RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 KAT5Q92993 513 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 NCLNQ969V3 563 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 CIDECQ96AQ7 238 aaPredicted RBP3.33□□□□□ -1.88
VPS35-208ENST00000568612 RNF31Q96EP0 1072 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 SGF29Q96ES7 293 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 MYEOVQ96EZ4 313 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 ZNF333Q96JL9 665 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 CNDP2Q96KP4 475 aaKnown RBP3.33□□□□□ -1.88
VPS35-208ENST00000568612 HS6ST2Q96MM7 605 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 TSNARE1Q96NA8 513 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 AIFM3Q96NN9 605 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 OPALINQ96PE5 141 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 VPS35Q96QK1 796 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 WDR24Q96S15 920 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 TBCBQ99426 244 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 SEC62Q99442 399 aaKnown RBP3.33□□□□□ -1.88
VPS35-208ENST00000568612 NEU1Q99519 415 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 OLFM1Q99784 485 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 PRRX2Q99811 253 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 PSD2Q9BQI7 771 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 NEURL2Q9BR09 285 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 C9orf16Q9BUW7 83 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 CINPQ9BW66 212 aaPredicted RBP3.33□□□□□ -1.88
VPS35-208ENST00000568612 AP1M1Q9BXS5 423 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 STK33Q9BYT3 514 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 RHOBTB2Q9BYZ6 727 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 WDR11Q9BZH6 1224 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 EDEM3Q9BZQ6 932 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 TRIM15Q9C019 465 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 ZNF700Q9H0M5 742 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 NT5C3AQ9H0P0 336 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 C11orf54Q9H0W9 315 aaPredicted RBP3.33□□□□□ -1.88
VPS35-208ENST00000568612 GSTO2Q9H4Y5 243 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 THAP9Q9H5L6 903 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 INTS9Q9NV88 658 aaKnown RBP3.33□□□□□ -1.88
VPS35-208ENST00000568612 CYP39A1Q9NYL5 469 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 SELENONQ9NZV5 590 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 LUZP4Q9P127 313 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 TESQ9UGI8 421 aaKnown RBP3.33□□□□□ -1.88
VPS35-208ENST00000568612 SLC23A1Q9UHI7 598 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 GMEB2Q9UKD1 530 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 DUSP12Q9UNI6 340 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 PPP2R2CQ9Y2T4 447 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 TDRKHQ9Y2W6 561 aaKnown RBP3.33□□□□□ -1.88
VPS35-208ENST00000568612 MTO1Q9Y2Z2 717 aaKnown RBP3.33□□□□□ -1.88
VPS35-208ENST00000568612 IFT52Q9Y366 437 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 SPEF1Q9Y4P9 236 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 PCDHGA9Q9Y5G4 932 aaKnown RBP3.33□□□□□ -1.88
VPS35-208ENST00000568612 PCDHGA7Q9Y5G6 932 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 PCDHGA6Q9Y5G7 932 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 PCDHGA3Q9Y5H0 932 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 USP16Q9Y5T5 823 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 USH1CQ9Y6N9 552 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 MROH5Q6ZUA9 1318 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 WDR19Q8NEZ3 1342 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 KDM3AQ9Y4C1 1321 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 CEMIPQ8WUJ3 1361 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 CDK12Q9NYV4 1490 aaPredicted RBP3.33□□□□□ -1.88
VPS35-208ENST00000568612 PCF11O94913 1555 aaKnown RBP3.33□□□□□ -1.88
VPS35-208ENST00000568612 MAST1Q9Y2H9 1570 aa3.33□□□□□ -1.88
VPS35-208ENST00000568612 A0A1B0GTW7 788 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 A0A1B0GWJ7 208 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 TYW5A2RUC4 315 aaKnown RBP3.32□□□□□ -1.88
VPS35-208ENST00000568612 WDR91A4D1P6 747 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 GMNCA6NCL1 334 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 CCDC154A6NI56 674 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 A8MVJ9 347 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 GOLGA8SH3BPF8 625 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 STMND1H3BQB6 276 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 H3BUI4 141 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 AREL1O15033 823 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 POLR1CO15160 346 aaPredicted RBP3.32□□□□□ -1.88
VPS35-208ENST00000568612 RAD51BO15315 384 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 CLOCKO15516 846 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 AQP9O43315 295 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 SUV39H1O43463 412 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 HTRA2O43464 458 aaPredicted RBP3.32□□□□□ -1.88
VPS35-208ENST00000568612 TRAPPC3O43617 180 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 SCO2O43819 266 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 B3GALT2O43825 422 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 ECE2O60344 883 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 HSF2BPO75031 334 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 PEX11AO75192 247 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 CLN5O75503 358 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 ALDH1L1O75891 902 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 PLEKHA8P1O95397 391 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 TGDSO95455 350 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 BAG2O95816 211 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 GUCA1CO95843 209 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 GPANK1O95872 356 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 HEXBP07686 556 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 KRT7P08729 469 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 TFPTP0C1Z6 253 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 UBTFL6P0CB48 400 aaPredicted RBP3.32□□□□□ -1.88
VPS35-208ENST00000568612 TPBGLP0DKB5 382 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 ITGAMP11215 1152 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 ICAM2P13598 275 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 SLC5A1P13866 664 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 MYL6BP14649 208 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 ETS2P15036 469 aa3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms