RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 CNTN1Q12860 1018 aa10.18□□□□□ -0.78
USP3-216ENST00000559873 OASLQ15646 514 aaKnown RBP10.18□□□□□ -0.78
USP3-216ENST00000559873 MAP7D1Q3KQU3 841 aa10.18□□□□□ -0.78
USP3-216ENST00000559873 ARMC12Q5T9G4 340 aa10.18□□□□□ -0.78
USP3-216ENST00000559873 NCEH1Q6PIU2 408 aa10.18□□□□□ -0.78
USP3-216ENST00000559873 GSTA5Q7RTV2 222 aa10.18□□□□□ -0.78
USP3-216ENST00000559873 PID1Q7Z2X4 250 aa10.18□□□□□ -0.78
USP3-216ENST00000559873 PGBD5Q8N414 524 aa10.18□□□□□ -0.78
USP3-216ENST00000559873 C12orf50Q8NA57 414 aaPredicted RBP10.18□□□□□ -0.78
USP3-216ENST00000559873 GRK7Q8WTQ7 553 aa10.18□□□□□ -0.78
USP3-216ENST00000559873 COG1Q8WTW3 980 aa10.18□□□□□ -0.78
USP3-216ENST00000559873 PDCD6IPQ8WUM4 868 aaKnown RBP10.18□□□□□ -0.78
USP3-216ENST00000559873 LRRN4Q8WUT4 740 aa10.18□□□□□ -0.78
USP3-216ENST00000559873 C1orf54Q8WWF1 131 aa10.18□□□□□ -0.78
USP3-216ENST00000559873 SPOCK2Q92563 424 aa10.18□□□□□ -0.78
USP3-216ENST00000559873 CAPZA3Q96KX2 299 aa10.18□□□□□ -0.78
USP3-216ENST00000559873 KLHL32Q96NJ5 620 aa10.18□□□□□ -0.78
USP3-216ENST00000559873 RUNDC3BQ96NL0 473 aa10.18□□□□□ -0.78
USP3-216ENST00000559873 TDRD1Q9BXT4 1180 aaKnown RBP10.18□□□□□ -0.78
USP3-216ENST00000559873 CEP41Q9BYV8 373 aa10.18□□□□□ -0.78
USP3-216ENST00000559873 GBA3Q9H227 469 aa10.18□□□□□ -0.78
USP3-216ENST00000559873 SUV39H2Q9H5I1 410 aa10.18□□□□□ -0.78
USP3-216ENST00000559873 NOD2Q9HC29 1040 aa10.18□□□□□ -0.78
USP3-216ENST00000559873 GLOD4Q9HC38 313 aa10.18□□□□□ -0.78
USP3-216ENST00000559873 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.18□□□□□ -0.78
USP3-216ENST00000559873 FEZ2Q9UHY8 353 aaPredicted RBP10.18□□□□□ -0.78
USP3-216ENST00000559873 SARDHQ9UL12 918 aa10.18□□□□□ -0.78
USP3-216ENST00000559873 RAB23Q9ULC3 237 aa10.18□□□□□ -0.78
USP3-216ENST00000559873 R3HDM2Q9Y2K5 976 aaKnown RBP10.18□□□□□ -0.78
USP3-216ENST00000559873 IGHV1OR15-9A0A0B4J2B8 117 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 C5orf60A6NFR6 353 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 C16orf96A6NNT2 1141 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 UPK3BL1B0FP48 263 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 UPK3BL2E5RIL1 263 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 H0Y858 1186 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 CCDC188H7C350 402 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 NEMP1O14524 444 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 PLRG1O43660 514 aaKnown RBP10.17□□□□□ -0.78
USP3-216ENST00000559873 LILRB5O75023 590 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 PHF2O75151 1096 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 RHOBTB1O94844 696 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 SEMA4FO95754 770 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 GAS8O95995 478 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 IFNB1P01574 187 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 NFKB1P19838 968 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 GKP32189 559 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 DRD3P35462 400 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 CD86P42081 329 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 FNTAP49354 379 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 EPHB1P54762 984 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 RPL26P61254 145 aaKnown RBP10.17□□□□□ -0.78
USP3-216ENST00000559873 DSC2Q02487 901 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 RPL6Q02878 288 aaKnown RBP10.17□□□□□ -0.78
USP3-216ENST00000559873 DMWDQ09019 674 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 MPP3Q13368 585 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 SNX1Q13596 522 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 SIM2Q14190 667 aaPredicted RBP10.17□□□□□ -0.78
USP3-216ENST00000559873 POM121L1PQ3SYA9 428 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 SPDYCQ5MJ68 293 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 ANKRD20A2Q5SQ80 823 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 ANKRD20A1Q5TYW2 823 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 AGBL4Q5VU57 503 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 ANKRD20A3Q5VUR7 823 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 CCDC70Q6NSX1 233 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 C4orf22Q6V702 233 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP10.17□□□□□ -0.78
USP3-216ENST00000559873 PARS2Q7L3T8 475 aaKnown RBP10.17□□□□□ -0.78
USP3-216ENST00000559873 LPCAT2Q7L5N7 544 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 FAM124AQ86V42 546 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 CAMK1DQ8IU85 385 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 ZNF567Q8N184 647 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP10.17□□□□□ -0.78
USP3-216ENST00000559873 AADATQ8N5Z0 425 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 CNTD1Q8N815 330 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 FAM71DQ8N9W8 422 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 PRSS33Q8NF86 280 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 OR2T34Q8NGX1 318 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 KIF18AQ8NI77 898 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 ATOH1Q92858 354 aaPredicted RBP10.17□□□□□ -0.78
USP3-216ENST00000559873 FOXJ1Q92949 421 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 MAGOHBQ96A72 148 aaKnown RBP10.17□□□□□ -0.78
USP3-216ENST00000559873 FAM131CQ96AQ9 280 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 ARRDC3Q96B67 414 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 ECHDC3Q96DC8 303 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 RTP4Q96DX8 246 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 IFT43Q96FT9 208 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 IMP4Q96G21 291 aaKnown RBP10.17□□□□□ -0.78
USP3-216ENST00000559873 TOE1Q96GM8 510 aaKnown RBP10.17□□□□□ -0.78
USP3-216ENST00000559873 ZNF419Q96HQ0 510 aaPredicted RBP10.17□□□□□ -0.78
USP3-216ENST00000559873 MS4A14Q96JA4 679 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 FCRL5Q96RD9 977 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 TMEM121Q9BTD3 319 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 FSD1LQ9BXM9 530 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 ADGRE3Q9BY15 652 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 KDM4CQ9H3R0 1056 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 SEMA4AQ9H3S1 761 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 PREBQ9HCU5 417 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 FAM153AQ9UHL3 310 aa10.17□□□□□ -0.78
USP3-216ENST00000559873 RPL26L1Q9UNX3 145 aaKnown RBP10.17□□□□□ -0.78
USP3-216ENST00000559873 DRG1Q9Y295 367 aaKnown RBP10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms