RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 TTKP33981 857 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 FOLR3P41439 243 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 CPA2P48052 419 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 CLK3P49761 638 aaKnown RBP5.23□□□□□ -1.57
VPS35-205ENST00000563984 RARRES1P49788 294 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 CACNB3P54284 484 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 GFPT1Q06210 699 aaPredicted RBP5.23□□□□□ -1.57
VPS35-205ENST00000563984 CSTF3Q12996 717 aaKnown RBP5.23□□□□□ -1.57
VPS35-205ENST00000563984 HLXQ14774 488 aaPredicted RBP5.23□□□□□ -1.57
VPS35-205ENST00000563984 GPR162Q16538 588 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 TMEM266Q2M3C6 531 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 SLC39A12Q504Y0 691 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 SLC44A4Q53GD3 710 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 MDH1BQ5I0G3 518 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 GRTP1Q5TC63 336 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 VWA5B1Q5TIE3 1220 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 ANXA8L1Q5VT79 327 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 RPUSD3Q6P087 351 aaKnown RBP5.23□□□□□ -1.57
VPS35-205ENST00000563984 METTL2BQ6P1Q9 378 aaKnown RBP5.23□□□□□ -1.57
VPS35-205ENST00000563984 CLEC2AQ6UVW9 174 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 LRIG3Q6UXM1 1119 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 KIF6Q6ZMV9 814 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 KRT27Q7Z3Y8 459 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 TMPRSS9Q7Z410 1059 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 ADCK1Q86TW2 530 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 SLC22A9Q8IVM8 553 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 CEP97Q8IW35 865 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 KIAA0319LQ8IZA0 1049 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 C10orf53Q8N6V4 93 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 PDPRQ8NCN5 879 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 GADD45GIP1Q8TAE8 222 aaPredicted RBP5.23□□□□□ -1.57
VPS35-205ENST00000563984 KLHDC4Q8TBB5 520 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 MYCBPAPQ8TBZ2 947 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 SPPL3Q8TCT6 385 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 IRGQQ8WZA9 623 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 STARD8Q92502 1023 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 ANKS1AQ92625 1134 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 SUCLG2Q96I99 432 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 CFAP57Q96MR6 1250 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 NUP88Q99567 741 aaPredicted RBP5.23□□□□□ -1.57
VPS35-205ENST00000563984 SMOQ99835 787 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 PUS3Q9BZE2 481 aaKnown RBP5.23□□□□□ -1.57
VPS35-205ENST00000563984 CARD9Q9H257 536 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 GORASP2Q9H8Y8 452 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 MRM3Q9HC36 420 aaKnown RBP5.23□□□□□ -1.57
VPS35-205ENST00000563984 ARFGAP3Q9NP61 516 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 VPS45Q9NRW7 570 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 IL37Q9NZH6 218 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 VSX1Q9NZR4 365 aaPredicted RBP5.23□□□□□ -1.57
VPS35-205ENST00000563984 ACTR3BQ9P1U1 418 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 UBA2Q9UBT2 640 aaPredicted RBP5.23□□□□□ -1.57
VPS35-205ENST00000563984 TLK1Q9UKI8 766 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 DTNAQ9Y4J8 743 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 PCDHGA1Q9Y5H4 931 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 ELP1O95163 1332 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 SALL3Q9BXA9 1300 aa5.23□□□□□ -1.57
VPS35-205ENST00000563984 A0A087X0M5 115 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 A0A1B0GX30 115 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 ARHGEF37A1IGU5 675 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 NCF1BA6NI72 391 aaPredicted RBP5.22□□□□□ -1.57
VPS35-205ENST00000563984 A6NLC8 198 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 NCF1CA8MVU1 366 aaPredicted RBP5.22□□□□□ -1.57
VPS35-205ENST00000563984 TARM1B6A8C7 271 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 RAD51BO15315 384 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 PROM1O43490 865 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 CCNT1O60563 726 aaKnown RBP5.22□□□□□ -1.57
VPS35-205ENST00000563984 SUN1O94901 812 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 SEC31AO94979 1220 aaKnown RBP5.22□□□□□ -1.57
VPS35-205ENST00000563984 CHEK2O96017 543 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 HMGN1P05114 100 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 CLTAP09496 248 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 ATP1A3P13637 1013 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 EIF2S2P20042 333 aaKnown RBP5.22□□□□□ -1.57
VPS35-205ENST00000563984 KCNA5P22460 613 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 TBXAS1P24557 533 aaPredicted RBP5.22□□□□□ -1.57
VPS35-205ENST00000563984 PRDX5P30044 214 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 CIITAP33076 1130 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 PPP1R2P41236 205 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 HTR2BP41595 481 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 PCP4P48539 62 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 PIK3CGP48736 1102 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 PTH2RP49190 550 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 CCR3P51677 355 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 CASP5P51878 434 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 HK3P52790 923 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 ACTR1AP61163 376 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 TSPAN5P62079 268 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 SIM1P81133 766 aaPredicted RBP5.22□□□□□ -1.57
VPS35-205ENST00000563984 ARF5P84085 180 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 TNFAIP2Q03169 654 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 LGALS3BPQ08380 585 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 GOLGA8FQ08AF8 430 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 GOLGA8DPQ0D2H9 430 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 DNAJC3Q13217 504 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 NOGQ13253 232 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 RIPK1Q13546 671 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 BMPR2Q13873 1038 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 GTF2H3Q13889 308 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 DMC1Q14565 340 aa5.22□□□□□ -1.57
VPS35-205ENST00000563984 PFKFB3Q16875 520 aaPredicted RBP5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms