RNA–Protein interactions for RNA: ENST00000559556.5

TPM1-220, Transcript of tropomyosin 1, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene TPM1, Length 977 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-220ENST00000559556 WBP1Q96G27 269 aa13.28□□□□□ -0.28
TPM1-220ENST00000559556 ATXN7L3BQ96GX2 97 aa13.28□□□□□ -0.28
TPM1-220ENST00000559556 VCPIP1Q96JH7 1222 aa13.28□□□□□ -0.28
TPM1-220ENST00000559556 LRRC61Q9BV99 259 aa13.28□□□□□ -0.28
TPM1-220ENST00000559556 GANQ9H2C0 597 aa13.28□□□□□ -0.28
TPM1-220ENST00000559556 TCEAL2Q9H3H9 227 aaPredicted RBP13.28□□□□□ -0.28
TPM1-220ENST00000559556 CLSTN2Q9H4D0 955 aa13.28□□□□□ -0.28
TPM1-220ENST00000559556 CPNE5Q9HCH3 593 aa13.28□□□□□ -0.28
TPM1-220ENST00000559556 SPASTQ9UBP0 616 aa13.28□□□□□ -0.28
TPM1-220ENST00000559556 DNAI1Q9UI46 699 aa13.28□□□□□ -0.28
TPM1-220ENST00000559556 PNMA8BQ9ULN7 279 aaPredicted RBP13.28□□□□□ -0.28
TPM1-220ENST00000559556 PCDHGA8Q9Y5G5 932 aa13.28□□□□□ -0.28
TPM1-220ENST00000559556 CAPN8A6NHC0 703 aa13.27□□□□□ -0.29
TPM1-220ENST00000559556 CDRT15L2A8MXV6 281 aa13.27□□□□□ -0.29
TPM1-220ENST00000559556 PES1O00541 588 aaKnown RBP13.27□□□□□ -0.29
TPM1-220ENST00000559556 TOR1BO14657 336 aa13.27□□□□□ -0.29
TPM1-220ENST00000559556 RAMP2O60895 175 aa13.27□□□□□ -0.29
TPM1-220ENST00000559556 GCATO75600 419 aa13.27□□□□□ -0.29
TPM1-220ENST00000559556 TMCC1O94876 653 aa13.27□□□□□ -0.29
TPM1-220ENST00000559556 EEF1GP26641 437 aaKnown RBP13.27□□□□□ -0.29
TPM1-220ENST00000559556 MLLT3P42568 568 aaPredicted RBP13.27□□□□□ -0.29
TPM1-220ENST00000559556 HDAC4P56524 1084 aa13.27□□□□□ -0.29
TPM1-220ENST00000559556 GSCP56915 257 aaPredicted RBP13.27□□□□□ -0.29
TPM1-220ENST00000559556 FMO1Q01740 532 aa13.27□□□□□ -0.29
TPM1-220ENST00000559556 CDR2Q01850 454 aa13.27□□□□□ -0.29
TPM1-220ENST00000559556 CFHR1Q03591 330 aa13.27□□□□□ -0.29
TPM1-220ENST00000559556 MYLK3Q32MK0 819 aa13.27□□□□□ -0.29
TPM1-220ENST00000559556 PRRT3Q5FWE3 981 aa13.27□□□□□ -0.29
TPM1-220ENST00000559556 TCP11X2Q5H9J9 407 aa13.27□□□□□ -0.29
TPM1-220ENST00000559556 PERM1Q5SV97 790 aa13.27□□□□□ -0.29
TPM1-220ENST00000559556 ATXN7L2Q5T6C5 722 aaPredicted RBP13.27□□□□□ -0.29
TPM1-220ENST00000559556 RBM44Q6ZP01 1051 aaKnown RBP13.27□□□□□ -0.29
TPM1-220ENST00000559556 ZNF605Q86T29 641 aa13.27□□□□□ -0.29
TPM1-220ENST00000559556 CCDC185Q8N715 623 aa13.27□□□□□ -0.29
TPM1-220ENST00000559556 JOSD2Q8TAC2 188 aa13.27□□□□□ -0.29
TPM1-220ENST00000559556 WDR48Q8TAF3 677 aa13.27□□□□□ -0.29
TPM1-220ENST00000559556 GPT2Q8TD30 523 aa13.27□□□□□ -0.29
TPM1-220ENST00000559556 GLMNQ92990 594 aa13.27□□□□□ -0.29
TPM1-220ENST00000559556 NAT6Q93015 286 aa13.27□□□□□ -0.29
TPM1-220ENST00000559556 NTAN1Q96AB6 310 aa13.27□□□□□ -0.29
TPM1-220ENST00000559556 PRR11Q96HE9 360 aaPredicted RBP13.27□□□□□ -0.29
TPM1-220ENST00000559556 GDAP1L1Q96MZ0 367 aa13.27□□□□□ -0.29
TPM1-220ENST00000559556 KLHL32Q96NJ5 620 aa13.27□□□□□ -0.29
TPM1-220ENST00000559556 SLC46A1Q96NT5 459 aa13.27□□□□□ -0.29
TPM1-220ENST00000559556 TTYH3Q9C0H2 523 aa13.27□□□□□ -0.29
TPM1-220ENST00000559556 DACH1Q9UI36 760 aa13.27□□□□□ -0.29
TPM1-220ENST00000559556 MUSKO15146 869 aa13.26□□□□□ -0.29
TPM1-220ENST00000559556 KLK10O43240 276 aa13.26□□□□□ -0.29
TPM1-220ENST00000559556 KDELR3O43731 214 aa13.26□□□□□ -0.29
TPM1-220ENST00000559556 TM7SF2O76062 418 aa13.26□□□□□ -0.29
TPM1-220ENST00000559556 GFPT2O94808 682 aa13.26□□□□□ -0.29
TPM1-220ENST00000559556 PLEKP08567 350 aaPredicted RBP13.26□□□□□ -0.29
TPM1-220ENST00000559556 CHRNB2P17787 502 aa13.26□□□□□ -0.29
TPM1-220ENST00000559556 RPIAP49247 311 aa13.26□□□□□ -0.29
TPM1-220ENST00000559556 PDX1P52945 283 aa13.26□□□□□ -0.29
TPM1-220ENST00000559556 JAM2P57087 298 aa13.26□□□□□ -0.29
TPM1-220ENST00000559556 C1QBPQ07021 282 aaKnown RBP13.26□□□□□ -0.29
TPM1-220ENST00000559556 VAC14Q08AM6 782 aa13.26□□□□□ -0.29
TPM1-220ENST00000559556 PTP4A2Q12974 167 aa13.26□□□□□ -0.29
TPM1-220ENST00000559556 LRRC73Q5JTD7 316 aa13.26□□□□□ -0.29
TPM1-220ENST00000559556 ARHGAP40Q5TG30 622 aa13.26□□□□□ -0.29
TPM1-220ENST00000559556 GDPD4Q6W3E5 623 aa13.26□□□□□ -0.29
TPM1-220ENST00000559556 TRIM72Q6ZMU5 477 aa13.26□□□□□ -0.29
TPM1-220ENST00000559556 LEKR1Q6ZMV7 388 aa13.26□□□□□ -0.29
TPM1-220ENST00000559556 CLEC14AQ86T13 490 aa13.26□□□□□ -0.29
TPM1-220ENST00000559556 VPS36Q86VN1 386 aa13.26□□□□□ -0.29
TPM1-220ENST00000559556 TP53I13Q8NBR0 393 aaPredicted RBP13.26□□□□□ -0.29
TPM1-220ENST00000559556 FAM172AQ8WUF8 416 aa13.26□□□□□ -0.29
TPM1-220ENST00000559556 CASKIN2Q8WXE0 1202 aa13.26□□□□□ -0.29
TPM1-220ENST00000559556 C11orf70Q9BRQ4 267 aa13.26□□□□□ -0.29
TPM1-220ENST00000559556 C1QTNF7Q9BXJ2 289 aa13.26□□□□□ -0.29
TPM1-220ENST00000559556 MAGEB5Q9BZ81 275 aa13.26□□□□□ -0.29
TPM1-220ENST00000559556 SLC13A1Q9BZW2 595 aa13.26□□□□□ -0.29
TPM1-220ENST00000559556 CLPBQ9H078 707 aa13.26□□□□□ -0.29
TPM1-220ENST00000559556 NOL6Q9H6R4 1146 aaKnown RBP13.26□□□□□ -0.29
TPM1-220ENST00000559556 SAMSN1Q9NSI8 373 aaKnown RBP13.26□□□□□ -0.29
TPM1-220ENST00000559556 DKK3Q9UBP4 350 aa13.26□□□□□ -0.29
TPM1-220ENST00000559556 MFHAS1Q9Y4C4 1052 aa13.26□□□□□ -0.29
TPM1-220ENST00000559556 RP1L1Q8IWN7 2480 aaPredicted RBP13.25□□□□□ -0.29
TPM1-220ENST00000559556 ZIC2O95409 532 aaPredicted RBP13.25□□□□□ -0.29
TPM1-220ENST00000559556 GJB6O95452 261 aa13.25□□□□□ -0.29
TPM1-220ENST00000559556 IGSF6O95976 241 aa13.25□□□□□ -0.29
TPM1-220ENST00000559556 ANXA6P08133 673 aa13.25□□□□□ -0.29
TPM1-220ENST00000559556 RBMS1P29558 406 aaKnown RBP13.25□□□□□ -0.29
TPM1-220ENST00000559556 ADKP55263 362 aaKnown RBP13.25□□□□□ -0.29
TPM1-220ENST00000559556 RAD51Q06609 339 aa13.25□□□□□ -0.29
TPM1-220ENST00000559556 TAF1BQ53T94 588 aaPredicted RBP13.25□□□□□ -0.29
TPM1-220ENST00000559556 INO80DQ53TQ3 878 aaPredicted RBP13.25□□□□□ -0.29
TPM1-220ENST00000559556 CRTC1Q6UUV9 634 aa13.25□□□□□ -0.29
TPM1-220ENST00000559556 TTC7BQ86TV6 843 aa13.25□□□□□ -0.29
TPM1-220ENST00000559556 RTL3Q8N8U3 475 aaKnown RBP13.25□□□□□ -0.29
TPM1-220ENST00000559556 WDR36Q8NI36 951 aaKnown RBP13.25□□□□□ -0.29
TPM1-220ENST00000559556 SLC30A5Q8TAD4 765 aa13.25□□□□□ -0.29
TPM1-220ENST00000559556 CXorf40AQ8TE69 158 aa13.25□□□□□ -0.29
TPM1-220ENST00000559556 TTC9Q92623 222 aa13.25□□□□□ -0.29
TPM1-220ENST00000559556 CCDC97Q96F63 343 aaPredicted RBP13.25□□□□□ -0.29
TPM1-220ENST00000559556 LIN37Q96GY3 246 aaPredicted RBP13.25□□□□□ -0.29
TPM1-220ENST00000559556 EPAS1Q99814 870 aa13.25□□□□□ -0.29
TPM1-220ENST00000559556 MBNL1Q9NR56 388 aaKnown RBP13.25□□□□□ -0.29
TPM1-220ENST00000559556 CCDC187A0A096LP49 1063 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms