RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 AREL1O15033 823 aa17.04■□□□□ 0.32
CLK3-210ENST00000563112 INSIG1O15503 277 aa17.04■□□□□ 0.32
CLK3-210ENST00000563112 RFPL3O75679 317 aa17.04■□□□□ 0.32
CLK3-210ENST00000563112 PALMO75781 387 aa17.04■□□□□ 0.32
CLK3-210ENST00000563112 TIMP2P16035 220 aa17.04■□□□□ 0.32
CLK3-210ENST00000563112 ELP6Q0PNE2 266 aa17.04■□□□□ 0.32
CLK3-210ENST00000563112 DNAJC3Q13217 504 aa17.04■□□□□ 0.32
CLK3-210ENST00000563112 CCDC122Q5T0U0 273 aa17.04■□□□□ 0.32
CLK3-210ENST00000563112 ALKBH5Q6P6C2 394 aaKnown RBP17.04■□□□□ 0.32
CLK3-210ENST00000563112 DHRS13Q6UX07 377 aa17.04■□□□□ 0.32
CLK3-210ENST00000563112 CYP4V2Q6ZWL3 525 aaPredicted RBP17.04■□□□□ 0.32
CLK3-210ENST00000563112 KANSL1Q7Z3B3 1105 aa17.04■□□□□ 0.32
CLK3-210ENST00000563112 PAF1Q8N7H5 531 aa17.04■□□□□ 0.32
CLK3-210ENST00000563112 ZNF641Q96N77 438 aaPredicted RBP17.04■□□□□ 0.32
CLK3-210ENST00000563112 CINPQ9BW66 212 aaPredicted RBP17.04■□□□□ 0.32
CLK3-210ENST00000563112 THAP2Q9H0W7 228 aa17.04■□□□□ 0.32
CLK3-210ENST00000563112 SUV39H2Q9H5I1 410 aa17.04■□□□□ 0.32
CLK3-210ENST00000563112 DNAJC28Q9NX36 388 aa17.04■□□□□ 0.32
CLK3-210ENST00000563112 GGT7Q9UJ14 662 aa17.04■□□□□ 0.32
CLK3-210ENST00000563112 ITM2BQ9Y287 266 aa17.04■□□□□ 0.32
CLK3-210ENST00000563112 KNTC1P50748 2209 aa17.04■□□□□ 0.32
CLK3-210ENST00000563112 ARID1BQ8NFD5 2236 aaPredicted RBP17.04■□□□□ 0.32
CLK3-210ENST00000563112 CHD6Q8TD26 2715 aa17.04■□□□□ 0.32
CLK3-210ENST00000563112 TDRD6O60522 2096 aaKnown RBP17.03■□□□□ 0.32
CLK3-210ENST00000563112 A0A087X0T9 212 aa17.03■□□□□ 0.32
CLK3-210ENST00000563112 RAD51BO15315 384 aa17.03■□□□□ 0.32
CLK3-210ENST00000563112 CBFA2T2O43439 604 aa17.03■□□□□ 0.32
CLK3-210ENST00000563112 MMP20O60882 483 aa17.03■□□□□ 0.32
CLK3-210ENST00000563112 TM7SF2O76062 418 aa17.03■□□□□ 0.32
CLK3-210ENST00000563112 GYPCP04921 128 aa17.03■□□□□ 0.32
CLK3-210ENST00000563112 FAM228BP0C875 321 aa17.03■□□□□ 0.32
CLK3-210ENST00000563112 ALPPL2P10696 532 aa17.03■□□□□ 0.32
CLK3-210ENST00000563112 CKMT2P17540 419 aa17.03■□□□□ 0.32
CLK3-210ENST00000563112 DGKAP23743 735 aa17.03■□□□□ 0.32
CLK3-210ENST00000563112 CASP14P31944 242 aa17.03■□□□□ 0.32
CLK3-210ENST00000563112 CSNK1DP48730 415 aa17.03■□□□□ 0.32
CLK3-210ENST00000563112 HNRNPKP61978 463 aaKnown RBP eCLIP17.03■□□□□ 0.32
CLK3-210ENST00000563112 IL10RBQ08334 325 aa17.03■□□□□ 0.32
CLK3-210ENST00000563112 ZNF211Q13398 564 aaPredicted RBP17.03■□□□□ 0.32
CLK3-210ENST00000563112 ILKQ13418 452 aa17.03■□□□□ 0.32
CLK3-210ENST00000563112 RFTN1Q14699 578 aaPredicted RBP17.03■□□□□ 0.32
CLK3-210ENST00000563112 SMAD1Q15797 465 aaKnown RBP17.03■□□□□ 0.32
CLK3-210ENST00000563112 DPYSL2Q16555 572 aa17.03■□□□□ 0.32
CLK3-210ENST00000563112 LRRC73Q5JTD7 316 aa17.03■□□□□ 0.32
CLK3-210ENST00000563112 AFMIDQ63HM1 303 aa17.03■□□□□ 0.32
CLK3-210ENST00000563112 SRLQ86TD4 932 aa17.03■□□□□ 0.32
CLK3-210ENST00000563112 TMPRSS12Q86WS5 348 aa17.03■□□□□ 0.32
CLK3-210ENST00000563112 ARHGAP12Q8IWW6 846 aa17.03■□□□□ 0.32
CLK3-210ENST00000563112 SLC22A18ASQ8N1D0 253 aa17.03■□□□□ 0.32
CLK3-210ENST00000563112 SLC25A45Q8N413 288 aa17.03■□□□□ 0.32
CLK3-210ENST00000563112 HSPH1Q92598 858 aa17.03■□□□□ 0.32
CLK3-210ENST00000563112 VOPP1Q96AW1 172 aa17.03■□□□□ 0.32
CLK3-210ENST00000563112 TUBGCP5Q96RT8 1024 aa17.03■□□□□ 0.32
CLK3-210ENST00000563112 KLF6Q99612 283 aaPredicted RBP17.03■□□□□ 0.32
CLK3-210ENST00000563112 NUP85Q9BW27 656 aa17.03■□□□□ 0.32
CLK3-210ENST00000563112 XPO4Q9C0E2 1151 aaKnown RBP17.03■□□□□ 0.32
CLK3-210ENST00000563112 ANAPC7Q9UJX3 599 aa17.03■□□□□ 0.32
CLK3-210ENST00000563112 PLXNB3Q9ULL4 1909 aa17.02■□□□□ 0.32
CLK3-210ENST00000563112 SPTY2D1-AS1A0A0U1RR47 76 aa17.02■□□□□ 0.32
CLK3-210ENST00000563112 H3BM21 787 aa17.02■□□□□ 0.32
CLK3-210ENST00000563112 MYO1FO00160 1098 aa17.02■□□□□ 0.32
CLK3-210ENST00000563112 SPINT1O43278 529 aa17.02■□□□□ 0.32
CLK3-210ENST00000563112 SIGLEC6O43699 453 aa17.02■□□□□ 0.32
CLK3-210ENST00000563112 PIAS2O75928 621 aa17.02■□□□□ 0.32
CLK3-210ENST00000563112 PIGNO95427 931 aa17.02■□□□□ 0.32
CLK3-210ENST00000563112 CYP1A2P05177 515 aa17.02■□□□□ 0.32
CLK3-210ENST00000563112 SERPINA4P29622 427 aa17.02■□□□□ 0.32
CLK3-210ENST00000563112 HNF1BP35680 557 aa17.02■□□□□ 0.32
CLK3-210ENST00000563112 ACADVLP49748 655 aa17.02■□□□□ 0.32
CLK3-210ENST00000563112 RENBPP51606 427 aa17.02■□□□□ 0.32
CLK3-210ENST00000563112 THOP1P52888 689 aa17.02■□□□□ 0.32
CLK3-210ENST00000563112 DAB2P98082 770 aa17.02■□□□□ 0.32
CLK3-210ENST00000563112 DPYSQ14117 519 aa17.02■□□□□ 0.32
CLK3-210ENST00000563112 PDE1CQ14123 709 aaPredicted RBP17.02■□□□□ 0.32
CLK3-210ENST00000563112 PTK2BQ14289 1009 aa17.02■□□□□ 0.32
CLK3-210ENST00000563112 SMTNL2Q2TAL5 461 aa17.02■□□□□ 0.32
CLK3-210ENST00000563112 TMEM52BQ4KMG9 183 aa17.02■□□□□ 0.32
CLK3-210ENST00000563112 ERAP2Q6P179 960 aa17.02■□□□□ 0.32
CLK3-210ENST00000563112 BRAT1Q6PJG6 821 aa17.02■□□□□ 0.32
CLK3-210ENST00000563112 TMCO3Q6UWJ1 677 aa17.02■□□□□ 0.32
CLK3-210ENST00000563112 PARGQ86W56 976 aa17.02■□□□□ 0.32
CLK3-210ENST00000563112 NIPA2Q8N8Q9 360 aa17.02■□□□□ 0.32
CLK3-210ENST00000563112 TSC1Q92574 1164 aa17.02■□□□□ 0.32
CLK3-210ENST00000563112 CCDC86Q9H6F5 360 aaKnown RBP17.02■□□□□ 0.32
CLK3-210ENST00000563112 ATP13A3Q9H7F0 1226 aa17.02■□□□□ 0.32
CLK3-210ENST00000563112 STAU2Q9NUL3 570 aaKnown RBP eCLIP17.02■□□□□ 0.32
CLK3-210ENST00000563112 TSPAN11A1L157 253 aa17.01■□□□□ 0.31
CLK3-210ENST00000563112 FFAR2O15552 330 aa17.01■□□□□ 0.31
CLK3-210ENST00000563112 RARAP10276 462 aa17.01■□□□□ 0.31
CLK3-210ENST00000563112 JUPP14923 745 aa17.01■□□□□ 0.31
CLK3-210ENST00000563112 AMPD1P23109 780 aa17.01■□□□□ 0.31
CLK3-210ENST00000563112 IL1R2P27930 398 aa17.01■□□□□ 0.31
CLK3-210ENST00000563112 SSR1P43307 286 aaKnown RBP17.01■□□□□ 0.31
CLK3-210ENST00000563112 NSUN2Q08J23 767 aaKnown RBP eCLIP17.01■□□□□ 0.31
CLK3-210ENST00000563112 TRIM14Q14142 442 aa17.01■□□□□ 0.31
CLK3-210ENST00000563112 FZD2Q14332 565 aa17.01■□□□□ 0.31
CLK3-210ENST00000563112 HADHQ16836 314 aaKnown RBP17.01■□□□□ 0.31
CLK3-210ENST00000563112 UGP2Q16851 508 aa17.01■□□□□ 0.31
CLK3-210ENST00000563112 PROX2Q3B8N5 592 aa17.01■□□□□ 0.31
CLK3-210ENST00000563112 ZNF542PQ5EBM4 170 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms