RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 MBD3O95983 291 aa18.33■□□□□ 0.52
CHD3-214ENST00000572579 MT-CO3P00414 261 aa18.33■□□□□ 0.52
CHD3-214ENST00000572579 RABIFP47224 123 aa18.33■□□□□ 0.52
CHD3-214ENST00000572579 PDE1CQ14123 709 aaPredicted RBP18.33■□□□□ 0.52
CHD3-214ENST00000572579 PARP15Q460N3 678 aa18.33■□□□□ 0.52
CHD3-214ENST00000572579 AFMIDQ63HM1 303 aa18.33■□□□□ 0.52
CHD3-214ENST00000572579 ARHGAP36Q6ZRI8 547 aa18.33■□□□□ 0.52
CHD3-214ENST00000572579 ZNF354CQ86Y25 554 aa18.33■□□□□ 0.52
CHD3-214ENST00000572579 ARHGAP12Q8IWW6 846 aa18.33■□□□□ 0.52
CHD3-214ENST00000572579 FAM181AQ8N9Y4 354 aa18.33■□□□□ 0.52
CHD3-214ENST00000572579 TP53I13Q8NBR0 393 aaPredicted RBP18.33■□□□□ 0.52
CHD3-214ENST00000572579 FAM174AQ8TBP5 190 aa18.33■□□□□ 0.52
CHD3-214ENST00000572579 FUBP1Q96AE4 644 aaKnown RBP18.33■□□□□ 0.52
CHD3-214ENST00000572579 VCPIP1Q96JH7 1222 aa18.33■□□□□ 0.52
CHD3-214ENST00000572579 GDAP1L1Q96MZ0 367 aa18.33■□□□□ 0.52
CHD3-214ENST00000572579 KCTD15Q96SI1 283 aaPredicted RBP18.33■□□□□ 0.52
CHD3-214ENST00000572579 EPAS1Q99814 870 aa18.33■□□□□ 0.52
CHD3-214ENST00000572579 OSBPL1AQ9BXW6 950 aa18.33■□□□□ 0.52
CHD3-214ENST00000572579 SCUBE2Q9NQ36 999 aa18.33■□□□□ 0.52
CHD3-214ENST00000572579 NLGN3Q9NZ94 848 aa18.33■□□□□ 0.52
CHD3-214ENST00000572579 AIPL1Q9NZN9 384 aa18.33■□□□□ 0.52
CHD3-214ENST00000572579 DKK3Q9UBP4 350 aa18.33■□□□□ 0.52
CHD3-214ENST00000572579 PCSK1NQ9UHG2 260 aa18.33■□□□□ 0.52
CHD3-214ENST00000572579 PCDHB1Q9Y5F3 818 aa18.33■□□□□ 0.52
CHD3-214ENST00000572579 NEMP1O14524 444 aa18.32■□□□□ 0.52
CHD3-214ENST00000572579 FPGTO14772 594 aa18.32■□□□□ 0.52
CHD3-214ENST00000572579 FTLP02792 175 aaPredicted RBP18.32■□□□□ 0.52
CHD3-214ENST00000572579 SKILP12757 684 aa18.32■□□□□ 0.52
CHD3-214ENST00000572579 PSMA2P25787 234 aa18.32■□□□□ 0.52
CHD3-214ENST00000572579 ITPKBP27987 946 aa18.32■□□□□ 0.52
CHD3-214ENST00000572579 HNF1BP35680 557 aa18.32■□□□□ 0.52
CHD3-214ENST00000572579 PAPOLAP51003 745 aaKnown RBP18.32■□□□□ 0.52
CHD3-214ENST00000572579 AIF1P55008 147 aa18.32■□□□□ 0.52
CHD3-214ENST00000572579 RHOAP61586 193 aa18.32■□□□□ 0.52
CHD3-214ENST00000572579 SEMG2Q02383 582 aa18.32■□□□□ 0.52
CHD3-214ENST00000572579 IQCB1Q15051 598 aa18.32■□□□□ 0.52
CHD3-214ENST00000572579 SOWAHCQ53LP3 525 aaPredicted RBP18.32■□□□□ 0.52
CHD3-214ENST00000572579 VPS36Q86VN1 386 aa18.32■□□□□ 0.52
CHD3-214ENST00000572579 PARGQ86W56 976 aa18.32■□□□□ 0.52
CHD3-214ENST00000572579 RBFAQ8N0V3 343 aa18.32■□□□□ 0.52
CHD3-214ENST00000572579 NPWQ8N729 165 aa18.32■□□□□ 0.52
CHD3-214ENST00000572579 CASKIN2Q8WXE0 1202 aa18.32■□□□□ 0.52
CHD3-214ENST00000572579 BBC3Q96PG8 261 aaPredicted RBP18.32■□□□□ 0.52
CHD3-214ENST00000572579 WRAP53Q9BUR4 548 aaKnown RBP18.32■□□□□ 0.52
CHD3-214ENST00000572579 SNRNP25Q9BV90 132 aaKnown RBP18.32■□□□□ 0.52
CHD3-214ENST00000572579 CPEB1Q9BZB8 566 aaKnown RBP18.32■□□□□ 0.52
CHD3-214ENST00000572579 NRSN2Q9GZP1 204 aa18.32■□□□□ 0.52
CHD3-214ENST00000572579 CATSPERBQ9H7T0 1116 aa18.32■□□□□ 0.52
CHD3-214ENST00000572579 CLCA2Q9UQC9 943 aa18.32■□□□□ 0.52
CHD3-214ENST00000572579 A0A1B0GTH6 734 aa18.31■□□□□ 0.52
CHD3-214ENST00000572579 TSPAN11A1L157 253 aa18.31■□□□□ 0.52
CHD3-214ENST00000572579 MUSKO15146 869 aa18.31■□□□□ 0.52
CHD3-214ENST00000572579 OPA1O60313 960 aa18.31■□□□□ 0.52
CHD3-214ENST00000572579 PRAMEF11O60813 436 aa18.31■□□□□ 0.52
CHD3-214ENST00000572579 PRKCGP05129 697 aa18.31■□□□□ 0.52
CHD3-214ENST00000572579 TCF4P15884 667 aa18.31■□□□□ 0.52
CHD3-214ENST00000572579 MIPP30301 263 aa18.31■□□□□ 0.52
CHD3-214ENST00000572579 PRKCIP41743 596 aa18.31■□□□□ 0.52
CHD3-214ENST00000572579 TPI1P60174 286 aa18.31■□□□□ 0.52
CHD3-214ENST00000572579 HNRNPKP61978 463 aaKnown RBP eCLIP18.31■□□□□ 0.52
CHD3-214ENST00000572579 E2F1Q01094 437 aa18.31■□□□□ 0.52
CHD3-214ENST00000572579 NR1I3Q14994 352 aa18.31■□□□□ 0.52
CHD3-214ENST00000572579 TMEM52BQ4KMG9 183 aa18.31■□□□□ 0.52
CHD3-214ENST00000572579 KCTD16Q68DU8 428 aa18.31■□□□□ 0.52
CHD3-214ENST00000572579 CAMK1DQ8IU85 385 aa18.31■□□□□ 0.52
CHD3-214ENST00000572579 DENND6BQ8NEG7 585 aa18.31■□□□□ 0.52
CHD3-214ENST00000572579 DHX35Q9H5Z1 703 aaKnown RBP18.31■□□□□ 0.52
CHD3-214ENST00000572579 PARVAQ9NVD7 372 aa18.31■□□□□ 0.52
CHD3-214ENST00000572579 AP4E1Q9UPM8 1137 aa18.31■□□□□ 0.52
CHD3-214ENST00000572579 COQ6Q9Y2Z9 468 aa18.31■□□□□ 0.52
CHD3-214ENST00000572579 ANKRD62A6NC57 917 aa18.3■□□□□ 0.52
CHD3-214ENST00000572579 GOLGA6L22H0YM25 854 aa18.3■□□□□ 0.52
CHD3-214ENST00000572579 FGF10O15520 208 aaPredicted RBP18.3■□□□□ 0.52
CHD3-214ENST00000572579 IGSF6O95976 241 aa18.3■□□□□ 0.52
CHD3-214ENST00000572579 CELA2BP08218 269 aaPredicted RBP18.3■□□□□ 0.52
CHD3-214ENST00000572579 JUNDP17535 347 aa18.3■□□□□ 0.52
CHD3-214ENST00000572579 IL1R2P27930 398 aa18.3■□□□□ 0.52
CHD3-214ENST00000572579 NDST2P52849 883 aa18.3■□□□□ 0.52
CHD3-214ENST00000572579 DAB2P98082 770 aa18.3■□□□□ 0.52
CHD3-214ENST00000572579 C1orf61Q13536 156 aa18.3■□□□□ 0.52
CHD3-214ENST00000572579 ASIC2Q16515 512 aa18.3■□□□□ 0.52
CHD3-214ENST00000572579 KLHL40Q2TBA0 621 aa18.3■□□□□ 0.52
CHD3-214ENST00000572579 WSCD2Q2TBF2 565 aa18.3■□□□□ 0.52
CHD3-214ENST00000572579 ERMARDQ5T6L9 678 aa18.3■□□□□ 0.52
CHD3-214ENST00000572579 RFX8Q6ZV50 586 aa18.3■□□□□ 0.52
CHD3-214ENST00000572579 ZSCAN30Q86W11 494 aa18.3■□□□□ 0.52
CHD3-214ENST00000572579 TSEN2Q8NCE0 465 aaKnown RBP18.3■□□□□ 0.52
CHD3-214ENST00000572579 NXPE2Q96DL1 559 aa18.3■□□□□ 0.52
CHD3-214ENST00000572579 CLPBQ9H078 707 aa18.3■□□□□ 0.52
CHD3-214ENST00000572579 SUV39H2Q9H5I1 410 aa18.3■□□□□ 0.52
CHD3-214ENST00000572579 PCDH12Q9NPG4 1184 aa18.3■□□□□ 0.52
CHD3-214ENST00000572579 UBA2Q9UBT2 640 aaPredicted RBP18.3■□□□□ 0.52
CHD3-214ENST00000572579 AK5Q9Y6K8 562 aa18.3■□□□□ 0.52
CHD3-214ENST00000572579 CSNK1G3Q9Y6M4 447 aa18.3■□□□□ 0.52
CHD3-214ENST00000572579 TDRD6O60522 2096 aaKnown RBP18.29■□□□□ 0.52
CHD3-214ENST00000572579 A0A1W2PNU3 283 aaPredicted RBP18.29■□□□□ 0.52
CHD3-214ENST00000572579 A0A1W2PQC6 194 aa18.29■□□□□ 0.52
CHD3-214ENST00000572579 BRINP1O60477 761 aa18.29■□□□□ 0.52
CHD3-214ENST00000572579 LRCH4O75427 683 aa18.29■□□□□ 0.52
CHD3-214ENST00000572579 TM7SF2O76062 418 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms