RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 KCTD19Q17RG1 926 aaPredicted RBP8.66□□□□□ -1.02
NUP88-211ENST00000575976 RALGPS1Q5JS13 557 aa8.66□□□□□ -1.02
NUP88-211ENST00000575976 ANKRD20A2Q5SQ80 823 aa8.66□□□□□ -1.02
NUP88-211ENST00000575976 ANKRD20A1Q5TYW2 823 aa8.66□□□□□ -1.02
NUP88-211ENST00000575976 ANKRD20A3Q5VUR7 823 aa8.66□□□□□ -1.02
NUP88-211ENST00000575976 FAM46CQ5VWP2 391 aa8.66□□□□□ -1.02
NUP88-211ENST00000575976 ALG1LQ6GMV1 187 aa8.66□□□□□ -1.02
NUP88-211ENST00000575976 GDPD4Q6W3E5 623 aa8.66□□□□□ -1.02
NUP88-211ENST00000575976 PRPF39Q86UA1 669 aaKnown RBP8.66□□□□□ -1.02
NUP88-211ENST00000575976 WDR5BQ86VZ2 330 aa8.66□□□□□ -1.02
NUP88-211ENST00000575976 CAMK1DQ8IU85 385 aa8.66□□□□□ -1.02
NUP88-211ENST00000575976 HDDC3Q8N4P3 179 aa8.66□□□□□ -1.02
NUP88-211ENST00000575976 AADATQ8N5Z0 425 aa8.66□□□□□ -1.02
NUP88-211ENST00000575976 C12orf50Q8NA57 414 aaPredicted RBP8.66□□□□□ -1.02
NUP88-211ENST00000575976 RLN3Q8WXF3 142 aa8.66□□□□□ -1.02
NUP88-211ENST00000575976 LRIG1Q96JA1 1093 aa8.66□□□□□ -1.02
NUP88-211ENST00000575976 SPATA13Q96N96 652 aa8.66□□□□□ -1.02
NUP88-211ENST00000575976 TUBGCP5Q96RT8 1024 aa8.66□□□□□ -1.02
NUP88-211ENST00000575976 OSBPL1AQ9BXW6 950 aa8.66□□□□□ -1.02
NUP88-211ENST00000575976 SLC25A51Q9H1U9 297 aa8.66□□□□□ -1.02
NUP88-211ENST00000575976 PABPC3Q9H361 631 aaKnown RBP8.66□□□□□ -1.02
NUP88-211ENST00000575976 SUV39H2Q9H5I1 410 aa8.66□□□□□ -1.02
NUP88-211ENST00000575976 ITM2CQ9NQX7 267 aa8.66□□□□□ -1.02
NUP88-211ENST00000575976 HAUS2Q9NVX0 235 aa8.66□□□□□ -1.02
NUP88-211ENST00000575976 FBXL12Q9NXK8 326 aa8.66□□□□□ -1.02
NUP88-211ENST00000575976 SERGEFQ9UGK8 458 aa8.66□□□□□ -1.02
NUP88-211ENST00000575976 RSPH14Q9UHP6 348 aa8.66□□□□□ -1.02
NUP88-211ENST00000575976 CDC23Q9UJX2 597 aa8.66□□□□□ -1.02
NUP88-211ENST00000575976 TRHDEQ9UKU6 1024 aa8.66□□□□□ -1.02
NUP88-211ENST00000575976 INVSQ9Y283 1065 aa8.66□□□□□ -1.02
NUP88-211ENST00000575976 PCDHGC4Q9Y5F7 938 aa8.66□□□□□ -1.02
NUP88-211ENST00000575976 ATRXP46100 2492 aa8.65□□□□□ -1.02
NUP88-211ENST00000575976 DMDP11532 3685 aa8.65□□□□□ -1.02
NUP88-211ENST00000575976 CCDC163A0A0D9SF12 145 aa8.65□□□□□ -1.02
NUP88-211ENST00000575976 GOLGA6L10A0A0M3HER8 536 aa8.65□□□□□ -1.02
NUP88-211ENST00000575976 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP8.65□□□□□ -1.02
NUP88-211ENST00000575976 MED19A0JLT2 244 aaPredicted RBP8.65□□□□□ -1.02
NUP88-211ENST00000575976 ESPNB1AK53 854 aa8.65□□□□□ -1.02
NUP88-211ENST00000575976 TRAFD1O14545 582 aaPredicted RBP8.65□□□□□ -1.02
NUP88-211ENST00000575976 ZNF500O60304 480 aaPredicted RBP8.65□□□□□ -1.02
NUP88-211ENST00000575976 GCATO75600 419 aa8.65□□□□□ -1.02
NUP88-211ENST00000575976 ZNF189O75820 626 aaPredicted RBP8.65□□□□□ -1.02
NUP88-211ENST00000575976 IFNB1P01574 187 aa8.65□□□□□ -1.02
NUP88-211ENST00000575976 ZSCAN5DPP0CG00 497 aa8.65□□□□□ -1.02
NUP88-211ENST00000575976 CES1P23141 567 aa8.65□□□□□ -1.02
NUP88-211ENST00000575976 PSMB4P28070 264 aa8.65□□□□□ -1.02
NUP88-211ENST00000575976 SERPINA4P29622 427 aa8.65□□□□□ -1.02
NUP88-211ENST00000575976 CD86P42081 329 aa8.65□□□□□ -1.02
NUP88-211ENST00000575976 MAPK8P45983 427 aa8.65□□□□□ -1.02
NUP88-211ENST00000575976 TPMTP51580 245 aa8.65□□□□□ -1.02
NUP88-211ENST00000575976 CNTN1Q12860 1018 aa8.65□□□□□ -1.02
NUP88-211ENST00000575976 TRAF2Q12933 501 aa8.65□□□□□ -1.02
NUP88-211ENST00000575976 GRM3Q14832 879 aa8.65□□□□□ -1.02
NUP88-211ENST00000575976 MAP7D1Q3KQU3 841 aa8.65□□□□□ -1.02
NUP88-211ENST00000575976 ZNF805Q5CZA5 627 aa8.65□□□□□ -1.02
NUP88-211ENST00000575976 CCDC137Q6PK04 289 aaKnown RBP8.65□□□□□ -1.02
NUP88-211ENST00000575976 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP8.65□□□□□ -1.02
NUP88-211ENST00000575976 PARS2Q7L3T8 475 aaKnown RBP8.65□□□□□ -1.02
NUP88-211ENST00000575976 GSTA5Q7RTV2 222 aa8.65□□□□□ -1.02
NUP88-211ENST00000575976 LONP2Q86WA8 852 aa8.65□□□□□ -1.02
NUP88-211ENST00000575976 ZSWIM9Q86XI8 627 aa8.65□□□□□ -1.02
NUP88-211ENST00000575976 FRMD1Q8N878 549 aa8.65□□□□□ -1.02
NUP88-211ENST00000575976 GLIS1Q8NBF1 620 aa8.65□□□□□ -1.02
NUP88-211ENST00000575976 ATL2Q8NHH9 583 aa8.65□□□□□ -1.02
NUP88-211ENST00000575976 SPATA22Q8NHS9 363 aa8.65□□□□□ -1.02
NUP88-211ENST00000575976 KIF18AQ8NI77 898 aa8.65□□□□□ -1.02
NUP88-211ENST00000575976 GANCQ8TET4 914 aa8.65□□□□□ -1.02
NUP88-211ENST00000575976 NELL1Q92832 810 aa8.65□□□□□ -1.02
NUP88-211ENST00000575976 TADA1Q96BN2 335 aa8.65□□□□□ -1.02
NUP88-211ENST00000575976 RTP4Q96DX8 246 aa8.65□□□□□ -1.02
NUP88-211ENST00000575976 IMP4Q96G21 291 aaKnown RBP8.65□□□□□ -1.02
NUP88-211ENST00000575976 ZNF641Q96N77 438 aaPredicted RBP8.65□□□□□ -1.02
NUP88-211ENST00000575976 FCRL5Q96RD9 977 aa8.65□□□□□ -1.02
NUP88-211ENST00000575976 RBM15Q96T37 977 aaKnown RBP eCLIP8.65□□□□□ -1.02
NUP88-211ENST00000575976 OMDQ99983 421 aa8.65□□□□□ -1.02
NUP88-211ENST00000575976 GBA3Q9H227 469 aa8.65□□□□□ -1.02
NUP88-211ENST00000575976 NEUROG2Q9H2A3 272 aa8.65□□□□□ -1.02
NUP88-211ENST00000575976 ATP13A3Q9H7F0 1226 aa8.65□□□□□ -1.02
NUP88-211ENST00000575976 DYRK4Q9NR20 520 aa8.65□□□□□ -1.02
NUP88-211ENST00000575976 PLSCR2Q9NRY7 297 aa8.65□□□□□ -1.02
NUP88-211ENST00000575976 UBP1Q9NZI7 540 aa8.65□□□□□ -1.02
NUP88-211ENST00000575976 USP36Q9P275 1121 aaKnown RBP8.65□□□□□ -1.02
NUP88-211ENST00000575976 SCML1Q9UN30 329 aa8.65□□□□□ -1.02
NUP88-211ENST00000575976 CYP8B1Q9UNU6 501 aa8.65□□□□□ -1.02
NUP88-211ENST00000575976 NCKAP1Q9Y2A7 1128 aa8.65□□□□□ -1.02
NUP88-211ENST00000575976 RAI2Q9Y5P3 530 aa8.65□□□□□ -1.02
NUP88-211ENST00000575976 CHD6Q8TD26 2715 aa8.65□□□□□ -1.03
NUP88-211ENST00000575976 IGHV1OR15-9A0A0B4J2B8 117 aa8.64□□□□□ -1.03
NUP88-211ENST00000575976 TSPAN11A1L157 253 aa8.64□□□□□ -1.03
NUP88-211ENST00000575976 C16orf96A6NNT2 1141 aa8.64□□□□□ -1.03
NUP88-211ENST00000575976 HTRA2O43464 458 aaPredicted RBP8.64□□□□□ -1.03
NUP88-211ENST00000575976 FZD6O60353 706 aa8.64□□□□□ -1.03
NUP88-211ENST00000575976 OPHN1O60890 802 aa8.64□□□□□ -1.03
NUP88-211ENST00000575976 SOCS5O75159 536 aa8.64□□□□□ -1.03
NUP88-211ENST00000575976 ZNF217O75362 1048 aa8.64□□□□□ -1.03
NUP88-211ENST00000575976 PMPCBO75439 489 aa8.64□□□□□ -1.03
NUP88-211ENST00000575976 RNASEH2AO75792 299 aaKnown RBP8.64□□□□□ -1.03
NUP88-211ENST00000575976 METTL18O95568 372 aa8.64□□□□□ -1.03
NUP88-211ENST00000575976 MT-CYBP00156 380 aaPredicted RBP8.64□□□□□ -1.03
NUP88-211ENST00000575976 IGLV3-19P01714 112 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms