RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 PAXBP1Q9Y5B6 917 aa6.82□□□□□ -1.32
VPS53-213ENST00000572334 ENTPD2Q9Y5L3 495 aa6.82□□□□□ -1.32
VPS53-213ENST00000572334 CSNK1G3Q9Y6M4 447 aa6.82□□□□□ -1.32
VPS53-213ENST00000572334 TLN1Q9Y490 2541 aaKnown RBP6.82□□□□□ -1.32
VPS53-213ENST00000572334 MYO18BQ8IUG5 2567 aa6.81□□□□□ -1.32
VPS53-213ENST00000572334 SDK2Q58EX2 2172 aa6.81□□□□□ -1.32
VPS53-213ENST00000572334 EME2A4GXA9 379 aaPredicted RBP6.81□□□□□ -1.32
VPS53-213ENST00000572334 TK2O00142 265 aa6.81□□□□□ -1.32
VPS53-213ENST00000572334 TPP1O14773 563 aa6.81□□□□□ -1.32
VPS53-213ENST00000572334 AQP9O43315 295 aa6.81□□□□□ -1.32
VPS53-213ENST00000572334 USP12O75317 370 aa6.81□□□□□ -1.32
VPS53-213ENST00000572334 CSO75390 466 aaKnown RBP6.81□□□□□ -1.32
VPS53-213ENST00000572334 TMCC1O94876 653 aa6.81□□□□□ -1.32
VPS53-213ENST00000572334 MBD3O95983 291 aa6.81□□□□□ -1.32
VPS53-213ENST00000572334 UGT2B4P06133 528 aa6.81□□□□□ -1.32
VPS53-213ENST00000572334 PTMAP06454 111 aaKnown RBP6.81□□□□□ -1.32
VPS53-213ENST00000572334 CELA2BP08218 269 aaPredicted RBP6.81□□□□□ -1.32
VPS53-213ENST00000572334 PLEKP08567 350 aaPredicted RBP6.81□□□□□ -1.32
VPS53-213ENST00000572334 TIMP2P16035 220 aa6.81□□□□□ -1.32
VPS53-213ENST00000572334 JUNDP17535 347 aa6.81□□□□□ -1.32
VPS53-213ENST00000572334 SDC4P31431 198 aa6.81□□□□□ -1.32
VPS53-213ENST00000572334 ACTN2P35609 894 aa6.81□□□□□ -1.32
VPS53-213ENST00000572334 LSSP48449 732 aa6.81□□□□□ -1.32
VPS53-213ENST00000572334 POLR2FP61218 127 aaKnown RBP6.81□□□□□ -1.32
VPS53-213ENST00000572334 GABREP78334 506 aa6.81□□□□□ -1.32
VPS53-213ENST00000572334 OGDHQ02218 1023 aa6.81□□□□□ -1.32
VPS53-213ENST00000572334 CCDC15Q0P6D6 951 aa6.81□□□□□ -1.32
VPS53-213ENST00000572334 PDE1CQ14123 709 aaPredicted RBP6.81□□□□□ -1.32
VPS53-213ENST00000572334 CYTH1Q15438 398 aa6.81□□□□□ -1.32
VPS53-213ENST00000572334 CDKN3Q16667 212 aa6.81□□□□□ -1.32
VPS53-213ENST00000572334 CLEC16AQ2KHT3 1053 aa6.81□□□□□ -1.32
VPS53-213ENST00000572334 ISXQ2M1V0 245 aa6.81□□□□□ -1.32
VPS53-213ENST00000572334 DEFB133Q30KQ1 61 aa6.81□□□□□ -1.32
VPS53-213ENST00000572334 CT47A1Q5JQC4 288 aaPredicted RBP6.81□□□□□ -1.32
VPS53-213ENST00000572334 RWDD4Q6NW29 188 aaKnown RBP6.81□□□□□ -1.32
VPS53-213ENST00000572334 ZCCHC8Q6NZY4 707 aaKnown RBP6.81□□□□□ -1.32
VPS53-213ENST00000572334 IGF2-ASQ6U949 168 aa6.81□□□□□ -1.32
VPS53-213ENST00000572334 MON1BQ7L1V2 547 aa6.81□□□□□ -1.32
VPS53-213ENST00000572334 ZSWIM9Q86XI8 627 aa6.81□□□□□ -1.32
VPS53-213ENST00000572334 PHF13Q86YI8 300 aaPredicted RBP6.81□□□□□ -1.32
VPS53-213ENST00000572334 SLC35F3Q8IY50 421 aa6.81□□□□□ -1.32
VPS53-213ENST00000572334 ZNF843Q8N446 348 aa6.81□□□□□ -1.32
VPS53-213ENST00000572334 FAM172AQ8WUF8 416 aa6.81□□□□□ -1.32
VPS53-213ENST00000572334 RAB7BQ96AH8 199 aa6.81□□□□□ -1.32
VPS53-213ENST00000572334 TBC1D31Q96DN5 1066 aa6.81□□□□□ -1.32
VPS53-213ENST00000572334 ZNF578Q96N58 590 aaPredicted RBP6.81□□□□□ -1.32
VPS53-213ENST00000572334 KLHL32Q96NJ5 620 aa6.81□□□□□ -1.32
VPS53-213ENST00000572334 SYT11Q9BT88 431 aa6.81□□□□□ -1.32
VPS53-213ENST00000572334 LRRC61Q9BV99 259 aa6.81□□□□□ -1.32
VPS53-213ENST00000572334 DUSP23Q9BVJ7 150 aa6.81□□□□□ -1.32
VPS53-213ENST00000572334 NUP62CLQ9H1M0 184 aa6.81□□□□□ -1.32
VPS53-213ENST00000572334 PDFQ9HBH1 243 aa6.81□□□□□ -1.32
VPS53-213ENST00000572334 USP29Q9HBJ7 922 aa6.81□□□□□ -1.32
VPS53-213ENST00000572334 NLRC4Q9NPP4 1024 aa6.81□□□□□ -1.32
VPS53-213ENST00000572334 FAM207AQ9NSI2 230 aaPredicted RBP6.81□□□□□ -1.32
VPS53-213ENST00000572334 LMBRD1Q9NUN5 540 aa6.81□□□□□ -1.32
VPS53-213ENST00000572334 LHX3Q9UBR4 397 aa6.81□□□□□ -1.32
VPS53-213ENST00000572334 SALL4Q9UJQ4 1053 aa6.81□□□□□ -1.32
VPS53-213ENST00000572334 MFHAS1Q9Y4C4 1052 aa6.81□□□□□ -1.32
VPS53-213ENST00000572334 BOD1L1Q8NFC6 3051 aa6.8□□□□□ -1.32
VPS53-213ENST00000572334 TSPAN11A1L157 253 aa6.8□□□□□ -1.32
VPS53-213ENST00000572334 NEMP2A6NFY4 417 aa6.8□□□□□ -1.32
VPS53-213ENST00000572334 SIGLEC16A6NMB1 481 aa6.8□□□□□ -1.32
VPS53-213ENST00000572334 WASH4PA8MWX3 477 aa6.8□□□□□ -1.32
VPS53-213ENST00000572334 CDRT15L2A8MXV6 281 aa6.8□□□□□ -1.32
VPS53-213ENST00000572334 GOLGA6L6A8MZA4 724 aa6.8□□□□□ -1.32
VPS53-213ENST00000572334 LMO7DNF2Z398 122 aa6.8□□□□□ -1.32
VPS53-213ENST00000572334 KRIT1O00522 736 aa6.8□□□□□ -1.32
VPS53-213ENST00000572334 FPGTO14772 594 aa6.8□□□□□ -1.32
VPS53-213ENST00000572334 YY2O15391 372 aa6.8□□□□□ -1.32
VPS53-213ENST00000572334 RRP8O43159 456 aaKnown RBP6.8□□□□□ -1.32
VPS53-213ENST00000572334 CCP110O43303 1012 aa6.8□□□□□ -1.32
VPS53-213ENST00000572334 BUB1BO60566 1050 aaPredicted RBP6.8□□□□□ -1.32
VPS53-213ENST00000572334 MMP20O60882 483 aa6.8□□□□□ -1.32
VPS53-213ENST00000572334 RAMP2O60895 175 aa6.8□□□□□ -1.32
VPS53-213ENST00000572334 ZIC2O95409 532 aaPredicted RBP6.8□□□□□ -1.32
VPS53-213ENST00000572334 PIGNO95427 931 aa6.8□□□□□ -1.32
VPS53-213ENST00000572334 POP4O95707 220 aaKnown RBP6.8□□□□□ -1.32
VPS53-213ENST00000572334 ALPPL2P10696 532 aa6.8□□□□□ -1.32
VPS53-213ENST00000572334 GM2AP17900 193 aa6.8□□□□□ -1.32
VPS53-213ENST00000572334 GPD1P21695 349 aa6.8□□□□□ -1.32
VPS53-213ENST00000572334 RGRP47804 291 aa6.8□□□□□ -1.32
VPS53-213ENST00000572334 SNRPD1P62314 119 aaKnown RBP6.8□□□□□ -1.32
VPS53-213ENST00000572334 RPL7AP62424 266 aaKnown RBP6.8□□□□□ -1.32
VPS53-213ENST00000572334 SERINC3Q13530 473 aa6.8□□□□□ -1.32
VPS53-213ENST00000572334 C1orf61Q13536 156 aa6.8□□□□□ -1.32
VPS53-213ENST00000572334 NCAPHQ15003 741 aa6.8□□□□□ -1.32
VPS53-213ENST00000572334 POLD3Q15054 466 aaPredicted RBP6.8□□□□□ -1.32
VPS53-213ENST00000572334 WSCD2Q2TBF2 565 aa6.8□□□□□ -1.32
VPS53-213ENST00000572334 ARL13BQ3SXY8 428 aa6.8□□□□□ -1.32
VPS53-213ENST00000572334 TMEM52BQ4KMG9 183 aa6.8□□□□□ -1.32
VPS53-213ENST00000572334 INO80DQ53TQ3 878 aaPredicted RBP6.8□□□□□ -1.32
VPS53-213ENST00000572334 CAVIN1Q6NZI2 390 aaKnown RBP6.8□□□□□ -1.32
VPS53-213ENST00000572334 CRTC1Q6UUV9 634 aa6.8□□□□□ -1.32
VPS53-213ENST00000572334 GDPD4Q6W3E5 623 aa6.8□□□□□ -1.32
VPS53-213ENST00000572334 LRRC69Q6ZNQ3 347 aa6.8□□□□□ -1.32
VPS53-213ENST00000572334 EFL1Q7Z2Z2 1120 aaKnown RBP6.8□□□□□ -1.32
VPS53-213ENST00000572334 GPR155Q7Z3F1 870 aa6.8□□□□□ -1.32
VPS53-213ENST00000572334 VPS36Q86VN1 386 aa6.8□□□□□ -1.32
VPS53-213ENST00000572334 PHACTR4Q8IZ21 702 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms