RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 WNT7BP56706 349 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 EOGTQ5NDL2 527 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 RTL10Q7L3V2 364 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 SUGP1Q8IWZ8 645 aaKnown RBP9.92□□□□□ -0.82
LIG3-216ENST00000593099 LINC01465Q8N7H1 131 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 PCDH19Q8TAB3 1148 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 ZIM3Q96PE6 472 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 COPS8Q99627 209 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 SLC39A8Q9C0K1 460 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 GGA2Q9UJY4 613 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 TCHHQ07283 1943 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 H0YC42 278 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 GOLGA8TH3BQL2 631 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 INSIG1O15503 277 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 DCTN3O75935 186 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 TSPAN9O75954 239 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 ZWINTO95229 277 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 CRABP2P29373 138 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 SNCBQ16143 134 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 CA9Q16790 459 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 SGO1Q5FBB7 561 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 VITQ6UXI7 678 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 MAGEC3Q8TD91 643 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 HEXDCQ8WVB3 486 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 NKD2Q969F2 451 aaPredicted RBP9.92□□□□□ -0.82
LIG3-216ENST00000593099 RAB3IPQ96QF0 476 aaPredicted RBP9.92□□□□□ -0.82
LIG3-216ENST00000593099 GPSM3Q9Y4H4 160 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 HEPACAM2A8MVW5 462 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 CLASP2O75122 1294 aaKnown RBP9.92□□□□□ -0.82
LIG3-216ENST00000593099 SLC25A14O95258 325 aaPredicted RBP9.92□□□□□ -0.82
LIG3-216ENST00000593099 ESRRAP11474 423 aaPredicted RBP9.92□□□□□ -0.82
LIG3-216ENST00000593099 DGKEP52429 567 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 RING1Q06587 406 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 OSCP1Q8WVF1 389 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 YIPF3Q9GZM5 350 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 SEMA4AQ9H3S1 761 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 RIC8BQ9NVN3 520 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 KCTD5Q9NXV2 234 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 ZNHIT2Q9UHR6 403 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 HS3ST4Q9Y661 456 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 H3BQ06 376 aaPredicted RBP9.92□□□□□ -0.82
LIG3-216ENST00000593099 KRT75O95678 551 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 GLRBP48167 497 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 AFF1P51825 1210 aaKnown RBP9.92□□□□□ -0.82
LIG3-216ENST00000593099 RAP1GDS1P52306 607 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 DSC2Q02487 901 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 USP4Q13107 963 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 EIF2B5Q13144 721 aaKnown RBP9.92□□□□□ -0.82
LIG3-216ENST00000593099 PTK2BQ14289 1009 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 ZBTB6Q15916 424 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 C16orf87Q6PH81 154 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 ZNF599Q96NL3 588 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 GNPTGQ9UJJ9 305 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 CRYL1Q9Y2S2 319 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 TDRKHQ9Y2W6 561 aaKnown RBP9.92□□□□□ -0.82
LIG3-216ENST00000593099 DOCK1Q14185 1865 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 MYO5AQ9Y4I1 1855 aaKnown RBP9.92□□□□□ -0.82
LIG3-216ENST00000593099 SCN4AP35499 1836 aa9.92□□□□□ -0.82
LIG3-216ENST00000593099 TRIM43BA6NCK2 446 aa9.91□□□□□ -0.82
LIG3-216ENST00000593099 NCF1BA6NI72 391 aaPredicted RBP9.91□□□□□ -0.82
LIG3-216ENST00000593099 ZNF839A8K0R7 811 aa9.91□□□□□ -0.82
LIG3-216ENST00000593099 NCF1CA8MVU1 366 aaPredicted RBP9.91□□□□□ -0.82
LIG3-216ENST00000593099 RAD51BO15315 384 aa9.91□□□□□ -0.82
LIG3-216ENST00000593099 CFLARO15519 480 aa9.91□□□□□ -0.82
LIG3-216ENST00000593099 ZBTB14O43829 449 aa9.91□□□□□ -0.82
LIG3-216ENST00000593099 MAGEC1O60732 1142 aa9.91□□□□□ -0.82
LIG3-216ENST00000593099 FTH1P02794 183 aa9.91□□□□□ -0.82
LIG3-216ENST00000593099 TPBGLP0DKB5 382 aa9.91□□□□□ -0.82
LIG3-216ENST00000593099 NCF1P14598 390 aaPredicted RBP9.91□□□□□ -0.82
LIG3-216ENST00000593099 DGKAP23743 735 aa9.91□□□□□ -0.82
LIG3-216ENST00000593099 GABRB2P47870 512 aa9.91□□□□□ -0.82
LIG3-216ENST00000593099 DDX39BQ13838 428 aaKnown RBP9.91□□□□□ -0.82
LIG3-216ENST00000593099 ASTE1Q2TB18 679 aaPredicted RBP9.91□□□□□ -0.82
LIG3-216ENST00000593099 CARD16Q5EG05 197 aa9.91□□□□□ -0.82
LIG3-216ENST00000593099 ZNF598Q86UK7 904 aaKnown RBP9.91□□□□□ -0.82
LIG3-216ENST00000593099 LRRC57Q8N9N7 239 aa9.91□□□□□ -0.82
LIG3-216ENST00000593099 ELMO1Q92556 727 aa9.91□□□□□ -0.82
LIG3-216ENST00000593099 TRIM43Q96BQ3 446 aaPredicted RBP9.91□□□□□ -0.82
LIG3-216ENST00000593099 CXorf40BQ96DE9 158 aa9.91□□□□□ -0.82
LIG3-216ENST00000593099 SIPA1Q96FS4 1042 aa9.91□□□□□ -0.82
LIG3-216ENST00000593099 SERAC1Q96JX3 654 aa9.91□□□□□ -0.82
LIG3-216ENST00000593099 CCDC3Q9BQI4 270 aa9.91□□□□□ -0.82
LIG3-216ENST00000593099 SPACA6W5XKT8 324 aa9.91□□□□□ -0.82
LIG3-216ENST00000593099 LAMB1P07942 1786 aa9.91□□□□□ -0.82
LIG3-216ENST00000593099 LRRC37AA6NMS7 1700 aa9.91□□□□□ -0.82
LIG3-216ENST00000593099 TMEM120BA0PK00 339 aa9.91□□□□□ -0.82
LIG3-216ENST00000593099 LINC01553A4QN01 128 aa9.91□□□□□ -0.82
LIG3-216ENST00000593099 GABRDO14764 452 aa9.91□□□□□ -0.82
LIG3-216ENST00000593099 MPOP05164 745 aa9.91□□□□□ -0.82
LIG3-216ENST00000593099 TMED10P49755 219 aaKnown RBP9.91□□□□□ -0.82
LIG3-216ENST00000593099 DSC1Q08554 894 aa9.91□□□□□ -0.82
LIG3-216ENST00000593099 BMPR2Q13873 1038 aa9.91□□□□□ -0.82
LIG3-216ENST00000593099 MS4A13Q5J8X5 152 aa9.91□□□□□ -0.82
LIG3-216ENST00000593099 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP9.91□□□□□ -0.82
LIG3-216ENST00000593099 CMASQ8NFW8 434 aaPredicted RBP9.91□□□□□ -0.82
LIG3-216ENST00000593099 HNRNPLLQ8WVV9 542 aaKnown RBP9.91□□□□□ -0.82
LIG3-216ENST00000593099 GRAMD1AQ96CP6 724 aa9.91□□□□□ -0.82
LIG3-216ENST00000593099 KLHL32Q96NJ5 620 aa9.91□□□□□ -0.82
LIG3-216ENST00000593099 NMRAL1Q9HBL8 299 aa9.91□□□□□ -0.82
LIG3-216ENST00000593099 PCDHGC4Q9Y5F7 938 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms