RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 ATP13A1Q9HD20 1204 aa16.4■□□□□ 0.22
CLK3-223ENST00000568488 ARMCX3Q9UH62 379 aaPredicted RBP16.4■□□□□ 0.22
CLK3-223ENST00000568488 SRPK3Q9UPE1 567 aa16.4■□□□□ 0.22
CLK3-223ENST00000568488 ACTL7AQ9Y615 435 aa16.4■□□□□ 0.22
CLK3-223ENST00000568488 SPTBN1Q01082 2364 aaKnown RBP16.4■□□□□ 0.22
CLK3-223ENST00000568488 TOR1BO14657 336 aa16.39■□□□□ 0.21
CLK3-223ENST00000568488 SLC16A3O15427 465 aaKnown RBP16.39■□□□□ 0.21
CLK3-223ENST00000568488 NKX2-8O15522 239 aa16.39■□□□□ 0.21
CLK3-223ENST00000568488 LETM1O95202 739 aaPredicted RBP16.39■□□□□ 0.21
CLK3-223ENST00000568488 TNFP01375 233 aa16.39■□□□□ 0.21
CLK3-223ENST00000568488 UGT2B4P06133 528 aa16.39■□□□□ 0.21
CLK3-223ENST00000568488 PRKAR1AP10644 381 aa16.39■□□□□ 0.21
CLK3-223ENST00000568488 HTR1BP28222 390 aa16.39■□□□□ 0.21
CLK3-223ENST00000568488 FMO5P49326 533 aa16.39■□□□□ 0.21
CLK3-223ENST00000568488 MLLT10P55197 1068 aa16.39■□□□□ 0.21
CLK3-223ENST00000568488 SRP54P61011 504 aaKnown RBP16.39■□□□□ 0.21
CLK3-223ENST00000568488 AMZ1Q400G9 498 aa16.39■□□□□ 0.21
CLK3-223ENST00000568488 EFHC1Q5JVL4 640 aa16.39■□□□□ 0.21
CLK3-223ENST00000568488 CERCAMQ5T4B2 595 aa16.39■□□□□ 0.21
CLK3-223ENST00000568488 LRRC31Q6UY01 552 aa16.39■□□□□ 0.21
CLK3-223ENST00000568488 PIM3Q86V86 326 aa16.39■□□□□ 0.21
CLK3-223ENST00000568488 SFTPA2Q8IWL1 248 aa16.39■□□□□ 0.21
CLK3-223ENST00000568488 CACNA2D3Q8IZS8 1091 aa16.39■□□□□ 0.21
CLK3-223ENST00000568488 TP53I13Q8NBR0 393 aaPredicted RBP16.39■□□□□ 0.21
CLK3-223ENST00000568488 RCBTB1Q8NDN9 531 aa16.39■□□□□ 0.21
CLK3-223ENST00000568488 SPATA20Q8TB22 786 aa16.39■□□□□ 0.21
CLK3-223ENST00000568488 GPBAR1Q8TDU6 330 aa16.39■□□□□ 0.21
CLK3-223ENST00000568488 SLC35C1Q96A29 364 aa16.39■□□□□ 0.21
CLK3-223ENST00000568488 KLHL32Q96NJ5 620 aa16.39■□□□□ 0.21
CLK3-223ENST00000568488 TSG101Q99816 390 aa16.39■□□□□ 0.21
CLK3-223ENST00000568488 WRAP53Q9BUR4 548 aaKnown RBP16.39■□□□□ 0.21
CLK3-223ENST00000568488 TKTL2Q9H0I9 626 aa16.39■□□□□ 0.21
CLK3-223ENST00000568488 CDH19Q9H159 772 aa16.39■□□□□ 0.21
CLK3-223ENST00000568488 WDCPQ9H6R7 721 aa16.39■□□□□ 0.21
CLK3-223ENST00000568488 CFAP45Q9UL16 551 aa16.39■□□□□ 0.21
CLK3-223ENST00000568488 DAAM1Q9Y4D1 1078 aa16.39■□□□□ 0.21
CLK3-223ENST00000568488 PRR19A6NJB7 356 aa16.38■□□□□ 0.21
CLK3-223ENST00000568488 TMEM110-MUSTN1A8MSY1 372 aa16.38■□□□□ 0.21
CLK3-223ENST00000568488 KRIT1O00522 736 aa16.38■□□□□ 0.21
CLK3-223ENST00000568488 MED7O43513 233 aa16.38■□□□□ 0.21
CLK3-223ENST00000568488 GLI1P08151 1106 aa16.38■□□□□ 0.21
CLK3-223ENST00000568488 KRT7P08729 469 aa16.38■□□□□ 0.21
CLK3-223ENST00000568488 PNLIPP16233 465 aa16.38■□□□□ 0.21
CLK3-223ENST00000568488 ITIH2P19823 946 aa16.38■□□□□ 0.21
CLK3-223ENST00000568488 UGT1A3P35503 534 aa16.38■□□□□ 0.21
CLK3-223ENST00000568488 SYKP43405 635 aa16.38■□□□□ 0.21
CLK3-223ENST00000568488 PEX5P50542 639 aa16.38■□□□□ 0.21
CLK3-223ENST00000568488 PDCLQ13371 301 aa16.38■□□□□ 0.21
CLK3-223ENST00000568488 IRF4Q15306 451 aa16.38■□□□□ 0.21
CLK3-223ENST00000568488 LACTB2Q53H82 288 aaPredicted RBP16.38■□□□□ 0.21
CLK3-223ENST00000568488 EFHC2Q5JST6 749 aa16.38■□□□□ 0.21
CLK3-223ENST00000568488 TAF8Q7Z7C8 310 aa16.38■□□□□ 0.21
CLK3-223ENST00000568488 ARHGEF19Q8IW93 802 aa16.38■□□□□ 0.21
CLK3-223ENST00000568488 PMEPA1Q969W9 287 aa16.38■□□□□ 0.21
CLK3-223ENST00000568488 KLQ9UEF7 1012 aa16.38■□□□□ 0.21
CLK3-223ENST00000568488 RCOR1Q9UKL0 485 aa16.38■□□□□ 0.21
CLK3-223ENST00000568488 SDK2Q58EX2 2172 aa16.37■□□□□ 0.21
CLK3-223ENST00000568488 ILVBLA1L0T0 632 aa16.37■□□□□ 0.21
CLK3-223ENST00000568488 DRGXA6NNA5 263 aa16.37■□□□□ 0.21
CLK3-223ENST00000568488 B4DGG1 531 aa16.37■□□□□ 0.21
CLK3-223ENST00000568488 THAP12O43422 761 aa16.37■□□□□ 0.21
CLK3-223ENST00000568488 HSF2BPO75031 334 aa16.37■□□□□ 0.21
CLK3-223ENST00000568488 SRGAP2O75044 1071 aa16.37■□□□□ 0.21
CLK3-223ENST00000568488 ZMPSTE24O75844 475 aa16.37■□□□□ 0.21
CLK3-223ENST00000568488 CMA1P23946 247 aa16.37■□□□□ 0.21
CLK3-223ENST00000568488 CD97P48960 835 aa16.37■□□□□ 0.21
CLK3-223ENST00000568488 ARSDP51689 593 aa16.37■□□□□ 0.21
CLK3-223ENST00000568488 ARF5P84085 180 aa16.37■□□□□ 0.21
CLK3-223ENST00000568488 FKBP3Q00688 224 aaKnown RBP16.37■□□□□ 0.21
CLK3-223ENST00000568488 KLRB1Q12918 225 aa16.37■□□□□ 0.21
CLK3-223ENST00000568488 DEFB109BQ30KR1 87 aa16.37■□□□□ 0.21
CLK3-223ENST00000568488 C14orf28Q4W4Y0 310 aa16.37■□□□□ 0.21
CLK3-223ENST00000568488 FHL5Q5TD97 284 aa16.37■□□□□ 0.21
CLK3-223ENST00000568488 ZNF606Q8WXB4 792 aa16.37■□□□□ 0.21
CLK3-223ENST00000568488 APOOQ9BUR5 198 aa16.37■□□□□ 0.21
CLK3-223ENST00000568488 GTPBP4Q9BZE4 634 aaKnown RBP16.37■□□□□ 0.21
CLK3-223ENST00000568488 DPEP2Q9H4A9 486 aa16.37■□□□□ 0.21
CLK3-223ENST00000568488 ANLNQ9NQW6 1124 aa16.37■□□□□ 0.21
CLK3-223ENST00000568488 COQ6Q9Y2Z9 468 aa16.37■□□□□ 0.21
CLK3-223ENST00000568488 AREL1O15033 823 aa16.36■□□□□ 0.21
CLK3-223ENST00000568488 B4GAT1O43505 415 aa16.36■□□□□ 0.21
CLK3-223ENST00000568488 DUX1O43812 170 aa16.36■□□□□ 0.21
CLK3-223ENST00000568488 RAD1O60671 282 aa16.36■□□□□ 0.21
CLK3-223ENST00000568488 CPNE6O95741 557 aa16.36■□□□□ 0.21
CLK3-223ENST00000568488 FGF3P11487 239 aaPredicted RBP16.36■□□□□ 0.21
CLK3-223ENST00000568488 ALDH4A1P30038 563 aa16.36■□□□□ 0.21
CLK3-223ENST00000568488 OR1D5P58170 312 aa16.36■□□□□ 0.21
CLK3-223ENST00000568488 DNM1Q05193 864 aaKnown RBP16.36■□□□□ 0.21
CLK3-223ENST00000568488 CETN1Q12798 172 aa16.36■□□□□ 0.21
CLK3-223ENST00000568488 SEPT6Q14141 434 aa16.36■□□□□ 0.21
CLK3-223ENST00000568488 NFATC4Q14934 902 aa16.36■□□□□ 0.21
CLK3-223ENST00000568488 LRRC14Q15048 493 aa16.36■□□□□ 0.21
CLK3-223ENST00000568488 ANKRD40Q6AI12 368 aa16.36■□□□□ 0.21
CLK3-223ENST00000568488 OGFOD3Q6PK18 319 aa16.36■□□□□ 0.21
CLK3-223ENST00000568488 ZNF683Q8IZ20 524 aa16.36■□□□□ 0.21
CLK3-223ENST00000568488 TEX19Q8NA77 164 aa16.36■□□□□ 0.21
CLK3-223ENST00000568488 ATL2Q8NHH9 583 aa16.36■□□□□ 0.21
CLK3-223ENST00000568488 APOBEC4Q8WW27 367 aaKnown RBP16.36■□□□□ 0.21
CLK3-223ENST00000568488 RBM15Q96T37 977 aaKnown RBP eCLIP16.36■□□□□ 0.218e-7■■■□□ 18.1
CLK3-223ENST00000568488 PIGVQ9NUD9 493 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms