RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 RPAP2Q8IXW5 612 aaPredicted RBP3.95□□□□□ -1.78
SMCHD1-209ENST00000583441 ZDHHC23Q8IYP9 409 aa3.95□□□□□ -1.78
SMCHD1-209ENST00000583441 PLD5Q8N7P1 536 aa3.95□□□□□ -1.78
SMCHD1-209ENST00000583441 KAT2AQ92830 837 aa3.95□□□□□ -1.78
SMCHD1-209ENST00000583441 FAM149B1Q96BN6 582 aa3.95□□□□□ -1.78
SMCHD1-209ENST00000583441 FOXP1Q9H334 677 aaPredicted RBP3.95□□□□□ -1.78
SMCHD1-209ENST00000583441 MUC13Q9H3R2 512 aa3.95□□□□□ -1.78
SMCHD1-209ENST00000583441 SLC32A1Q9H598 525 aa3.95□□□□□ -1.78
SMCHD1-209ENST00000583441 PRKRIP1Q9H875 184 aaPredicted RBP3.95□□□□□ -1.78
SMCHD1-209ENST00000583441 BABAM1Q9NWV8 329 aa3.95□□□□□ -1.78
SMCHD1-209ENST00000583441 ZDHHC7Q9NXF8 308 aa3.95□□□□□ -1.78
SMCHD1-209ENST00000583441 CDH22Q9UJ99 828 aa3.95□□□□□ -1.78
SMCHD1-209ENST00000583441 PCDHGB5Q9Y5G0 923 aa3.95□□□□□ -1.78
SMCHD1-209ENST00000583441 SLC4A4Q9Y6R1 1079 aa3.95□□□□□ -1.78
SMCHD1-209ENST00000583441 A0A096LPK6 155 aa3.94□□□□□ -1.78
SMCHD1-209ENST00000583441 A0A1W2PQM1 296 aa3.94□□□□□ -1.78
SMCHD1-209ENST00000583441 H3BNX3 289 aa3.94□□□□□ -1.78
SMCHD1-209ENST00000583441 TAF4O00268 1085 aa3.94□□□□□ -1.78
SMCHD1-209ENST00000583441 EBAG9O00559 213 aa3.94□□□□□ -1.78
SMCHD1-209ENST00000583441 UGDHO60701 494 aa3.94□□□□□ -1.78
SMCHD1-209ENST00000583441 TACC1O75410 805 aa3.94□□□□□ -1.78
SMCHD1-209ENST00000583441 TIPRLO75663 272 aa3.94□□□□□ -1.78
SMCHD1-209ENST00000583441 WNT1P04628 370 aa3.94□□□□□ -1.78
SMCHD1-209ENST00000583441 LDHCP07864 332 aa3.94□□□□□ -1.78
SMCHD1-209ENST00000583441 GALTP07902 379 aa3.94□□□□□ -1.78
SMCHD1-209ENST00000583441 MMP3P08254 477 aa3.94□□□□□ -1.78
SMCHD1-209ENST00000583441 HOXB5P09067 269 aa3.94□□□□□ -1.78
SMCHD1-209ENST00000583441 SPARCP09486 303 aa3.94□□□□□ -1.78
SMCHD1-209ENST00000583441 MYZAPP0CAP1 466 aa3.94□□□□□ -1.78
SMCHD1-209ENST00000583441 CTSAP10619 480 aa3.94□□□□□ -1.78
SMCHD1-209ENST00000583441 PCNAP12004 261 aa3.94□□□□□ -1.78
SMCHD1-209ENST00000583441 CDH2P19022 906 aaPredicted RBP3.94□□□□□ -1.78
SMCHD1-209ENST00000583441 ATP5F1P24539 256 aaPredicted RBP3.94□□□□□ -1.78
SMCHD1-209ENST00000583441 PTPN9P43378 593 aa3.94□□□□□ -1.78
SMCHD1-209ENST00000583441 CENPAP49450 140 aa3.94□□□□□ -1.78
SMCHD1-209ENST00000583441 ARSFP54793 590 aa3.94□□□□□ -1.78
SMCHD1-209ENST00000583441 DRG2P55039 364 aaKnown RBP3.94□□□□□ -1.78
SMCHD1-209ENST00000583441 DCTN2Q13561 401 aaKnown RBP3.94□□□□□ -1.78
SMCHD1-209ENST00000583441 GSTA3Q16772 222 aa3.94□□□□□ -1.78
SMCHD1-209ENST00000583441 ME3Q16798 604 aa3.94□□□□□ -1.78
SMCHD1-209ENST00000583441 LEXMQ3ZCV2 418 aa3.94□□□□□ -1.78
SMCHD1-209ENST00000583441 GPATCH4Q5T3I0 446 aaKnown RBP3.94□□□□□ -1.78
SMCHD1-209ENST00000583441 TBC1D9BQ66K14 1250 aa3.94□□□□□ -1.78
SMCHD1-209ENST00000583441 CDC73Q6P1J9 531 aa3.94□□□□□ -1.78
SMCHD1-209ENST00000583441 CFAP161Q6P656 301 aa3.94□□□□□ -1.78
SMCHD1-209ENST00000583441 KLHL24Q6TFL4 600 aa3.94□□□□□ -1.78
SMCHD1-209ENST00000583441 SLC46A3Q7Z3Q1 461 aa3.94□□□□□ -1.78
SMCHD1-209ENST00000583441 PXKQ7Z7A4 578 aa3.94□□□□□ -1.78
SMCHD1-209ENST00000583441 SLC25A41Q8N5S1 370 aa3.94□□□□□ -1.78
SMCHD1-209ENST00000583441 SLC44A5Q8NCS7 719 aa3.94□□□□□ -1.78
SMCHD1-209ENST00000583441 GDPD5Q8WTR4 605 aa3.94□□□□□ -1.78
SMCHD1-209ENST00000583441 SMARCE1Q969G3 411 aa3.94□□□□□ -1.78
SMCHD1-209ENST00000583441 OTULINQ96BN8 352 aa3.94□□□□□ -1.78
SMCHD1-209ENST00000583441 ZNF333Q96JL9 665 aa3.94□□□□□ -1.78
SMCHD1-209ENST00000583441 KLHL15Q96M94 604 aa3.94□□□□□ -1.78
SMCHD1-209ENST00000583441 WDR83Q9BRX9 315 aaKnown RBP3.94□□□□□ -1.78
SMCHD1-209ENST00000583441 H2AFJQ9BTM1 129 aa3.94□□□□□ -1.78
SMCHD1-209ENST00000583441 TMX4Q9H1E5 349 aaPredicted RBP3.94□□□□□ -1.78
SMCHD1-209ENST00000583441 TASP1Q9H6P5 420 aa3.94□□□□□ -1.78
SMCHD1-209ENST00000583441 ZNF304Q9HCX3 659 aa3.94□□□□□ -1.78
SMCHD1-209ENST00000583441 PNRC2Q9NPJ4 139 aaKnown RBP3.94□□□□□ -1.78
SMCHD1-209ENST00000583441 C20orf141Q9NUB4 165 aa3.94□□□□□ -1.78
SMCHD1-209ENST00000583441 TMEM45AQ9NWC5 275 aa3.94□□□□□ -1.78
SMCHD1-209ENST00000583441 KLHL13Q9P2N7 655 aa3.94□□□□□ -1.78
SMCHD1-209ENST00000583441 LIMA1Q9UHB6 759 aaKnown RBP3.94□□□□□ -1.78
SMCHD1-209ENST00000583441 UTS2RQ9UKP6 389 aa3.94□□□□□ -1.78
SMCHD1-209ENST00000583441 LYVE1Q9Y5Y7 322 aa3.94□□□□□ -1.78
SMCHD1-209ENST00000583441 SQORQ9Y6N5 450 aa3.94□□□□□ -1.78
SMCHD1-209ENST00000583441 TRBV5-7A0A0A0MS05 114 aa3.93□□□□□ -1.78
SMCHD1-209ENST00000583441 LY6G6EA0A0G2JKS1 128 aa3.93□□□□□ -1.78
SMCHD1-209ENST00000583441 LRRC53A6NM62 1247 aa3.93□□□□□ -1.78
SMCHD1-209ENST00000583441 FAM157AC9JC47 383 aa3.93□□□□□ -1.78
SMCHD1-209ENST00000583441 ADAM10O14672 748 aa3.93□□□□□ -1.78
SMCHD1-209ENST00000583441 CNOT3O75175 753 aaKnown RBP3.93□□□□□ -1.78
SMCHD1-209ENST00000583441 HEXAP06865 529 aa3.93□□□□□ -1.78
SMCHD1-209ENST00000583441 UNGP13051 313 aaPredicted RBP3.93□□□□□ -1.78
SMCHD1-209ENST00000583441 SLC2A4P14672 509 aa3.93□□□□□ -1.78
SMCHD1-209ENST00000583441 DPP6P42658 865 aa3.93□□□□□ -1.78
SMCHD1-209ENST00000583441 RPS3AP61247 264 aaKnown RBP3.93□□□□□ -1.78
SMCHD1-209ENST00000583441 HIST2H2ACQ16777 129 aaPredicted RBP3.93□□□□□ -1.78
SMCHD1-209ENST00000583441 FBXO43Q4G163 708 aa3.93□□□□□ -1.78
SMCHD1-209ENST00000583441 SNX30Q5VWJ9 437 aa3.93□□□□□ -1.78
SMCHD1-209ENST00000583441 GSTA5Q7RTV2 222 aa3.93□□□□□ -1.78
SMCHD1-209ENST00000583441 SERPINA11Q86U17 422 aa3.93□□□□□ -1.78
SMCHD1-209ENST00000583441 CADM4Q8NFZ8 388 aa3.93□□□□□ -1.78
SMCHD1-209ENST00000583441 ZNF419Q96HQ0 510 aaPredicted RBP3.93□□□□□ -1.78
SMCHD1-209ENST00000583441 SIGLEC11Q96RL6 698 aa3.93□□□□□ -1.78
SMCHD1-209ENST00000583441 SCNM1Q9BWG6 230 aa3.93□□□□□ -1.78
SMCHD1-209ENST00000583441 USP44Q9H0E7 712 aa3.93□□□□□ -1.78
SMCHD1-209ENST00000583441 CXorf56Q9H5V9 222 aa3.93□□□□□ -1.78
SMCHD1-209ENST00000583441 SYNCQ9H7C4 482 aa3.93□□□□□ -1.78
SMCHD1-209ENST00000583441 EIF2B3Q9NR50 452 aaKnown RBP3.93□□□□□ -1.78
SMCHD1-209ENST00000583441 SNTG1Q9NSN8 517 aa3.93□□□□□ -1.78
SMCHD1-209ENST00000583441 SPATS2LQ9NUQ6 558 aaKnown RBP3.93□□□□□ -1.78
SMCHD1-209ENST00000583441 EHD2Q9NZN4 543 aa3.93□□□□□ -1.78
SMCHD1-209ENST00000583441 NCKIPSDQ9NZQ3 722 aa3.93□□□□□ -1.78
SMCHD1-209ENST00000583441 NLKQ9UBE8 527 aa3.93□□□□□ -1.78
SMCHD1-209ENST00000583441 HSPB7Q9UBY9 170 aa3.93□□□□□ -1.78
SMCHD1-209ENST00000583441 CARD8Q9Y2G2 431 aa3.93□□□□□ -1.78
SMCHD1-209ENST00000583441 TRBV5-3A0A0A0MS03 114 aa3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms