RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 EFL1Q7Z2Z2 1120 aaKnown RBP24.23■■□□□ 1.47
LSM4-202ENST00000593564 ZNF354CQ86Y25 554 aa24.23■■□□□ 1.47
LSM4-202ENST00000593564 C1QTNF7Q9BXJ2 289 aa24.23■■□□□ 1.47
LSM4-202ENST00000593564 DKK3Q9UBP4 350 aa24.23■■□□□ 1.47
LSM4-202ENST00000593564 APOBEC3BQ9UH17 382 aaKnown RBP24.23■■□□□ 1.47
LSM4-202ENST00000593564 SHROOM3Q8TF72 1996 aa24.23■■□□□ 1.47
LSM4-202ENST00000593564 MGAQ8IWI9 3026 aa24.22■■□□□ 1.47
LSM4-202ENST00000593564 CPED1A4D0V7 1026 aa24.22■■□□□ 1.47
LSM4-202ENST00000593564 TOR1BO14657 336 aa24.22■■□□□ 1.47
LSM4-202ENST00000593564 TM7SF2O76062 418 aa24.22■■□□□ 1.47
LSM4-202ENST00000593564 IGSF6O95976 241 aa24.22■■□□□ 1.47
LSM4-202ENST00000593564 PRB1P04280 392 aa24.22■■□□□ 1.47
LSM4-202ENST00000593564 TGM2P21980 687 aa24.22■■□□□ 1.47
LSM4-202ENST00000593564 EPHB2P29323 1055 aa24.22■■□□□ 1.47
LSM4-202ENST00000593564 NR0B2Q15466 257 aa24.22■■□□□ 1.47
LSM4-202ENST00000593564 EFHC2Q5JST6 749 aa24.22■■□□□ 1.47
LSM4-202ENST00000593564 LRRC73Q5JTD7 316 aa24.22■■□□□ 1.47
LSM4-202ENST00000593564 VPS36Q86VN1 386 aa24.22■■□□□ 1.47
LSM4-202ENST00000593564 PHACTR4Q8IZ21 702 aa24.22■■□□□ 1.47
LSM4-202ENST00000593564 RBFAQ8N0V3 343 aa24.22■■□□□ 1.47
LSM4-202ENST00000593564 PYROXD2Q8N2H3 581 aa24.22■■□□□ 1.47
LSM4-202ENST00000593564 TPCN2Q8NHX9 752 aa24.22■■□□□ 1.47
LSM4-202ENST00000593564 CXorf40AQ8TE69 158 aa24.22■■□□□ 1.47
LSM4-202ENST00000593564 GRAMD1AQ96CP6 724 aa24.22■■□□□ 1.47
LSM4-202ENST00000593564 BOCQ9BWV1 1114 aa24.22■■□□□ 1.47
LSM4-202ENST00000593564 TCEAL2Q9H3H9 227 aaPredicted RBP24.22■■□□□ 1.47
LSM4-202ENST00000593564 SIGLEC16A6NMB1 481 aa24.21■■□□□ 1.47
LSM4-202ENST00000593564 MMP20O60882 483 aa24.21■■□□□ 1.47
LSM4-202ENST00000593564 YBEYP58557 167 aaPredicted RBP24.21■■□□□ 1.47
LSM4-202ENST00000593564 RHOAP61586 193 aa24.21■■□□□ 1.47
LSM4-202ENST00000593564 C19orf57Q0VDD7 668 aa24.21■■□□□ 1.47
LSM4-202ENST00000593564 PRRT3Q5FWE3 981 aa24.21■■□□□ 1.47
LSM4-202ENST00000593564 MON1BQ7L1V2 547 aa24.21■■□□□ 1.47
LSM4-202ENST00000593564 KLC2Q9H0B6 622 aa24.21■■□□□ 1.47
LSM4-202ENST00000593564 ASCL3Q9NQ33 180 aa24.21■■□□□ 1.47
LSM4-202ENST00000593564 PNMA8BQ9ULN7 279 aaPredicted RBP24.21■■□□□ 1.47
LSM4-202ENST00000593564 TCRBV5S1A1TA0A578 114 aa24.2■■□□□ 1.46
LSM4-202ENST00000593564 WASH4PA8MWX3 477 aa24.2■■□□□ 1.46
LSM4-202ENST00000593564 LMO7DNF2Z398 122 aa24.2■■□□□ 1.46
LSM4-202ENST00000593564 CCP110O43303 1012 aa24.2■■□□□ 1.46
LSM4-202ENST00000593564 GCATO75600 419 aa24.2■■□□□ 1.46
LSM4-202ENST00000593564 C1QL1O75973 258 aa24.2■■□□□ 1.46
LSM4-202ENST00000593564 TIMP2P16035 220 aa24.2■■□□□ 1.46
LSM4-202ENST00000593564 RPIAP49247 311 aa24.2■■□□□ 1.46
LSM4-202ENST00000593564 ZNF143P52747 638 aaPredicted RBP24.2■■□□□ 1.46
LSM4-202ENST00000593564 CXADRP78310 365 aa24.2■■□□□ 1.46
LSM4-202ENST00000593564 SERINC3Q13530 473 aa24.2■■□□□ 1.46
LSM4-202ENST00000593564 SYCP1Q15431 976 aa24.2■■□□□ 1.46
LSM4-202ENST00000593564 PARP15Q460N3 678 aa24.2■■□□□ 1.46
LSM4-202ENST00000593564 C6orf132Q5T0Z8 1188 aa24.2■■□□□ 1.46
LSM4-202ENST00000593564 IGF2-ASQ6U949 168 aa24.2■■□□□ 1.46
LSM4-202ENST00000593564 MACC1Q6ZN28 852 aa24.2■■□□□ 1.46
LSM4-202ENST00000593564 TP53I13Q8NBR0 393 aaPredicted RBP24.2■■□□□ 1.46
LSM4-202ENST00000593564 GLMNQ92990 594 aa24.2■■□□□ 1.46
LSM4-202ENST00000593564 HMCESQ96FZ2 354 aa24.2■■□□□ 1.46
LSM4-202ENST00000593564 NAF1Q96HR8 494 aaKnown RBP24.2■■□□□ 1.46
LSM4-202ENST00000593564 EPAS1Q99814 870 aa24.2■■□□□ 1.46
LSM4-202ENST00000593564 LRRC61Q9BV99 259 aa24.2■■□□□ 1.46
LSM4-202ENST00000593564 CPEB1Q9BZB8 566 aaKnown RBP24.2■■□□□ 1.46
LSM4-202ENST00000593564 SLC13A1Q9BZW2 595 aa24.2■■□□□ 1.46
LSM4-202ENST00000593564 THSD1Q9NS62 852 aa24.2■■□□□ 1.46
LSM4-202ENST00000593564 FANCLQ9NW38 375 aa24.2■■□□□ 1.46
LSM4-202ENST00000593564 RASA4BC9J798 803 aa24.19■■□□□ 1.46
LSM4-202ENST00000593564 RASA4O43374 803 aa24.19■■□□□ 1.46
LSM4-202ENST00000593564 TCEA3O75764 348 aa24.19■■□□□ 1.46
LSM4-202ENST00000593564 ITIH2P19823 946 aa24.19■■□□□ 1.46
LSM4-202ENST00000593564 SUOXP51687 545 aa24.19■■□□□ 1.46
LSM4-202ENST00000593564 AIF1P55008 147 aa24.19■■□□□ 1.46
LSM4-202ENST00000593564 UCNP55089 124 aa24.19■■□□□ 1.46
LSM4-202ENST00000593564 ADKP55263 362 aaKnown RBP24.19■■□□□ 1.46
LSM4-202ENST00000593564 C1QBPQ07021 282 aaKnown RBP24.19■■□□□ 1.46
LSM4-202ENST00000593564 C1orf61Q13536 156 aa24.19■■□□□ 1.46
LSM4-202ENST00000593564 DNAJC24Q6P3W2 148 aa24.19■■□□□ 1.46
LSM4-202ENST00000593564 SCYL2Q6P3W7 929 aa24.19■■□□□ 1.46
LSM4-202ENST00000593564 RBM44Q6ZP01 1051 aaKnown RBP24.19■■□□□ 1.46
LSM4-202ENST00000593564 UMODL1-AS1Q8N2C9 162 aa24.19■■□□□ 1.46
LSM4-202ENST00000593564 NETO2Q8NC67 525 aa24.19■■□□□ 1.46
LSM4-202ENST00000593564 NAT6Q93015 286 aa24.19■■□□□ 1.46
LSM4-202ENST00000593564 CATSPERBQ9H7T0 1116 aa24.19■■□□□ 1.46
LSM4-202ENST00000593564 MBNL1Q9NR56 388 aaKnown RBP24.19■■□□□ 1.46
LSM4-202ENST00000593564 FZD10Q9ULW2 581 aa24.19■■□□□ 1.46
LSM4-202ENST00000593564 CFAP46Q8IYW2 2715 aa24.18■■□□□ 1.46
LSM4-202ENST00000593564 ANXA6P08133 673 aa24.18■■□□□ 1.46
LSM4-202ENST00000593564 EIF4A3P38919 411 aaKnown RBP24.18■■□□□ 1.46
LSM4-202ENST00000593564 COPB1P53618 953 aaKnown RBP24.18■■□□□ 1.46
LSM4-202ENST00000593564 KLHL40Q2TBA0 621 aa24.18■■□□□ 1.46
LSM4-202ENST00000593564 TMEM52BQ4KMG9 183 aa24.18■■□□□ 1.46
LSM4-202ENST00000593564 BROXQ5VW32 411 aa24.18■■□□□ 1.46
LSM4-202ENST00000593564 SLC35F3Q8IY50 421 aa24.18■■□□□ 1.46
LSM4-202ENST00000593564 NEK11Q8NG66 645 aa24.18■■□□□ 1.46
LSM4-202ENST00000593564 HCAR2Q8TDS4 363 aa24.18■■□□□ 1.46
LSM4-202ENST00000593564 KCNE4Q8WWG9 221 aa24.18■■□□□ 1.46
LSM4-202ENST00000593564 ATXN7L3BQ96GX2 97 aa24.18■■□□□ 1.46
LSM4-202ENST00000593564 WRAP53Q9BUR4 548 aaKnown RBP24.18■■□□□ 1.46
LSM4-202ENST00000593564 CLPBQ9H078 707 aa24.18■■□□□ 1.46
LSM4-202ENST00000593564 SEPT11Q9NVA2 429 aaKnown RBP24.18■■□□□ 1.46
LSM4-202ENST00000593564 LHX3Q9UBR4 397 aa24.18■■□□□ 1.46
LSM4-202ENST00000593564 SATB2Q9UPW6 733 aa24.18■■□□□ 1.46
LSM4-202ENST00000593564 ENTPD2Q9Y5L3 495 aa24.18■■□□□ 1.46
LSM4-202ENST00000593564 COL27A1Q8IZC6 1860 aaPredicted RBP24.17■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms