RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 FBXO36Q8NEA4 188 aa15.4■□□□□ 0.06
TRIM28-209ENST00000597423 PTCD2Q8WV60 388 aaKnown RBP15.4■□□□□ 0.06
TRIM28-209ENST00000597423 SORCS1Q8WY21 1168 aa15.4■□□□□ 0.06
TRIM28-209ENST00000597423 STAMBPL1Q96FJ0 436 aa15.4■□□□□ 0.06
TRIM28-209ENST00000597423 HEPHQ9BQS7 1158 aa15.4■□□□□ 0.06
TRIM28-209ENST00000597423 TNKS2Q9H2K2 1166 aa15.4■□□□□ 0.06
TRIM28-209ENST00000597423 SEMA4AQ9H3S1 761 aa15.4■□□□□ 0.06
TRIM28-209ENST00000597423 SLC2A4RGQ9NR83 387 aa15.4■□□□□ 0.06
TRIM28-209ENST00000597423 ZC3H7BQ9UGR2 993 aaKnown RBP15.4■□□□□ 0.06
TRIM28-209ENST00000597423 TEX264Q9Y6I9 313 aa15.4■□□□□ 0.06
TRIM28-209ENST00000597423 PIAS3Q9Y6X2 628 aa15.4■□□□□ 0.06
TRIM28-209ENST00000597423 NYNRINQ9P2P1 1898 aaKnown RBP15.4■□□□□ 0.06
TRIM28-209ENST00000597423 EDDM13A0A1B0GTR0 161 aa15.39■□□□□ 0.05
TRIM28-209ENST00000597423 TTC24A2A3L6 582 aaPredicted RBP15.39■□□□□ 0.05
TRIM28-209ENST00000597423 WASH3PC4AMC7 463 aa15.39■□□□□ 0.05
TRIM28-209ENST00000597423 BNIP3LO60238 219 aa15.39■□□□□ 0.05
TRIM28-209ENST00000597423 POLBP06746 335 aa15.39■□□□□ 0.05
TRIM28-209ENST00000597423 DRD1P21728 446 aa15.39■□□□□ 0.05
TRIM28-209ENST00000597423 ADRA1DP25100 572 aa15.39■□□□□ 0.05
TRIM28-209ENST00000597423 MGAT1P26572 445 aa15.39■□□□□ 0.05
TRIM28-209ENST00000597423 CTHP32929 405 aa15.39■□□□□ 0.05
TRIM28-209ENST00000597423 GRIA1P42261 906 aa15.39■□□□□ 0.05
TRIM28-209ENST00000597423 RGRP47804 291 aa15.39■□□□□ 0.05
TRIM28-209ENST00000597423 EPHB1P54762 984 aa15.39■□□□□ 0.05
TRIM28-209ENST00000597423 EIF3BP55884 814 aaKnown RBP15.39■□□□□ 0.05
TRIM28-209ENST00000597423 POLR2LP62875 67 aaKnown RBP15.39■□□□□ 0.05
TRIM28-209ENST00000597423 KYNUQ16719 465 aa15.39■□□□□ 0.05
TRIM28-209ENST00000597423 PTPRNQ16849 979 aa15.39■□□□□ 0.05
TRIM28-209ENST00000597423 PCID2Q5JVF3 399 aa15.39■□□□□ 0.05
TRIM28-209ENST00000597423 SERPINA13PQ6UXR4 307 aa15.39■□□□□ 0.05
TRIM28-209ENST00000597423 C3orf62Q6ZUJ4 267 aa15.39■□□□□ 0.05
TRIM28-209ENST00000597423 ZNF534Q76KX8 674 aa15.39■□□□□ 0.05
TRIM28-209ENST00000597423 DSG4Q86SJ6 1040 aa15.39■□□□□ 0.05
TRIM28-209ENST00000597423 RNF135Q8IUD6 432 aa15.39■□□□□ 0.05
TRIM28-209ENST00000597423 ANKMY2Q8IV38 441 aa15.39■□□□□ 0.05
TRIM28-209ENST00000597423 ADHFE1Q8IWW8 467 aa15.39■□□□□ 0.05
TRIM28-209ENST00000597423 SLC25A41Q8N5S1 370 aa15.39■□□□□ 0.05
TRIM28-209ENST00000597423 PPHLN1Q8NEY8 458 aaKnown RBP15.39■□□□□ 0.05
TRIM28-209ENST00000597423 RMDN1Q96DB5 314 aa15.39■□□□□ 0.05
TRIM28-209ENST00000597423 SIGLEC10Q96LC7 697 aa15.39■□□□□ 0.05
TRIM28-209ENST00000597423 RUFY1Q96T51 708 aa15.39■□□□□ 0.05
TRIM28-209ENST00000597423 APOL2Q9BQE5 337 aa15.39■□□□□ 0.05
TRIM28-209ENST00000597423 OSBPL1AQ9BXW6 950 aa15.39■□□□□ 0.05
TRIM28-209ENST00000597423 CDC42EP4Q9H3Q1 356 aaKnown RBP15.39■□□□□ 0.05
TRIM28-209ENST00000597423 THAP10Q9P2Z0 257 aaPredicted RBP15.39■□□□□ 0.05
TRIM28-209ENST00000597423 EVLQ9UI08 416 aaPredicted RBP15.39■□□□□ 0.05
TRIM28-209ENST00000597423 CHKBQ9Y259 395 aa15.39■□□□□ 0.05
TRIM28-209ENST00000597423 PCDHGC4Q9Y5F7 938 aa15.39■□□□□ 0.05
TRIM28-209ENST00000597423 DENND4AQ7Z401 1863 aa15.39■□□□□ 0.05
TRIM28-209ENST00000597423 DOCK8Q8NF50 2099 aa15.39■□□□□ 0.05
TRIM28-209ENST00000597423 CHD5Q8TDI0 1954 aa15.38■□□□□ 0.05
TRIM28-209ENST00000597423 A0A087WUV0 522 aaPredicted RBP15.38■□□□□ 0.05
TRIM28-209ENST00000597423 TTC34A8MYJ7 566 aa15.38■□□□□ 0.05
TRIM28-209ENST00000597423 MAN2B1O00754 1011 aa15.38■□□□□ 0.05
TRIM28-209ENST00000597423 RIPK2O43353 540 aa15.38■□□□□ 0.05
TRIM28-209ENST00000597423 ZNF821O75541 412 aaPredicted RBP15.38■□□□□ 0.05
TRIM28-209ENST00000597423 ABHD2P08910 425 aa15.38■□□□□ 0.05
TRIM28-209ENST00000597423 HNRNPLP14866 589 aaKnown RBP eCLIP15.38■□□□□ 0.05
TRIM28-209ENST00000597423 PGAM1P18669 254 aa15.38■□□□□ 0.05
TRIM28-209ENST00000597423 CCNHP51946 323 aaPredicted RBP15.38■□□□□ 0.05
TRIM28-209ENST00000597423 IFFO1Q0D2I5 559 aa15.38■□□□□ 0.05
TRIM28-209ENST00000597423 GPS2Q13227 327 aa15.38■□□□□ 0.05
TRIM28-209ENST00000597423 MSS51Q4VC12 460 aa15.38■□□□□ 0.05
TRIM28-209ENST00000597423 SIRPB2Q5JXA9 342 aa15.38■□□□□ 0.05
TRIM28-209ENST00000597423 HP1BP3Q5SSJ5 553 aaPredicted RBP15.38■□□□□ 0.05
TRIM28-209ENST00000597423 DENND5AQ6IQ26 1287 aa15.38■□□□□ 0.05
TRIM28-209ENST00000597423 DPY19L3Q6ZPD9 716 aa15.38■□□□□ 0.05
TRIM28-209ENST00000597423 TRMT11Q7Z4G4 463 aaKnown RBP15.38■□□□□ 0.05
TRIM28-209ENST00000597423 OR2A12Q8NGT7 310 aa15.38■□□□□ 0.05
TRIM28-209ENST00000597423 HCAR2Q8TDS4 363 aa15.38■□□□□ 0.05
TRIM28-209ENST00000597423 FRS2Q8WU20 508 aa15.38■□□□□ 0.05
TRIM28-209ENST00000597423 PDCD6IPQ8WUM4 868 aaKnown RBP15.38■□□□□ 0.05
TRIM28-209ENST00000597423 CHFRQ96EP1 664 aa15.38■□□□□ 0.05
TRIM28-209ENST00000597423 C9orf72Q96LT7 481 aa15.38■□□□□ 0.05
TRIM28-209ENST00000597423 TDRD1Q9BXT4 1180 aaKnown RBP15.38■□□□□ 0.05
TRIM28-209ENST00000597423 SUV39H2Q9H5I1 410 aa15.38■□□□□ 0.05
TRIM28-209ENST00000597423 VPS37BQ9H9H4 285 aa15.38■□□□□ 0.05
TRIM28-209ENST00000597423 NINJ2Q9NZG7 142 aa15.38■□□□□ 0.05
TRIM28-209ENST00000597423 HACD3Q9P035 362 aa15.38■□□□□ 0.05
TRIM28-209ENST00000597423 SHROOM3Q8TF72 1996 aa15.37■□□□□ 0.05
TRIM28-209ENST00000597423 HEATR9A2RTY3 570 aa15.37■□□□□ 0.05
TRIM28-209ENST00000597423 ANKRD66B4E2M5 251 aa15.37■□□□□ 0.05
TRIM28-209ENST00000597423 PGLSO95336 258 aa15.37■□□□□ 0.05
TRIM28-209ENST00000597423 ACSL3O95573 720 aa15.37■□□□□ 0.05
TRIM28-209ENST00000597423 CRTAMO95727 393 aa15.37■□□□□ 0.05
TRIM28-209ENST00000597423 PRNPP04156 253 aa15.37■□□□□ 0.05
TRIM28-209ENST00000597423 ASGR2P07307 311 aa15.37■□□□□ 0.05
TRIM28-209ENST00000597423 IL9P15248 144 aa15.37■□□□□ 0.05
TRIM28-209ENST00000597423 TPH1P17752 444 aa15.37■□□□□ 0.05
TRIM28-209ENST00000597423 SOX9P48436 509 aa15.37■□□□□ 0.05
TRIM28-209ENST00000597423 PDE1BQ01064 536 aa15.37■□□□□ 0.05
TRIM28-209ENST00000597423 TFF2Q03403 129 aa15.37■□□□□ 0.05
TRIM28-209ENST00000597423 SLC29A2Q14542 456 aa15.37■□□□□ 0.05
TRIM28-209ENST00000597423 ZNF234Q14588 700 aa15.37■□□□□ 0.05
TRIM28-209ENST00000597423 HNRNPA1L2Q32P51 320 aaKnown RBP15.37■□□□□ 0.05
TRIM28-209ENST00000597423 FBXO43Q4G163 708 aa15.37■□□□□ 0.05
TRIM28-209ENST00000597423 SLC44A4Q53GD3 710 aa15.37■□□□□ 0.05
TRIM28-209ENST00000597423 SPANXN3Q5MJ09 141 aa15.37■□□□□ 0.05
TRIM28-209ENST00000597423 CERCAMQ5T4B2 595 aa15.37■□□□□ 0.05
TRIM28-209ENST00000597423 PKN3Q6P5Z2 889 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms