RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 BNC1Q01954 994 aa14.36□□□□□ -0.11
SHKBP1-217ENST00000598558 SEMG2Q02383 582 aa14.36□□□□□ -0.11
SHKBP1-217ENST00000598558 DSC2Q02487 901 aa14.36□□□□□ -0.11
SHKBP1-217ENST00000598558 RAD51Q06609 339 aa14.36□□□□□ -0.11
SHKBP1-217ENST00000598558 AP1B1Q10567 949 aa14.36□□□□□ -0.11
SHKBP1-217ENST00000598558 WASHC5Q12768 1159 aa14.36□□□□□ -0.11
SHKBP1-217ENST00000598558 SFSWAPQ12872 951 aaKnown RBP14.36□□□□□ -0.11
SHKBP1-217ENST00000598558 TRAF2Q12933 501 aa14.36□□□□□ -0.11
SHKBP1-217ENST00000598558 FGL2Q14314 439 aa14.36□□□□□ -0.11
SHKBP1-217ENST00000598558 PDK1Q15118 436 aa14.36□□□□□ -0.11
SHKBP1-217ENST00000598558 PRKD1Q15139 912 aaPredicted RBP14.36□□□□□ -0.11
SHKBP1-217ENST00000598558 SEL1L3Q68CR1 1132 aa14.36□□□□□ -0.11
SHKBP1-217ENST00000598558 ZC3H18Q86VM9 953 aaKnown RBP14.36□□□□□ -0.11
SHKBP1-217ENST00000598558 SYT12Q8IV01 421 aa14.36□□□□□ -0.11
SHKBP1-217ENST00000598558 RGL4Q8IZJ4 473 aa14.36□□□□□ -0.11
SHKBP1-217ENST00000598558 KLK6Q92876 244 aa14.36□□□□□ -0.11
SHKBP1-217ENST00000598558 FOXJ1Q92949 421 aa14.36□□□□□ -0.11
SHKBP1-217ENST00000598558 ECHDC3Q96DC8 303 aa14.36□□□□□ -0.11
SHKBP1-217ENST00000598558 TLR10Q9BXR5 811 aa14.36□□□□□ -0.11
SHKBP1-217ENST00000598558 OSBPL1AQ9BXW6 950 aa14.36□□□□□ -0.11
SHKBP1-217ENST00000598558 PCED1AQ9H1Q7 454 aa14.36□□□□□ -0.11
SHKBP1-217ENST00000598558 DYRK4Q9NR20 520 aa14.36□□□□□ -0.11
SHKBP1-217ENST00000598558 TRMT1Q9NXH9 659 aaKnown RBP14.36□□□□□ -0.11
SHKBP1-217ENST00000598558 DKK3Q9UBP4 350 aa14.36□□□□□ -0.11
SHKBP1-217ENST00000598558 EFR3BQ9Y2G0 817 aa14.36□□□□□ -0.11
SHKBP1-217ENST00000598558 DYNC1LI1Q9Y6G9 523 aaKnown RBP14.36□□□□□ -0.11
SHKBP1-217ENST00000598558 PLXND1Q9Y4D7 1925 aa14.36□□□□□ -0.11
SHKBP1-217ENST00000598558 NUMA1Q14980 2115 aa14.36□□□□□ -0.11
SHKBP1-217ENST00000598558 LRRC72A6NJI9 287 aa14.35□□□□□ -0.11
SHKBP1-217ENST00000598558 MEI4A8MW99 385 aa14.35□□□□□ -0.11
SHKBP1-217ENST00000598558 HTRA2O43464 458 aaPredicted RBP14.35□□□□□ -0.11
SHKBP1-217ENST00000598558 LATO43561 262 aa14.35□□□□□ -0.11
SHKBP1-217ENST00000598558 GDF9O60383 454 aa14.35□□□□□ -0.11
SHKBP1-217ENST00000598558 RNGTTO60942 597 aaKnown RBP14.35□□□□□ -0.11
SHKBP1-217ENST00000598558 MMP2P08253 660 aa14.35□□□□□ -0.11
SHKBP1-217ENST00000598558 NR2C2P49116 596 aa14.35□□□□□ -0.11
SHKBP1-217ENST00000598558 CCR5P51681 352 aa14.35□□□□□ -0.11
SHKBP1-217ENST00000598558 IFI35P80217 286 aaPredicted RBP14.35□□□□□ -0.11
SHKBP1-217ENST00000598558 OTUD4Q01804 1114 aaKnown RBP14.35□□□□□ -0.11
SHKBP1-217ENST00000598558 KLF1Q13351 362 aaPredicted RBP14.35□□□□□ -0.11
SHKBP1-217ENST00000598558 CSRP2Q16527 193 aa14.35□□□□□ -0.11
SHKBP1-217ENST00000598558 ZNF284Q2VY69 593 aa14.35□□□□□ -0.11
SHKBP1-217ENST00000598558 ALG1LQ6GMV1 187 aa14.35□□□□□ -0.11
SHKBP1-217ENST00000598558 TIGD7Q6NT04 549 aaPredicted RBP14.35□□□□□ -0.11
SHKBP1-217ENST00000598558 FBXL19Q6PCT2 694 aa14.35□□□□□ -0.11
SHKBP1-217ENST00000598558 LAYNQ6UX15 382 aa14.35□□□□□ -0.11
SHKBP1-217ENST00000598558 TTC7BQ86TV6 843 aa14.35□□□□□ -0.11
SHKBP1-217ENST00000598558 KIAA2013Q8IYS2 634 aa14.35□□□□□ -0.11
SHKBP1-217ENST00000598558 UBL4BQ8N7F7 174 aa14.35□□□□□ -0.11
SHKBP1-217ENST00000598558 ACTL9Q8TC94 416 aa14.35□□□□□ -0.11
SHKBP1-217ENST00000598558 SNX19Q92543 992 aa14.35□□□□□ -0.11
SHKBP1-217ENST00000598558 ANP32BQ92688 251 aaKnown RBP14.35□□□□□ -0.11
SHKBP1-217ENST00000598558 PPP1R16AQ96I34 528 aa14.35□□□□□ -0.11
SHKBP1-217ENST00000598558 ZNF641Q96N77 438 aaPredicted RBP14.35□□□□□ -0.11
SHKBP1-217ENST00000598558 SMIM14Q96QK8 99 aa14.35□□□□□ -0.11
SHKBP1-217ENST00000598558 TUBGCP5Q96RT8 1024 aa14.35□□□□□ -0.11
SHKBP1-217ENST00000598558 SEMA3CQ99985 751 aa14.35□□□□□ -0.11
SHKBP1-217ENST00000598558 HINFPQ9BQA5 517 aa14.35□□□□□ -0.11
SHKBP1-217ENST00000598558 MIR1-1HGQ9H1L0 117 aa14.35□□□□□ -0.11
SHKBP1-217ENST00000598558 KDM4CQ9H3R0 1056 aa14.35□□□□□ -0.11
SHKBP1-217ENST00000598558 SCUBE2Q9NQ36 999 aa14.35□□□□□ -0.11
SHKBP1-217ENST00000598558 R3HDM2Q9Y2K5 976 aaKnown RBP14.35□□□□□ -0.11
SHKBP1-217ENST00000598558 A0A1W2PPC4 97 aa14.34□□□□□ -0.11
SHKBP1-217ENST00000598558 A0A1W2PQU0 124 aa14.34□□□□□ -0.11
SHKBP1-217ENST00000598558 APOC4-APOC2K7ER74 178 aa14.34□□□□□ -0.11
SHKBP1-217ENST00000598558 AP1G1O43747 822 aa14.34□□□□□ -0.11
SHKBP1-217ENST00000598558 NRDCO43847 1150 aa14.34□□□□□ -0.11
SHKBP1-217ENST00000598558 APOC2P02655 101 aa14.34□□□□□ -0.11
SHKBP1-217ENST00000598558 WNT1P04628 370 aa14.34□□□□□ -0.11
SHKBP1-217ENST00000598558 PDHA1P08559 390 aa14.34□□□□□ -0.11
SHKBP1-217ENST00000598558 PTPN3P26045 913 aa14.34□□□□□ -0.11
SHKBP1-217ENST00000598558 CD68P34810 354 aaPredicted RBP14.34□□□□□ -0.11
SHKBP1-217ENST00000598558 HSPA9P38646 679 aaKnown RBP14.34□□□□□ -0.11
SHKBP1-217ENST00000598558 AP1S1P61966 158 aa14.34□□□□□ -0.11
SHKBP1-217ENST00000598558 BCL2L1Q07817 233 aa14.34□□□□□ -0.11
SHKBP1-217ENST00000598558 ITKQ08881 620 aa14.34□□□□□ -0.11
SHKBP1-217ENST00000598558 NOMO1Q15155 1222 aa14.34□□□□□ -0.11
SHKBP1-217ENST00000598558 UGP2Q16851 508 aa14.34□□□□□ -0.11
SHKBP1-217ENST00000598558 TMEM259Q4ZIN3 620 aa14.34□□□□□ -0.11
SHKBP1-217ENST00000598558 WDR45BQ5MNZ6 344 aa14.34□□□□□ -0.11
SHKBP1-217ENST00000598558 SYCP2LQ5T4T6 812 aa14.34□□□□□ -0.11
SHKBP1-217ENST00000598558 PRPF39Q86UA1 669 aaKnown RBP14.34□□□□□ -0.11
SHKBP1-217ENST00000598558 ZCCHC9Q8N567 271 aaKnown RBP14.34□□□□□ -0.11
SHKBP1-217ENST00000598558 NSMCE1Q8WV22 266 aa14.34□□□□□ -0.11
SHKBP1-217ENST00000598558 P3H4Q92791 437 aa14.34□□□□□ -0.11
SHKBP1-217ENST00000598558 ATP13A3Q9H7F0 1226 aa14.34□□□□□ -0.11
SHKBP1-217ENST00000598558 CAPN10Q9HC96 672 aa14.34□□□□□ -0.11
SHKBP1-217ENST00000598558 PREBQ9HCU5 417 aa14.34□□□□□ -0.11
SHKBP1-217ENST00000598558 TM9SF3Q9HD45 589 aa14.34□□□□□ -0.11
SHKBP1-217ENST00000598558 PCDH12Q9NPG4 1184 aa14.34□□□□□ -0.11
SHKBP1-217ENST00000598558 VPS45Q9NRW7 570 aa14.34□□□□□ -0.11
SHKBP1-217ENST00000598558 SEPT10Q9P0V9 454 aa14.34□□□□□ -0.11
SHKBP1-217ENST00000598558 CA5BQ9Y2D0 317 aa14.34□□□□□ -0.11
SHKBP1-217ENST00000598558 FRYLO94915 3013 aa14.34□□□□□ -0.11
SHKBP1-217ENST00000598558 A0A0U1RQS6 177 aa14.33□□□□□ -0.12
SHKBP1-217ENST00000598558 IGLON5A6NGN9 336 aa14.33□□□□□ -0.12
SHKBP1-217ENST00000598558 PPP1R12AO14974 1030 aaPredicted RBP14.33□□□□□ -0.12
SHKBP1-217ENST00000598558 FZD6O60353 706 aa14.33□□□□□ -0.12
SHKBP1-217ENST00000598558 MMP20O60882 483 aa14.33□□□□□ -0.12
SHKBP1-217ENST00000598558 LRP3O75074 770 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms