RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 TYW3Q6IPR3 259 aaKnown RBP6.59□□□□□ -1.35
SS18-214ENST00000580003 TADA2BQ86TJ2 420 aa6.59□□□□□ -1.35
SS18-214ENST00000580003 TBC1D26Q86UD7 250 aa6.59□□□□□ -1.35
SS18-214ENST00000580003 FAM216AQ8WUB2 273 aa6.59□□□□□ -1.35
SS18-214ENST00000580003 TXNDC15Q96J42 360 aa6.59□□□□□ -1.35
SS18-214ENST00000580003 TM6SF1Q9BZW5 370 aa6.59□□□□□ -1.35
SS18-214ENST00000580003 CLK4Q9HAZ1 481 aaKnown RBP6.59□□□□□ -1.35
SS18-214ENST00000580003 TBX20Q9UMR3 447 aa6.59□□□□□ -1.35
SS18-214ENST00000580003 EVPLQ92817 2033 aa6.59□□□□□ -1.36
SS18-214ENST00000580003 ARID4BQ4LE39 1312 aaPredicted RBP6.58□□□□□ -1.36
SS18-214ENST00000580003 CCDC196A0A1B0GTZ2 297 aa6.58□□□□□ -1.36
SS18-214ENST00000580003 CBY3A6NI87 242 aa6.58□□□□□ -1.36
SS18-214ENST00000580003 XBP1P17861 261 aa6.58□□□□□ -1.36
SS18-214ENST00000580003 EFNB1P98172 346 aa6.58□□□□□ -1.36
SS18-214ENST00000580003 CYP4A11Q02928 519 aa6.58□□□□□ -1.36
SS18-214ENST00000580003 GPR68Q15743 365 aa6.58□□□□□ -1.36
SS18-214ENST00000580003 ZNF766Q5HY98 468 aa6.58□□□□□ -1.36
SS18-214ENST00000580003 ZNF667Q5HYK9 610 aa6.58□□□□□ -1.36
SS18-214ENST00000580003 EFHC1Q5JVL4 640 aa6.58□□□□□ -1.36
SS18-214ENST00000580003 SERTAD4-AS1Q5TG53 156 aa6.58□□□□□ -1.36
SS18-214ENST00000580003 SFTPA2Q8IWL1 248 aa6.58□□□□□ -1.36
SS18-214ENST00000580003 ZCCHC10Q8TBK6 192 aa6.58□□□□□ -1.36
SS18-214ENST00000580003 HVCN1Q96D96 273 aa6.58□□□□□ -1.36
SS18-214ENST00000580003 ZC3HAV1LQ96H79 300 aaKnown RBP6.58□□□□□ -1.36
SS18-214ENST00000580003 MYH16Q9H6N6 1097 aa6.58□□□□□ -1.36
SS18-214ENST00000580003 SAGE1Q9NXZ1 904 aa6.58□□□□□ -1.36
SS18-214ENST00000580003 GGA3Q9NZ52 723 aa6.58□□□□□ -1.36
SS18-214ENST00000580003 WWOXQ9NZC7 414 aa6.58□□□□□ -1.36
SS18-214ENST00000580003 HCN3Q9P1Z3 774 aa6.58□□□□□ -1.36
SS18-214ENST00000580003 KIAA1456Q9P272 454 aa6.58□□□□□ -1.36
SS18-214ENST00000580003 GAGE10A6NGK3 116 aa6.57□□□□□ -1.36
SS18-214ENST00000580003 KRTAP29-1A8MX34 341 aaPredicted RBP6.57□□□□□ -1.36
SS18-214ENST00000580003 GTPBP1O00178 669 aaKnown RBP6.57□□□□□ -1.36
SS18-214ENST00000580003 HOXC11O43248 304 aaPredicted RBP6.57□□□□□ -1.36
SS18-214ENST00000580003 MTA2O94776 668 aa6.57□□□□□ -1.36
SS18-214ENST00000580003 PAPSS2O95340 614 aaPredicted RBP6.57□□□□□ -1.36
SS18-214ENST00000580003 URODP06132 367 aa6.57□□□□□ -1.36
SS18-214ENST00000580003 HNRNPA1P09651 372 aaKnown RBP eCLIP6.57□□□□□ -1.36
SS18-214ENST00000580003 PLA2G2AP14555 144 aa6.57□□□□□ -1.36
SS18-214ENST00000580003 SRD5A1P18405 259 aa6.57□□□□□ -1.36
SS18-214ENST00000580003 POU1F1P28069 291 aa6.57□□□□□ -1.36
SS18-214ENST00000580003 RYKP34925 604 aa6.57□□□□□ -1.36
SS18-214ENST00000580003 RPL3P39023 403 aaKnown RBP6.57□□□□□ -1.36
SS18-214ENST00000580003 DSCR9P59020 149 aa6.57□□□□□ -1.36
SS18-214ENST00000580003 RPP30P78346 268 aaKnown RBP6.57□□□□□ -1.36
SS18-214ENST00000580003 CAMK1Q14012 370 aa6.57□□□□□ -1.36
SS18-214ENST00000580003 VEPH1Q14D04 833 aa6.57□□□□□ -1.36
SS18-214ENST00000580003 ARHGEF6Q15052 776 aa6.57□□□□□ -1.36
SS18-214ENST00000580003 TAF11Q15544 211 aa6.57□□□□□ -1.36
SS18-214ENST00000580003 ASIC2Q16515 512 aa6.57□□□□□ -1.36
SS18-214ENST00000580003 RRM2BQ7LG56 351 aa6.57□□□□□ -1.36
SS18-214ENST00000580003 BHLHA9Q7RTU4 235 aa6.57□□□□□ -1.36
SS18-214ENST00000580003 GPAT4Q86UL3 456 aa6.57□□□□□ -1.36
SS18-214ENST00000580003 CCDC105Q8IYK2 499 aa6.57□□□□□ -1.36
SS18-214ENST00000580003 KIAA2013Q8IYS2 634 aa6.57□□□□□ -1.36
SS18-214ENST00000580003 CLIP4Q8N3C7 705 aa6.57□□□□□ -1.36
SS18-214ENST00000580003 C11orf65Q8NCR3 313 aa6.57□□□□□ -1.36
SS18-214ENST00000580003 PPM1EQ8WY54 764 aa6.57□□□□□ -1.36
SS18-214ENST00000580003 TRIB2Q92519 343 aa6.57□□□□□ -1.36
SS18-214ENST00000580003 SLC25A33Q9BSK2 321 aa6.57□□□□□ -1.36
SS18-214ENST00000580003 TTYH1Q9H313 450 aaPredicted RBP6.57□□□□□ -1.36
SS18-214ENST00000580003 CD93Q9NPY3 652 aa6.57□□□□□ -1.36
SS18-214ENST00000580003 SNTG1Q9NSN8 517 aa6.57□□□□□ -1.36
SS18-214ENST00000580003 AGO1Q9UL18 857 aaKnown RBP6.57□□□□□ -1.36
SS18-214ENST00000580003 SLC45A1Q9Y2W3 748 aa6.57□□□□□ -1.36
SS18-214ENST00000580003 LINC01553A4QN01 128 aa6.56□□□□□ -1.36
SS18-214ENST00000580003 CLEC18AA5D8T8 446 aa6.56□□□□□ -1.36
SS18-214ENST00000580003 C4orf47A7E2U8 309 aa6.56□□□□□ -1.36
SS18-214ENST00000580003 TSPAN4O14817 238 aa6.56□□□□□ -1.36
SS18-214ENST00000580003 PYGLP06737 847 aa6.56□□□□□ -1.36
SS18-214ENST00000580003 FCGR1AP12314 374 aa6.56□□□□□ -1.36
SS18-214ENST00000580003 MXI1P50539 228 aa6.56□□□□□ -1.36
SS18-214ENST00000580003 NR1H2P55055 460 aa6.56□□□□□ -1.36
SS18-214ENST00000580003 ZNF324BQ6AW86 544 aaPredicted RBP6.56□□□□□ -1.36
SS18-214ENST00000580003 NADSYN1Q6IA69 706 aa6.56□□□□□ -1.36
SS18-214ENST00000580003 TMEM81Q6P7N7 255 aa6.56□□□□□ -1.36
SS18-214ENST00000580003 KLHL24Q6TFL4 600 aa6.56□□□□□ -1.36
SS18-214ENST00000580003 NEK10Q6ZWH5 1172 aa6.56□□□□□ -1.36
SS18-214ENST00000580003 TMTC1Q8IUR5 882 aa6.56□□□□□ -1.36
SS18-214ENST00000580003 CLEC18CQ8NCF0 446 aa6.56□□□□□ -1.36
SS18-214ENST00000580003 GJC3Q8NFK1 279 aa6.56□□□□□ -1.36
SS18-214ENST00000580003 FUZQ9BT04 418 aa6.56□□□□□ -1.36
SS18-214ENST00000580003 OR6C3Q9NZP0 311 aa6.56□□□□□ -1.36
SS18-214ENST00000580003 CARD8Q9Y2G2 431 aa6.56□□□□□ -1.36
SS18-214ENST00000580003 DDX52Q9Y2R4 599 aaKnown RBP eCLIP6.56□□□□□ -1.36
SS18-214ENST00000580003 CKAP5Q14008 2032 aa6.55□□□□□ -1.36
SS18-214ENST00000580003 HSPB2A8KAH6 182 aa6.55□□□□□ -1.36
SS18-214ENST00000580003 KLRF2D3W0D1 207 aa6.55□□□□□ -1.36
SS18-214ENST00000580003 ACOT8O14734 319 aa6.55□□□□□ -1.36
SS18-214ENST00000580003 TNPO2O14787 897 aaKnown RBP6.55□□□□□ -1.36
SS18-214ENST00000580003 RGS11O94810 467 aa6.55□□□□□ -1.36
SS18-214ENST00000580003 FMO4P31512 558 aa6.55□□□□□ -1.36
SS18-214ENST00000580003 ITGADQ13349 1161 aa6.55□□□□□ -1.36
SS18-214ENST00000580003 KEAP1Q14145 624 aa6.55□□□□□ -1.36
SS18-214ENST00000580003 HSPB2Q16082 182 aa6.55□□□□□ -1.36
SS18-214ENST00000580003 ESCO2Q56NI9 601 aa6.55□□□□□ -1.36
SS18-214ENST00000580003 PLD5Q8N7P1 536 aa6.55□□□□□ -1.36
SS18-214ENST00000580003 TMED6Q8WW62 240 aa6.55□□□□□ -1.36
SS18-214ENST00000580003 APOPT1Q96IL0 206 aa6.55□□□□□ -1.36
SS18-214ENST00000580003 SIN3AQ96ST3 1273 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms