RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 KRIT1O00522 736 aa13.62□□□□□ -0.23
CLK3-218ENST00000566926 CTIFO43310 598 aaKnown RBP13.62□□□□□ -0.23
CLK3-218ENST00000566926 ZNF821O75541 412 aaPredicted RBP13.62□□□□□ -0.23
CLK3-218ENST00000566926 LEFTY1O75610 366 aa13.62□□□□□ -0.23
CLK3-218ENST00000566926 CER1O95813 267 aa13.62□□□□□ -0.23
CLK3-218ENST00000566926 IGSF6O95976 241 aa13.62□□□□□ -0.23
CLK3-218ENST00000566926 IGHV4-34P06331 123 aa13.62□□□□□ -0.23
CLK3-218ENST00000566926 CTSLP07711 333 aa13.62□□□□□ -0.23
CLK3-218ENST00000566926 RARAP10276 462 aa13.62□□□□□ -0.23
CLK3-218ENST00000566926 IL1R2P27930 398 aa13.62□□□□□ -0.23
CLK3-218ENST00000566926 SERPINB6P35237 376 aa13.62□□□□□ -0.23
CLK3-218ENST00000566926 MAPK8P45983 427 aa13.62□□□□□ -0.23
CLK3-218ENST00000566926 GRIA4P48058 902 aa13.62□□□□□ -0.23
CLK3-218ENST00000566926 RHOAP61586 193 aa13.62□□□□□ -0.23
CLK3-218ENST00000566926 RACK1P63244 317 aaKnown RBP13.62□□□□□ -0.23
CLK3-218ENST00000566926 KRT81Q14533 505 aa13.62□□□□□ -0.23
CLK3-218ENST00000566926 GRM3Q14832 879 aa13.62□□□□□ -0.23
CLK3-218ENST00000566926 SMTNL2Q2TAL5 461 aa13.62□□□□□ -0.23
CLK3-218ENST00000566926 UAP1L1Q3KQV9 507 aa13.62□□□□□ -0.23
CLK3-218ENST00000566926 POM121L1PQ3SYA9 428 aa13.62□□□□□ -0.23
CLK3-218ENST00000566926 SLC45A4Q5BKX6 768 aa13.62□□□□□ -0.23
CLK3-218ENST00000566926 TFDP3Q5H9I0 405 aa13.62□□□□□ -0.23
CLK3-218ENST00000566926 KCNT1Q5JUK3 1230 aa13.62□□□□□ -0.23
CLK3-218ENST00000566926 AGBL4Q5VU57 503 aa13.62□□□□□ -0.23
CLK3-218ENST00000566926 ERN2Q76MJ5 926 aaKnown RBP13.62□□□□□ -0.23
CLK3-218ENST00000566926 ADAT2Q7Z6V5 191 aaKnown RBP13.62□□□□□ -0.23
CLK3-218ENST00000566926 MINDY1Q8N5J2 469 aa13.62□□□□□ -0.23
CLK3-218ENST00000566926 KCTD6Q8NC69 237 aa13.62□□□□□ -0.23
CLK3-218ENST00000566926 C1orf216Q8TAB5 229 aa13.62□□□□□ -0.23
CLK3-218ENST00000566926 GRIN3AQ8TCU5 1115 aa13.62□□□□□ -0.23
CLK3-218ENST00000566926 GDAP1L1Q96MZ0 367 aa13.62□□□□□ -0.23
CLK3-218ENST00000566926 HDAC8Q9BY41 377 aa13.62□□□□□ -0.23
CLK3-218ENST00000566926 OSBPL8Q9BZF1 889 aa13.62□□□□□ -0.23
CLK3-218ENST00000566926 TM6SF2Q9BZW4 377 aa13.62□□□□□ -0.23
CLK3-218ENST00000566926 ZDHHC6Q9H6R6 413 aa13.62□□□□□ -0.23
CLK3-218ENST00000566926 TM9SF3Q9HD45 589 aa13.62□□□□□ -0.23
CLK3-218ENST00000566926 UBA2Q9UBT2 640 aaPredicted RBP13.62□□□□□ -0.23
CLK3-218ENST00000566926 WASF2Q9Y6W5 498 aa13.62□□□□□ -0.23
CLK3-218ENST00000566926 SPTBN2O15020 2390 aa13.61□□□□□ -0.23
CLK3-218ENST00000566926 LRRD1A4D1F6 860 aa13.61□□□□□ -0.23
CLK3-218ENST00000566926 PDE2AO00408 941 aaPredicted RBP13.61□□□□□ -0.23
CLK3-218ENST00000566926 TM4SF5O14894 197 aa13.61□□□□□ -0.23
CLK3-218ENST00000566926 PRAMEF11O60813 436 aa13.61□□□□□ -0.23
CLK3-218ENST00000566926 TMCC1O94876 653 aa13.61□□□□□ -0.23
CLK3-218ENST00000566926 ITGB7P26010 798 aa13.61□□□□□ -0.23
CLK3-218ENST00000566926 PAPOLAP51003 745 aaKnown RBP13.61□□□□□ -0.23
CLK3-218ENST00000566926 NEK3P51956 506 aa13.61□□□□□ -0.23
CLK3-218ENST00000566926 GRIK2Q13002 908 aa13.61□□□□□ -0.23
CLK3-218ENST00000566926 SLC14A1Q13336 389 aa13.61□□□□□ -0.23
CLK3-218ENST00000566926 ZNF211Q13398 564 aaPredicted RBP13.61□□□□□ -0.23
CLK3-218ENST00000566926 DPYSQ14117 519 aa13.61□□□□□ -0.23
CLK3-218ENST00000566926 TFDP2Q14188 446 aa13.61□□□□□ -0.23
CLK3-218ENST00000566926 TAZQ16635 292 aa13.61□□□□□ -0.23
CLK3-218ENST00000566926 MYLK3Q32MK0 819 aa13.61□□□□□ -0.23
CLK3-218ENST00000566926 FBXL19Q6PCT2 694 aa13.61□□□□□ -0.23
CLK3-218ENST00000566926 TMCO3Q6UWJ1 677 aa13.61□□□□□ -0.23
CLK3-218ENST00000566926 TRIM69Q86WT6 500 aa13.61□□□□□ -0.23
CLK3-218ENST00000566926 MMGT1Q8N4V1 131 aa13.61□□□□□ -0.23
CLK3-218ENST00000566926 FAM71BQ8TC56 605 aa13.61□□□□□ -0.23
CLK3-218ENST00000566926 RAB7BQ96AH8 199 aa13.61□□□□□ -0.23
CLK3-218ENST00000566926 ARRDC3Q96B67 414 aa13.61□□□□□ -0.23
CLK3-218ENST00000566926 CELF6Q96J87 481 aaKnown RBP13.61□□□□□ -0.23
CLK3-218ENST00000566926 MS4A14Q96JA4 679 aa13.61□□□□□ -0.23
CLK3-218ENST00000566926 ZNF670Q9BS34 389 aa13.61□□□□□ -0.23
CLK3-218ENST00000566926 SLC39A8Q9C0K1 460 aa13.61□□□□□ -0.23
CLK3-218ENST00000566926 SP110Q9HB58 689 aa13.61□□□□□ -0.23
CLK3-218ENST00000566926 DNAAF2Q9NVR5 837 aaKnown RBP13.61□□□□□ -0.23
CLK3-218ENST00000566926 FEZ2Q9UHY8 353 aaPredicted RBP13.61□□□□□ -0.23
CLK3-218ENST00000566926 DMTF1Q9Y222 760 aa13.61□□□□□ -0.23
CLK3-218ENST00000566926 ACTL7AQ9Y615 435 aa13.61□□□□□ -0.23
CLK3-218ENST00000566926 CACNA1AO00555 2505 aa13.61□□□□□ -0.23
CLK3-218ENST00000566926 UPK3BL1B0FP48 263 aa13.6□□□□□ -0.23
CLK3-218ENST00000566926 UPK3BL2E5RIL1 263 aa13.6□□□□□ -0.23
CLK3-218ENST00000566926 DFFAO00273 331 aa13.6□□□□□ -0.23
CLK3-218ENST00000566926 PLK4O00444 970 aa13.6□□□□□ -0.23
CLK3-218ENST00000566926 LATO43561 262 aa13.6□□□□□ -0.23
CLK3-218ENST00000566926 DFNA5O60443 496 aa13.6□□□□□ -0.23
CLK3-218ENST00000566926 KDELR1P24390 212 aa13.6□□□□□ -0.23
CLK3-218ENST00000566926 MCM3P25205 808 aa13.6□□□□□ -0.23
CLK3-218ENST00000566926 GJC1P36383 396 aa13.6□□□□□ -0.23
CLK3-218ENST00000566926 CDKN2BP42772 138 aa13.6□□□□□ -0.23
CLK3-218ENST00000566926 CSNK1EP49674 416 aaKnown RBP13.6□□□□□ -0.23
CLK3-218ENST00000566926 METAP1P53582 386 aa13.6□□□□□ -0.23
CLK3-218ENST00000566926 CDH6P55285 790 aa13.6□□□□□ -0.23
CLK3-218ENST00000566926 C21orf59P57076 290 aa13.6□□□□□ -0.23
CLK3-218ENST00000566926 IL10RBQ08334 325 aa13.6□□□□□ -0.23
CLK3-218ENST00000566926 RFTN1Q14699 578 aaPredicted RBP13.6□□□□□ -0.23
CLK3-218ENST00000566926 SETMARQ53H47 684 aaPredicted RBP13.6□□□□□ -0.23
CLK3-218ENST00000566926 ZNF805Q5CZA5 627 aa13.6□□□□□ -0.23
CLK3-218ENST00000566926 PIP5KL1Q5T9C9 394 aa13.6□□□□□ -0.23
CLK3-218ENST00000566926 TMCO4Q5TGY1 634 aa13.6□□□□□ -0.23
CLK3-218ENST00000566926 AFMIDQ63HM1 303 aa13.6□□□□□ -0.23
CLK3-218ENST00000566926 LEKR1Q6ZMV7 388 aa13.6□□□□□ -0.23
CLK3-218ENST00000566926 SPOCD1Q6ZMY3 1216 aa13.6□□□□□ -0.23
CLK3-218ENST00000566926 CPNE8Q86YQ8 564 aa13.6□□□□□ -0.23
CLK3-218ENST00000566926 TTC13Q8NBP0 860 aa13.6□□□□□ -0.23
CLK3-218ENST00000566926 CSPG4P5Q96PW8 444 aa13.6□□□□□ -0.23
CLK3-218ENST00000566926 KLC2Q9H0B6 622 aa13.6□□□□□ -0.23
CLK3-218ENST00000566926 SLC32A1Q9H598 525 aa13.6□□□□□ -0.23
CLK3-218ENST00000566926 PCDH18Q9HCL0 1135 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms