RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 LRRC72A6NJI9 287 aa17.67■□□□□ 0.42
SHMT2-225ENST00000556798 MEI4A8MW99 385 aa17.67■□□□□ 0.42
SHMT2-225ENST00000556798 PLRG1O43660 514 aaKnown RBP17.67■□□□□ 0.42
SHMT2-225ENST00000556798 FSBPO95073 299 aa17.67■□□□□ 0.42
SHMT2-225ENST00000556798 ITPKAP23677 461 aa17.67■□□□□ 0.42
SHMT2-225ENST00000556798 PTPN3P26045 913 aa17.67■□□□□ 0.42
SHMT2-225ENST00000556798 EIF3EP60228 445 aaKnown RBP17.67■□□□□ 0.42
SHMT2-225ENST00000556798 PPP2CBP62714 309 aa17.67■□□□□ 0.42
SHMT2-225ENST00000556798 PPP2CAP67775 309 aa17.67■□□□□ 0.42
SHMT2-225ENST00000556798 CREB5Q02930 508 aa17.67■□□□□ 0.42
SHMT2-225ENST00000556798 BCL2L1Q07817 233 aa17.67■□□□□ 0.42
SHMT2-225ENST00000556798 GRM3Q14832 879 aa17.67■□□□□ 0.42
SHMT2-225ENST00000556798 SLC45A4Q5BKX6 768 aa17.67■□□□□ 0.42
SHMT2-225ENST00000556798 CFAP58Q5T655 872 aa17.67■□□□□ 0.42
SHMT2-225ENST00000556798 LYSMD4Q5XG99 296 aa17.67■□□□□ 0.42
SHMT2-225ENST00000556798 ZSWIM9Q86XI8 627 aa17.67■□□□□ 0.42
SHMT2-225ENST00000556798 SLC13A5Q86YT5 568 aaPredicted RBP17.67■□□□□ 0.42
SHMT2-225ENST00000556798 CNTD1Q8N815 330 aa17.67■□□□□ 0.42
SHMT2-225ENST00000556798 OR2T34Q8NGX1 318 aa17.67■□□□□ 0.42
SHMT2-225ENST00000556798 AGAP3Q96P47 875 aa17.67■□□□□ 0.42
SHMT2-225ENST00000556798 NCDNQ9UBB6 729 aa17.67■□□□□ 0.42
SHMT2-225ENST00000556798 GMEB2Q9UKD1 530 aa17.67■□□□□ 0.42
SHMT2-225ENST00000556798 ITM2BQ9Y287 266 aa17.67■□□□□ 0.42
SHMT2-225ENST00000556798 ATP8A1Q9Y2Q0 1164 aa17.67■□□□□ 0.42
SHMT2-225ENST00000556798 JRKLQ9Y4A0 524 aa17.67■□□□□ 0.42
SHMT2-225ENST00000556798 TBC1D3DA0A087WVF3 549 aa17.66■□□□□ 0.42
SHMT2-225ENST00000556798 TBC1D3IA0A087WXS9 549 aa17.66■□□□□ 0.42
SHMT2-225ENST00000556798 TBC1D3EA0A087X179 549 aa17.66■□□□□ 0.42
SHMT2-225ENST00000556798 TBC1D3KA0A087X1G2 549 aa17.66■□□□□ 0.42
SHMT2-225ENST00000556798 TBC1D3FA6NER0 549 aaPredicted RBP17.66■□□□□ 0.42
SHMT2-225ENST00000556798 HACD1B0YJ81 288 aa17.66■□□□□ 0.42
SHMT2-225ENST00000556798 TBC1D3LB9A6J9 549 aa17.66■□□□□ 0.42
SHMT2-225ENST00000556798 EPN2O95208 641 aa17.66■□□□□ 0.42
SHMT2-225ENST00000556798 ATP1A1P05023 1023 aaKnown RBP17.66■□□□□ 0.42
SHMT2-225ENST00000556798 TBC1D3HP0C7X1 549 aa17.66■□□□□ 0.42
SHMT2-225ENST00000556798 RBP3P10745 1247 aa17.66■□□□□ 0.42
SHMT2-225ENST00000556798 ITIH2P19823 946 aa17.66■□□□□ 0.42
SHMT2-225ENST00000556798 MAOBP27338 520 aa17.66■□□□□ 0.42
SHMT2-225ENST00000556798 RBL1P28749 1068 aa17.66■□□□□ 0.42
SHMT2-225ENST00000556798 MAPK8P45983 427 aa17.66■□□□□ 0.42
SHMT2-225ENST00000556798 NIPAL4Q0D2K0 466 aa17.66■□□□□ 0.42
SHMT2-225ENST00000556798 WASHC5Q12768 1159 aa17.66■□□□□ 0.42
SHMT2-225ENST00000556798 TRAF2Q12933 501 aa17.66■□□□□ 0.42
SHMT2-225ENST00000556798 XRCC4Q13426 336 aa17.66■□□□□ 0.42
SHMT2-225ENST00000556798 IHHQ14623 411 aa17.66■□□□□ 0.42
SHMT2-225ENST00000556798 CCDC6Q16204 474 aa17.66■□□□□ 0.42
SHMT2-225ENST00000556798 SPDYCQ5MJ68 293 aa17.66■□□□□ 0.42
SHMT2-225ENST00000556798 KIAA0895LQ68EN5 471 aa17.66■□□□□ 0.42
SHMT2-225ENST00000556798 TBC1D3GQ6DHY5 549 aa17.66■□□□□ 0.42
SHMT2-225ENST00000556798 ALG1LQ6GMV1 187 aa17.66■□□□□ 0.42
SHMT2-225ENST00000556798 TBC1D3CQ6IPX1 549 aa17.66■□□□□ 0.42
SHMT2-225ENST00000556798 CYP2U1Q7Z449 544 aa17.66■□□□□ 0.42
SHMT2-225ENST00000556798 TBC1D3Q8IZP1 549 aaPredicted RBP17.66■□□□□ 0.42
SHMT2-225ENST00000556798 PAF1Q8N7H5 531 aa17.66■□□□□ 0.42
SHMT2-225ENST00000556798 CADM4Q8NFZ8 388 aa17.66■□□□□ 0.42
SHMT2-225ENST00000556798 ARRDC2Q8TBH0 407 aa17.66■□□□□ 0.42
SHMT2-225ENST00000556798 PDCD6IPQ8WUM4 868 aaKnown RBP17.66■□□□□ 0.42
SHMT2-225ENST00000556798 HTR3CQ8WXA8 447 aa17.66■□□□□ 0.42
SHMT2-225ENST00000556798 ZNF641Q96N77 438 aaPredicted RBP17.66■□□□□ 0.42
SHMT2-225ENST00000556798 ARRDC1-AS1Q9H2J1 176 aa17.66■□□□□ 0.42
SHMT2-225ENST00000556798 DKK3Q9UBP4 350 aa17.66■□□□□ 0.42
SHMT2-225ENST00000556798 AMACRQ9UHK6 382 aa17.66■□□□□ 0.42
SHMT2-225ENST00000556798 GGT7Q9UJ14 662 aa17.66■□□□□ 0.42
SHMT2-225ENST00000556798 ZBTB32Q9Y2Y4 487 aaPredicted RBP17.66■□□□□ 0.42
SHMT2-225ENST00000556798 PCDHGC4Q9Y5F7 938 aa17.66■□□□□ 0.42
SHMT2-225ENST00000556798 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP17.65■□□□□ 0.42
SHMT2-225ENST00000556798 TSPAN11A1L157 253 aa17.65■□□□□ 0.42
SHMT2-225ENST00000556798 METTL12A8MUP2 240 aa17.65■□□□□ 0.42
SHMT2-225ENST00000556798 TRAFD1O14545 582 aaPredicted RBP17.65■□□□□ 0.42
SHMT2-225ENST00000556798 SPINT1O43278 529 aa17.65■□□□□ 0.42
SHMT2-225ENST00000556798 CEP104O60308 925 aa17.65■□□□□ 0.42
SHMT2-225ENST00000556798 PRKCGP05129 697 aa17.65■□□□□ 0.42
SHMT2-225ENST00000556798 IGHV4-34P06331 123 aa17.65■□□□□ 0.42
SHMT2-225ENST00000556798 TIMP2P16035 220 aa17.65■□□□□ 0.42
SHMT2-225ENST00000556798 MAT2AP31153 395 aaKnown RBP17.65■□□□□ 0.42
SHMT2-225ENST00000556798 CCDC15Q0P6D6 951 aa17.65■□□□□ 0.42
SHMT2-225ENST00000556798 CDKL3Q8IVW4 592 aaPredicted RBP17.65■□□□□ 0.42
SHMT2-225ENST00000556798 RGL4Q8IZJ4 473 aa17.65■□□□□ 0.42
SHMT2-225ENST00000556798 DCLK2Q8N568 766 aa17.65■□□□□ 0.42
SHMT2-225ENST00000556798 ATG4AQ8WYN0 398 aa17.65■□□□□ 0.42
SHMT2-225ENST00000556798 PIGKQ92643 395 aa17.65■□□□□ 0.42
SHMT2-225ENST00000556798 FOXJ1Q92949 421 aa17.65■□□□□ 0.42
SHMT2-225ENST00000556798 BIRC7Q96CA5 298 aa17.65■□□□□ 0.42
SHMT2-225ENST00000556798 FAM122AQ96E09 287 aa17.65■□□□□ 0.42
SHMT2-225ENST00000556798 LOXL4Q96JB6 756 aa17.65■□□□□ 0.42
SHMT2-225ENST00000556798 HINFPQ9BQA5 517 aa17.65■□□□□ 0.42
SHMT2-225ENST00000556798 HAUS2Q9NVX0 235 aa17.65■□□□□ 0.42
SHMT2-225ENST00000556798 FADS3Q9Y5Q0 445 aa17.65■□□□□ 0.42
SHMT2-225ENST00000556798 F5H423 210 aaPredicted RBP17.64■□□□□ 0.41
SHMT2-225ENST00000556798 RNGTTO60942 597 aaKnown RBP17.64■□□□□ 0.41
SHMT2-225ENST00000556798 PCDH8O95206 1070 aa17.64■□□□□ 0.41
SHMT2-225ENST00000556798 RETP07949 1114 aa17.64■□□□□ 0.41
SHMT2-225ENST00000556798 XPAP23025 273 aaPredicted RBP17.64■□□□□ 0.41
SHMT2-225ENST00000556798 MSNP26038 577 aaKnown RBP17.64■□□□□ 0.41
SHMT2-225ENST00000556798 PLA2G5P39877 138 aa17.64■□□□□ 0.41
SHMT2-225ENST00000556798 MPLP40238 635 aa17.64■□□□□ 0.41
SHMT2-225ENST00000556798 CD86P42081 329 aa17.64■□□□□ 0.41
SHMT2-225ENST00000556798 SEMG2Q02383 582 aa17.64■□□□□ 0.41
SHMT2-225ENST00000556798 TEX44Q53QW1 395 aa17.64■□□□□ 0.41
SHMT2-225ENST00000556798 RALGPS1Q5JS13 557 aa17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms