RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 LRRC57Q8N9N7 239 aa15.2■□□□□ 0.02
UPF1-202ENST00000594243 UBE2Q2Q8WVN8 375 aa15.2■□□□□ 0.02
UPF1-202ENST00000594243 SKA1Q96BD8 255 aa15.2■□□□□ 0.02
UPF1-202ENST00000594243 NUDCD1Q96RS6 583 aa15.2■□□□□ 0.02
UPF1-202ENST00000594243 EDEM2Q9BV94 578 aa15.2■□□□□ 0.02
UPF1-202ENST00000594243 ZDHHC5Q9C0B5 715 aa15.2■□□□□ 0.02
UPF1-202ENST00000594243 BRD8Q9H0E9 1235 aa15.2■□□□□ 0.02
UPF1-202ENST00000594243 TM9SF3Q9HD45 589 aa15.2■□□□□ 0.02
UPF1-202ENST00000594243 AMACRQ9UHK6 382 aa15.2■□□□□ 0.02
UPF1-202ENST00000594243 FADS3Q9Y5Q0 445 aa15.2■□□□□ 0.02
UPF1-202ENST00000594243 DMXL1Q9Y485 3027 aa15.19■□□□□ 0.02
UPF1-202ENST00000594243 GPR179Q6PRD1 2367 aa15.19■□□□□ 0.02
UPF1-202ENST00000594243 A0A1W2PQ67 120 aa15.19■□□□□ 0.02
UPF1-202ENST00000594243 A0A1W2PQU0 124 aa15.19■□□□□ 0.02
UPF1-202ENST00000594243 GRID2IPA4D2P6 1211 aa15.19■□□□□ 0.02
UPF1-202ENST00000594243 NEMP1O14524 444 aa15.19■□□□□ 0.02
UPF1-202ENST00000594243 ARHGAP33O14559 1287 aa15.19■□□□□ 0.02
UPF1-202ENST00000594243 PPP1R12AO14974 1030 aaPredicted RBP15.19■□□□□ 0.02
UPF1-202ENST00000594243 MUSKO15146 869 aa15.19■□□□□ 0.02
UPF1-202ENST00000594243 GDF9O60383 454 aa15.19■□□□□ 0.02
UPF1-202ENST00000594243 CST8O60676 142 aa15.19■□□□□ 0.02
UPF1-202ENST00000594243 NEBLO76041 1014 aa15.19■□□□□ 0.02
UPF1-202ENST00000594243 MAP3K6O95382 1288 aa15.19■□□□□ 0.02
UPF1-202ENST00000594243 PIGNO95427 931 aa15.19■□□□□ 0.02
UPF1-202ENST00000594243 CCDC175P0C221 793 aa15.19■□□□□ 0.02
UPF1-202ENST00000594243 KRT10P13645 584 aa15.19■□□□□ 0.02
UPF1-202ENST00000594243 CCNB1P14635 433 aa15.19■□□□□ 0.02
UPF1-202ENST00000594243 ENGP17813 658 aa15.19■□□□□ 0.02
UPF1-202ENST00000594243 TGM2P21980 687 aa15.19■□□□□ 0.02
UPF1-202ENST00000594243 XPAP23025 273 aaPredicted RBP15.19■□□□□ 0.02
UPF1-202ENST00000594243 CES1P23141 567 aa15.19■□□□□ 0.02
UPF1-202ENST00000594243 MAT2AP31153 395 aaKnown RBP15.19■□□□□ 0.02
UPF1-202ENST00000594243 RWDD2BP57060 319 aa15.19■□□□□ 0.02
UPF1-202ENST00000594243 PPP2CBP62714 309 aa15.19■□□□□ 0.02
UPF1-202ENST00000594243 POLR2LP62875 67 aaKnown RBP15.19■□□□□ 0.02
UPF1-202ENST00000594243 RPS21P63220 83 aaKnown RBP15.19■□□□□ 0.02
UPF1-202ENST00000594243 PPP2CAP67775 309 aa15.19■□□□□ 0.02
UPF1-202ENST00000594243 ITKQ08881 620 aa15.19■□□□□ 0.02
UPF1-202ENST00000594243 PDK1Q15118 436 aa15.19■□□□□ 0.02
UPF1-202ENST00000594243 KAZNQ674X7 775 aa15.19■□□□□ 0.02
UPF1-202ENST00000594243 KIAA1161Q6NSJ0 714 aa15.19■□□□□ 0.02
UPF1-202ENST00000594243 BRAT1Q6PJG6 821 aa15.19■□□□□ 0.02
UPF1-202ENST00000594243 PEX26Q7Z412 305 aa15.19■□□□□ 0.02
UPF1-202ENST00000594243 NT5DC3Q86UY8 548 aa15.19■□□□□ 0.02
UPF1-202ENST00000594243 HORMAD1Q86X24 394 aa15.19■□□□□ 0.02
UPF1-202ENST00000594243 CAMK1DQ8IU85 385 aa15.19■□□□□ 0.02
UPF1-202ENST00000594243 CCDC13Q8IYE1 715 aa15.19■□□□□ 0.02
UPF1-202ENST00000594243 MAML1Q92585 1016 aa15.19■□□□□ 0.02
UPF1-202ENST00000594243 KRT35Q92764 455 aa15.19■□□□□ 0.02
UPF1-202ENST00000594243 SERAC1Q96JX3 654 aa15.19■□□□□ 0.02
UPF1-202ENST00000594243 MGME1Q9BQP7 344 aa15.19■□□□□ 0.02
UPF1-202ENST00000594243 ORAI3Q9BRQ5 295 aa15.19■□□□□ 0.02
UPF1-202ENST00000594243 EBF2Q9HAK2 575 aa15.19■□□□□ 0.02
UPF1-202ENST00000594243 TMEM9BQ9NQ34 198 aa15.19■□□□□ 0.02
UPF1-202ENST00000594243 SCUBE2Q9NQ36 999 aa15.19■□□□□ 0.02
UPF1-202ENST00000594243 RXFP3Q9NSD7 469 aa15.19■□□□□ 0.02
UPF1-202ENST00000594243 TRIM10Q9UDY6 481 aa15.19■□□□□ 0.02
UPF1-202ENST00000594243 CDV3Q9UKY7 258 aaKnown RBP15.19■□□□□ 0.02
UPF1-202ENST00000594243 RALGAPA1Q6GYQ0 2036 aa15.18■□□□□ 0.02
UPF1-202ENST00000594243 NUP205Q92621 2012 aa15.18■□□□□ 0.02
UPF1-202ENST00000594243 A0A0U1RQJ8 604 aa15.18■□□□□ 0.02
UPF1-202ENST00000594243 TSPAN11A1L157 253 aa15.18■□□□□ 0.02
UPF1-202ENST00000594243 MIF4GDA9UHW6 222 aaKnown RBP15.18■□□□□ 0.02
UPF1-202ENST00000594243 TIMP2P16035 220 aa15.18■□□□□ 0.02
UPF1-202ENST00000594243 CR2P20023 1033 aa15.18■□□□□ 0.02
UPF1-202ENST00000594243 GRIA4P48058 902 aa15.18■□□□□ 0.02
UPF1-202ENST00000594243 DYNLT1P63172 113 aa15.18■□□□□ 0.02
UPF1-202ENST00000594243 PPIDQ08752 370 aaKnown RBP15.18■□□□□ 0.02
UPF1-202ENST00000594243 ELP6Q0PNE2 266 aa15.18■□□□□ 0.02
UPF1-202ENST00000594243 STAT4Q14765 748 aa15.18■□□□□ 0.02
UPF1-202ENST00000594243 PPP2R5EQ16537 467 aa15.18■□□□□ 0.02
UPF1-202ENST00000594243 UGP2Q16851 508 aa15.18■□□□□ 0.02
UPF1-202ENST00000594243 RSPO4Q2I0M5 234 aaPredicted RBP15.18■□□□□ 0.02
UPF1-202ENST00000594243 SLC45A4Q5BKX6 768 aa15.18■□□□□ 0.02
UPF1-202ENST00000594243 IL27RAQ6UWB1 636 aa15.18■□□□□ 0.02
UPF1-202ENST00000594243 ADAT2Q7Z6V5 191 aaKnown RBP15.18■□□□□ 0.02
UPF1-202ENST00000594243 PGBD5Q8N414 524 aa15.18■□□□□ 0.02
UPF1-202ENST00000594243 UBL4BQ8N7F7 174 aa15.18■□□□□ 0.02
UPF1-202ENST00000594243 PAF1Q8N7H5 531 aa15.18■□□□□ 0.02
UPF1-202ENST00000594243 P3H4Q92791 437 aa15.18■□□□□ 0.02
UPF1-202ENST00000594243 POLR1EQ9GZS1 481 aaKnown RBP15.18■□□□□ 0.02
UPF1-202ENST00000594243 NT5MQ9NPB1 228 aa15.18■□□□□ 0.02
UPF1-202ENST00000594243 RBM22Q9NW64 420 aaKnown RBP eCLIP15.18■□□□□ 0.02
UPF1-202ENST00000594243 GUCA1BQ9UMX6 200 aa15.18■□□□□ 0.02
UPF1-202ENST00000594243 EFR3BQ9Y2G0 817 aa15.18■□□□□ 0.02
UPF1-202ENST00000594243 SPAG17Q6Q759 2223 aa15.18■□□□□ 0.02
UPF1-202ENST00000594243 hCG_1818297A0A087WSY0 165 aa15.17■□□□□ 0.02
UPF1-202ENST00000594243 PRAMEF26H0Y7S4 382 aa15.17■□□□□ 0.02
UPF1-202ENST00000594243 SOCS5O75159 536 aa15.17■□□□□ 0.02
UPF1-202ENST00000594243 CD38P28907 300 aa15.17■□□□□ 0.02
UPF1-202ENST00000594243 ABL2P42684 1182 aa15.17■□□□□ 0.02
UPF1-202ENST00000594243 MARCKSL1P49006 195 aa15.17■□□□□ 0.02
UPF1-202ENST00000594243 CSNK1EP49674 416 aaKnown RBP15.17■□□□□ 0.02
UPF1-202ENST00000594243 PEX5P50542 639 aa15.17■□□□□ 0.02
UPF1-202ENST00000594243 MAXP61244 160 aa15.17■□□□□ 0.02
UPF1-202ENST00000594243 CCZ1BP86790 482 aa15.17■□□□□ 0.02
UPF1-202ENST00000594243 CCZ1P86791 482 aaPredicted RBP15.17■□□□□ 0.02
UPF1-202ENST00000594243 AP1B1Q10567 949 aa15.17■□□□□ 0.02
UPF1-202ENST00000594243 STPG1Q5TH74 334 aa15.17■□□□□ 0.02
UPF1-202ENST00000594243 NAPEPLDQ6IQ20 393 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms