RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 PCK1P35558 622 aa13.21□□□□□ -0.29
LIG1-212ENST00000596549 SLC25A11Q02978 314 aaKnown RBP13.21□□□□□ -0.29
LIG1-212ENST00000596549 SMAD1Q15797 465 aaKnown RBP13.21□□□□□ -0.29
LIG1-212ENST00000596549 DPYSL2Q16555 572 aa13.21□□□□□ -0.29
LIG1-212ENST00000596549 PROX2Q3B8N5 592 aa13.21□□□□□ -0.29
LIG1-212ENST00000596549 Q6ZSR6 202 aa13.21□□□□□ -0.29
LIG1-212ENST00000596549 ZSCAN30Q86W11 494 aa13.21□□□□□ -0.29
LIG1-212ENST00000596549 PSTKQ8IV42 348 aaKnown RBP13.21□□□□□ -0.29
LIG1-212ENST00000596549 SLC25A45Q8N413 288 aa13.21□□□□□ -0.29
LIG1-212ENST00000596549 DENND6BQ8NEG7 585 aa13.21□□□□□ -0.29
LIG1-212ENST00000596549 CPLX3Q8WVH0 158 aa13.21□□□□□ -0.29
LIG1-212ENST00000596549 NSMCE3Q96MG7 304 aa13.21□□□□□ -0.29
LIG1-212ENST00000596549 LENG8Q96PV6 779 aaPredicted RBP13.21□□□□□ -0.29
LIG1-212ENST00000596549 CPEB1Q9BZB8 566 aaKnown RBP13.21□□□□□ -0.29
LIG1-212ENST00000596549 XPO4Q9C0E2 1151 aaKnown RBP13.21□□□□□ -0.29
LIG1-212ENST00000596549 MRPL47Q9HD33 250 aaKnown RBP13.21□□□□□ -0.29
LIG1-212ENST00000596549 KLHL11Q9NVR0 708 aa13.21□□□□□ -0.29
LIG1-212ENST00000596549 DKK3Q9UBP4 350 aa13.21□□□□□ -0.29
LIG1-212ENST00000596549 ZZEF1O43149 2961 aa13.21□□□□□ -0.29
LIG1-212ENST00000596549 SRRM3A6NNA2 597 aaPredicted RBP13.2□□□□□ -0.3
LIG1-212ENST00000596549 TAF4O00268 1085 aa13.2□□□□□ -0.3
LIG1-212ENST00000596549 TRIM38O00635 465 aa13.2□□□□□ -0.3
LIG1-212ENST00000596549 MUSKO15146 869 aa13.2□□□□□ -0.3
LIG1-212ENST00000596549 DGKAP23743 735 aa13.2□□□□□ -0.3
LIG1-212ENST00000596549 CASP14P31944 242 aa13.2□□□□□ -0.3
LIG1-212ENST00000596549 PFN3P60673 137 aa13.2□□□□□ -0.3
LIG1-212ENST00000596549 CAMK2BQ13554 666 aa13.2□□□□□ -0.3
LIG1-212ENST00000596549 FZD2Q14332 565 aa13.2□□□□□ -0.3
LIG1-212ENST00000596549 ZNF542PQ5EBM4 170 aa13.2□□□□□ -0.3
LIG1-212ENST00000596549 PROSER1Q86XN7 944 aa13.2□□□□□ -0.3
LIG1-212ENST00000596549 CPNE8Q86YQ8 564 aa13.2□□□□□ -0.3
LIG1-212ENST00000596549 NIPA2Q8N8Q9 360 aa13.2□□□□□ -0.3
LIG1-212ENST00000596549 TP53I13Q8NBR0 393 aaPredicted RBP13.2□□□□□ -0.3
LIG1-212ENST00000596549 TSEN2Q8NCE0 465 aaKnown RBP13.2□□□□□ -0.3
LIG1-212ENST00000596549 MDM1Q8TC05 714 aa13.2□□□□□ -0.3
LIG1-212ENST00000596549 ASB12Q8WXK4 309 aa13.2□□□□□ -0.3
LIG1-212ENST00000596549 FEM1CQ96JP0 617 aa13.2□□□□□ -0.3
LIG1-212ENST00000596549 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.2□□□□□ -0.3
LIG1-212ENST00000596549 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.2□□□□□ -0.3
LIG1-212ENST00000596549 ETNK2Q9NVF9 386 aa13.2□□□□□ -0.3
LIG1-212ENST00000596549 KLF15Q9UIH9 416 aa13.2□□□□□ -0.3
LIG1-212ENST00000596549 ANAPC7Q9UJX3 599 aa13.2□□□□□ -0.3
LIG1-212ENST00000596549 PNMA8BQ9ULN7 279 aaPredicted RBP13.2□□□□□ -0.3
LIG1-212ENST00000596549 PCDHGA1Q9Y5H4 931 aa13.2□□□□□ -0.3
LIG1-212ENST00000596549 HS3ST3A1Q9Y663 406 aa13.2□□□□□ -0.3
LIG1-212ENST00000596549 CFAP47Q6ZTR5 3102 aa13.19□□□□□ -0.3
LIG1-212ENST00000596549 ADAMTS20P59510 1910 aa13.19□□□□□ -0.3
LIG1-212ENST00000596549 SPTY2D1-AS1A0A0U1RR47 76 aa13.19□□□□□ -0.3
LIG1-212ENST00000596549 ARHGAP42A6NI28 874 aa13.19□□□□□ -0.3
LIG1-212ENST00000596549 DFFAO00273 331 aa13.19□□□□□ -0.3
LIG1-212ENST00000596549 NEMP1O14524 444 aa13.19□□□□□ -0.3
LIG1-212ENST00000596549 SIGLEC6O43699 453 aa13.19□□□□□ -0.3
LIG1-212ENST00000596549 BUB1BO60566 1050 aaPredicted RBP13.19□□□□□ -0.3
LIG1-212ENST00000596549 MMP20O60882 483 aa13.19□□□□□ -0.3
LIG1-212ENST00000596549 CYP1A2P05177 515 aa13.19□□□□□ -0.3
LIG1-212ENST00000596549 RARAP10276 462 aa13.19□□□□□ -0.3
LIG1-212ENST00000596549 TIMP2P16035 220 aa13.19□□□□□ -0.3
LIG1-212ENST00000596549 HCAR3P49019 387 aa13.19□□□□□ -0.3
LIG1-212ENST00000596549 RAD51Q06609 339 aa13.19□□□□□ -0.3
LIG1-212ENST00000596549 PDE1CQ14123 709 aaPredicted RBP13.19□□□□□ -0.3
LIG1-212ENST00000596549 ACAP1Q15027 740 aa13.19□□□□□ -0.3
LIG1-212ENST00000596549 PARGQ86W56 976 aa13.19□□□□□ -0.3
LIG1-212ENST00000596549 GALNT15Q8N3T1 639 aa13.19□□□□□ -0.3
LIG1-212ENST00000596549 OR4C6Q8NH72 309 aa13.19□□□□□ -0.3
LIG1-212ENST00000596549 FAM174AQ8TBP5 190 aa13.19□□□□□ -0.3
LIG1-212ENST00000596549 HSPH1Q92598 858 aa13.19□□□□□ -0.3
LIG1-212ENST00000596549 CENPTQ96BT3 561 aa13.19□□□□□ -0.3
LIG1-212ENST00000596549 IQCDQ96DY2 449 aa13.19□□□□□ -0.3
LIG1-212ENST00000596549 NCAPGQ9BPX3 1015 aa13.19□□□□□ -0.3
LIG1-212ENST00000596549 WRAP53Q9BUR4 548 aaKnown RBP13.19□□□□□ -0.3
LIG1-212ENST00000596549 NUP85Q9BW27 656 aa13.19□□□□□ -0.3
LIG1-212ENST00000596549 ZWILCHQ9H900 591 aa13.19□□□□□ -0.3
LIG1-212ENST00000596549 SP110Q9HB58 689 aa13.19□□□□□ -0.3
LIG1-212ENST00000596549 COQ6Q9Y2Z9 468 aa13.19□□□□□ -0.3
LIG1-212ENST00000596549 BZW2Q9Y6E2 419 aaKnown RBP13.19□□□□□ -0.3
LIG1-212ENST00000596549 LY6G6EA0A0G2JKS1 128 aa13.18□□□□□ -0.3
LIG1-212ENST00000596549 H3BRJ5 948 aa13.18□□□□□ -0.3
LIG1-212ENST00000596549 FPGTO14772 594 aa13.18□□□□□ -0.3
LIG1-212ENST00000596549 FFAR2O15552 330 aa13.18□□□□□ -0.3
LIG1-212ENST00000596549 DAPK3O43293 454 aa13.18□□□□□ -0.3
LIG1-212ENST00000596549 PEX11BO96011 259 aa13.18□□□□□ -0.3
LIG1-212ENST00000596549 PRKCGP05129 697 aa13.18□□□□□ -0.3
LIG1-212ENST00000596549 NME1P15531 152 aaKnown RBP13.18□□□□□ -0.3
LIG1-212ENST00000596549 PTMSP20962 102 aa13.18□□□□□ -0.3
LIG1-212ENST00000596549 AMPD1P23109 780 aa13.18□□□□□ -0.3
LIG1-212ENST00000596549 ACP1P24666 158 aa13.18□□□□□ -0.3
LIG1-212ENST00000596549 MMP12P39900 470 aa13.18□□□□□ -0.3
LIG1-212ENST00000596549 RABIFP47224 123 aa13.18□□□□□ -0.3
LIG1-212ENST00000596549 ZNF135P52742 658 aaPredicted RBP13.18□□□□□ -0.3
LIG1-212ENST00000596549 IL10RBQ08334 325 aa13.18□□□□□ -0.3
LIG1-212ENST00000596549 RALGDSQ12967 914 aa13.18□□□□□ -0.3
LIG1-212ENST00000596549 EIF2B5Q13144 721 aaKnown RBP13.18□□□□□ -0.3
LIG1-212ENST00000596549 PIGHQ14442 188 aaPredicted RBP13.18□□□□□ -0.3
LIG1-212ENST00000596549 IRF4Q15306 451 aa13.18□□□□□ -0.3
LIG1-212ENST00000596549 TMEM52BQ4KMG9 183 aa13.18□□□□□ -0.3
LIG1-212ENST00000596549 ALKBH5Q6P6C2 394 aaKnown RBP13.18□□□□□ -0.3
LIG1-212ENST00000596549 POLNQ7Z5Q5 900 aa13.18□□□□□ -0.3
LIG1-212ENST00000596549 TTC7BQ86TV6 843 aa13.18□□□□□ -0.3
LIG1-212ENST00000596549 VPS36Q86VN1 386 aa13.18□□□□□ -0.3
LIG1-212ENST00000596549 CAMK1DQ8IU85 385 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms