RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 ZDHHC7Q9NXF8 308 aa13.03□□□□□ -0.32
SNX1-211ENST00000560829 ZMYM5Q9UJ78 669 aa13.03□□□□□ -0.32
SNX1-211ENST00000560829 ATXN2Q99700 1313 aaKnown RBP13.03□□□□□ -0.32
SNX1-211ENST00000560829 SNAP91O60641 907 aa13.02□□□□□ -0.32
SNX1-211ENST00000560829 GLRA3O75311 464 aa13.02□□□□□ -0.32
SNX1-211ENST00000560829 CSPG5O95196 566 aa13.02□□□□□ -0.32
SNX1-211ENST00000560829 CA3P07451 260 aa13.02□□□□□ -0.32
SNX1-211ENST00000560829 AVPR1AP37288 418 aa13.02□□□□□ -0.32
SNX1-211ENST00000560829 CSKP41240 450 aa13.02□□□□□ -0.32
SNX1-211ENST00000560829 SERPINB4P48594 390 aa13.02□□□□□ -0.32
SNX1-211ENST00000560829 POLD2P49005 469 aa13.02□□□□□ -0.32
SNX1-211ENST00000560829 PDE1CQ14123 709 aaPredicted RBP13.02□□□□□ -0.32
SNX1-211ENST00000560829 SEPT6Q14141 434 aa13.02□□□□□ -0.32
SNX1-211ENST00000560829 SMAD1Q15797 465 aaKnown RBP13.02□□□□□ -0.32
SNX1-211ENST00000560829 DBN1Q16643 649 aa13.02□□□□□ -0.32
SNX1-211ENST00000560829 ARHGAP15Q53QZ3 475 aa13.02□□□□□ -0.32
SNX1-211ENST00000560829 PRSS36Q5K4E3 855 aa13.02□□□□□ -0.32
SNX1-211ENST00000560829 KIAA0408Q6ZU52 694 aa13.02□□□□□ -0.32
SNX1-211ENST00000560829 ZC3HC1Q86WB0 502 aaKnown RBP13.02□□□□□ -0.32
SNX1-211ENST00000560829 CCDC197Q8NCU1 140 aa13.02□□□□□ -0.32
SNX1-211ENST00000560829 OR13J1Q8NGT2 312 aa13.02□□□□□ -0.32
SNX1-211ENST00000560829 SH3RF2Q8TEC5 729 aa13.02□□□□□ -0.32
SNX1-211ENST00000560829 DDI1Q8WTU0 396 aa13.02□□□□□ -0.32
SNX1-211ENST00000560829 SPOCK2Q92563 424 aa13.02□□□□□ -0.32
SNX1-211ENST00000560829 ATP2A3Q93084 1043 aa13.02□□□□□ -0.32
SNX1-211ENST00000560829 TCEAL4Q96EI5 215 aa13.02□□□□□ -0.32
SNX1-211ENST00000560829 CABS1Q96KC9 395 aa13.02□□□□□ -0.32
SNX1-211ENST00000560829 NSMCE3Q96MG7 304 aa13.02□□□□□ -0.32
SNX1-211ENST00000560829 GPR22Q99680 433 aa13.02□□□□□ -0.32
SNX1-211ENST00000560829 ELAC2Q9BQ52 826 aaKnown RBP13.02□□□□□ -0.32
SNX1-211ENST00000560829 FAM167BQ9BTA0 163 aa13.02□□□□□ -0.32
SNX1-211ENST00000560829 TDRD1Q9BXT4 1180 aaKnown RBP13.02□□□□□ -0.32
SNX1-211ENST00000560829 SNX15Q9NRS6 342 aa13.02□□□□□ -0.32
SNX1-211ENST00000560829 DCDC2Q9UHG0 476 aa13.02□□□□□ -0.32
SNX1-211ENST00000560829 VPS51Q9UID3 782 aa13.02□□□□□ -0.32
SNX1-211ENST00000560829 VPS28Q9UK41 221 aa13.02□□□□□ -0.32
SNX1-211ENST00000560829 STARD13Q9Y3M8 1113 aa13.02□□□□□ -0.32
SNX1-211ENST00000560829 OBSL1O75147 1896 aa13.02□□□□□ -0.32
SNX1-211ENST00000560829 CCDC78A2IDD5 438 aa13.02□□□□□ -0.33
SNX1-211ENST00000560829 KLF11O14901 512 aa13.02□□□□□ -0.33
SNX1-211ENST00000560829 SLC7A4O43246 635 aa13.02□□□□□ -0.33
SNX1-211ENST00000560829 LDB2O43679 373 aa13.02□□□□□ -0.33
SNX1-211ENST00000560829 EDF1O60869 148 aaKnown RBP13.02□□□□□ -0.33
SNX1-211ENST00000560829 TMCC1O94876 653 aa13.02□□□□□ -0.33
SNX1-211ENST00000560829 PAPLNO95428 1278 aa13.02□□□□□ -0.33
SNX1-211ENST00000560829 TCF3P15923 654 aa13.02□□□□□ -0.33
SNX1-211ENST00000560829 GABRB3P28472 473 aa13.02□□□□□ -0.33
SNX1-211ENST00000560829 TYK2P29597 1187 aa13.02□□□□□ -0.33
SNX1-211ENST00000560829 NUMBP49757 651 aa13.02□□□□□ -0.33
SNX1-211ENST00000560829 SCNN1BP51168 640 aa13.02□□□□□ -0.33
SNX1-211ENST00000560829 PLK1P53350 603 aa13.02□□□□□ -0.33
SNX1-211ENST00000560829 ERVK-21P61565 698 aa13.02□□□□□ -0.33
SNX1-211ENST00000560829 TEAD2Q15562 447 aa13.02□□□□□ -0.33
SNX1-211ENST00000560829 C9orf50Q5SZB4 431 aa13.02□□□□□ -0.33
SNX1-211ENST00000560829 FAM109BQ6ICB4 259 aaPredicted RBP13.02□□□□□ -0.33
SNX1-211ENST00000560829 CGB2Q6NT52 195 aa13.02□□□□□ -0.33
SNX1-211ENST00000560829 YTHDF3Q7Z739 585 aaKnown RBP13.02□□□□□ -0.33
SNX1-211ENST00000560829 GALNT7Q86SF2 657 aa13.02□□□□□ -0.33
SNX1-211ENST00000560829 LMNTD2Q8IXW0 634 aa13.02□□□□□ -0.33
SNX1-211ENST00000560829 C2CD4AQ8NCU7 369 aaPredicted RBP13.02□□□□□ -0.33
SNX1-211ENST00000560829 FIBINQ8TAL6 211 aa13.02□□□□□ -0.33
SNX1-211ENST00000560829 BRSK1Q8TDC3 778 aa13.02□□□□□ -0.33
SNX1-211ENST00000560829 ACDQ96AP0 544 aa13.02□□□□□ -0.33
SNX1-211ENST00000560829 VPS39Q96JC1 886 aa13.02□□□□□ -0.33
SNX1-211ENST00000560829 C2orf49Q9BVC5 232 aaPredicted RBP13.02□□□□□ -0.33
SNX1-211ENST00000560829 PITPNM3Q9BZ71 974 aa13.02□□□□□ -0.33
SNX1-211ENST00000560829 SCUBE2Q9NQ36 999 aa13.02□□□□□ -0.33
SNX1-211ENST00000560829 LHX3Q9UBR4 397 aa13.02□□□□□ -0.33
SNX1-211ENST00000560829 MTO1Q9Y2Z2 717 aaKnown RBP13.02□□□□□ -0.33
SNX1-211ENST00000560829 LAMA2P24043 3122 aaKnown RBP13.01□□□□□ -0.33
SNX1-211ENST00000560829 GRXCR1A8MXD5 290 aa13.01□□□□□ -0.33
SNX1-211ENST00000560829 GOLGA8TH3BQL2 631 aa13.01□□□□□ -0.33
SNX1-211ENST00000560829 IL1BP01584 269 aa13.01□□□□□ -0.33
SNX1-211ENST00000560829 AHSGP02765 367 aa13.01□□□□□ -0.33
SNX1-211ENST00000560829 MPOP05164 745 aa13.01□□□□□ -0.33
SNX1-211ENST00000560829 GSTA1P08263 222 aa13.01□□□□□ -0.33
SNX1-211ENST00000560829 PSMA3P25788 255 aa13.01□□□□□ -0.33
SNX1-211ENST00000560829 SLC12A1Q13621 1099 aa13.01□□□□□ -0.33
SNX1-211ENST00000560829 THOC5Q13769 683 aaKnown RBP13.01□□□□□ -0.33
SNX1-211ENST00000560829 ZKSCAN8Q15776 578 aaPredicted RBP13.01□□□□□ -0.33
SNX1-211ENST00000560829 SLC5A9Q2M3M2 681 aa13.01□□□□□ -0.33
SNX1-211ENST00000560829 RETSATQ6NUM9 610 aa13.01□□□□□ -0.33
SNX1-211ENST00000560829 NEPROQ6NW34 567 aa13.01□□□□□ -0.33
SNX1-211ENST00000560829 GABPB2Q8TAK5 448 aaPredicted RBP13.01□□□□□ -0.33
SNX1-211ENST00000560829 CALML6Q8TD86 181 aa13.01□□□□□ -0.33
SNX1-211ENST00000560829 PTPRN2Q92932 1015 aa13.01□□□□□ -0.33
SNX1-211ENST00000560829 ZNF707Q96C28 371 aaPredicted RBP13.01□□□□□ -0.33
SNX1-211ENST00000560829 LMLNQ96KR4 655 aa13.01□□□□□ -0.33
SNX1-211ENST00000560829 MANSC1Q9H8J5 431 aa13.01□□□□□ -0.33
SNX1-211ENST00000560829 SIRPGQ9P1W8 387 aa13.01□□□□□ -0.33
SNX1-211ENST00000560829 KIAA1522Q9P206 1035 aaPredicted RBP13.01□□□□□ -0.33
SNX1-211ENST00000560829 GGT7Q9UJ14 662 aa13.01□□□□□ -0.33
SNX1-211ENST00000560829 CCL26Q9Y258 94 aa13.01□□□□□ -0.33
SNX1-211ENST00000560829 USP15Q9Y4E8 981 aaPredicted RBP13.01□□□□□ -0.33
SNX1-211ENST00000560829 BIRC5O15392 142 aa13□□□□□ -0.33
SNX1-211ENST00000560829 PRLP01236 227 aa13□□□□□ -0.33
SNX1-211ENST00000560829 CYBBP04839 570 aa13□□□□□ -0.33
SNX1-211ENST00000560829 SLC1A2P43004 574 aa13□□□□□ -0.33
SNX1-211ENST00000560829 NCEH1Q6PIU2 408 aa13□□□□□ -0.33
SNX1-211ENST00000560829 LINGO4Q6UY18 593 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms