 aa12.89□□□□□ -0.35
UPF1-208ENST00000600012 PLXNA2O75051 1894 aa12.89□□□□□ -0.35
UPF1-208ENST00000600012 IGLV3-10A0A075B6K4 115 aa12.88□□□□□ -0.35
UPF1-208ENST00000600012 PCDHGA12O60330 932 aa12.88□□□□□ -0.35
UPF1-208ENST00000600012 TBL1XO60907 577 aa12.88□□□□□ -0.35
UPF1-208ENST00000600012 FSBPO95073 299 aa12.88□□□□□ -0.35
UPF1-208ENST00000600012 ECEL1O95672 775 aa12.88□□□□□ -0.35
UPF1-208ENST00000600012 CD70P32970 193 aa12.88□□□□□ -0.35
UPF1-208ENST00000600012 SGSHP51688 502 aa12.88□□□□□ -0.35
UPF1-208ENST00000600012 INAVAQ3KP66 663 aa12.88□□□□□ -0.35
UPF1-208ENST00000600012 GLE1Q53GS7 698 aaKnown RBP12.88□□□□□ -0.35
UPF1-208ENST00000600012 DRICH1Q6PGQ1 229 aaPredicted RBP12.88□□□□□ -0.35
UPF1-208ENST00000600012 DARS2Q6PI48 645 aaKnown RBP12.88□□□□□ -0.35
UPF1-208ENST00000600012 USP30Q70CQ3 517 aa12.88□□□□□ -0.35
UPF1-208ENST00000600012 TFAP2DQ7Z6R9 452 aa12.88□□□□□ -0.35
UPF1-208ENST00000600012 MFN1Q8IWA4 741 aa12.88□□□□□ -0.35
UPF1-208ENST00000600012 CFAP52Q8N1V2 620 aa12.88□□□□□ -0.35
UPF1-208ENST00000600012 RTL3Q8N8U3 475 aaKnown RBP12.88□□□□□ -0.35
UPF1-208ENST00000600012 HJURPQ8NCD3 748 aaPredicted RBP12.88□□□□□ -0.35
UPF1-208ENST00000600012 MDM1Q8TC05 714 aa12.88□□□□□ -0.35
UPF1-208ENST00000600012 WFDC5Q8TCV5 224 aa12.88□□□□□ -0.35
UPF1-208ENST00000600012 AZIN2Q96A70 460 aa12.88□□□□□ -0.35
UPF1-208ENST00000600012 OLFM3Q96PB7 478 aa12.88□□□□□ -0.35
UPF1-208ENST00000600012 DDX50Q9BQ39 737 aaKnown RBP12.88□□□□□ -0.35
UPF1-208ENST00000600012 TMEM121Q9BTD3 319 aa12.88□□□□□ -0.35
UPF1-208ENST00000600012 KLC2Q9H0B6 622 aa12.88□□□□□ -0.35
UPF1-208ENST00000600012 PPARGC1AQ9UBK2 798 aaKnown RBP12.88□□□□□ -0.35
UPF1-208ENST00000600012 ZNF148Q9UQR1 794 aa12.88□□□□□ -0.35
UPF1-208ENST00000600012 NCKAP1Q9Y2A7 1128 aa12.88□□□□□ -0.35
UPF1-208ENST00000600012 BTBD3Q9Y2F9 522 aa12.88□□□□□ -0.35
UPF1-208ENST00000600012 ESYT3A0FGR9 886 aa12.87□□□□□ -0.35
UPF1-208ENST00000600012 TYW5A2RUC4 315 aaKnown RBP12.87□□□□□ -0.35
UPF1-208ENST00000600012 FAM187AA6NFU0 413 aa12.87□□□□□ -0.35
UPF1-208ENST00000600012 DRGXA6NNA5 263 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms