RNA–Protein interactions for RNA: ENST00000555543.1

VTI1B-205, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-205ENST00000555543 FEM1CQ96JP0 617 aa20.74■□□□□ 0.91
VTI1B-205ENST00000555543 NSMCE3Q96MG7 304 aa20.74■□□□□ 0.91
VTI1B-205ENST00000555543 CALN1Q9BXU9 219 aa20.74■□□□□ 0.91
VTI1B-205ENST00000555543 SLC17A9Q9BYT1 436 aa20.74■□□□□ 0.91
VTI1B-205ENST00000555543 LCMT1Q9UIC8 334 aa20.74■□□□□ 0.91
VTI1B-205ENST00000555543 TSPAN11A1L157 253 aa20.73■□□□□ 0.91
VTI1B-205ENST00000555543 IGLON5A6NGN9 336 aa20.73■□□□□ 0.91
VTI1B-205ENST00000555543 FLRT2O43155 660 aa20.73■□□□□ 0.91
VTI1B-205ENST00000555543 TSPAN6O43657 245 aa20.73■□□□□ 0.91
VTI1B-205ENST00000555543 PCDHGA12O60330 932 aa20.73■□□□□ 0.91
VTI1B-205ENST00000555543 AKT2P31751 481 aa20.73■□□□□ 0.91
VTI1B-205ENST00000555543 SERPINB6P35237 376 aa20.73■□□□□ 0.91
VTI1B-205ENST00000555543 CSNK1DP48730 415 aa20.73■□□□□ 0.91
VTI1B-205ENST00000555543 RFTN1Q14699 578 aaPredicted RBP20.73■□□□□ 0.91
VTI1B-205ENST00000555543 LBRQ14739 615 aaKnown RBP20.73■□□□□ 0.91
VTI1B-205ENST00000555543 NCBP2-AS2Q69YL0 99 aa20.73■□□□□ 0.91
VTI1B-205ENST00000555543 SRLQ86TD4 932 aa20.73■□□□□ 0.91
VTI1B-205ENST00000555543 TTC7BQ86TV6 843 aa20.73■□□□□ 0.91
VTI1B-205ENST00000555543 ZSWIM9Q86XI8 627 aa20.73■□□□□ 0.91
VTI1B-205ENST00000555543 GATAD2AQ86YP4 633 aa20.73■□□□□ 0.91
VTI1B-205ENST00000555543 RHOT2Q8IXI1 618 aa20.73■□□□□ 0.91
VTI1B-205ENST00000555543 ATPAF2Q8N5M1 289 aa20.73■□□□□ 0.91
VTI1B-205ENST00000555543 OR13H1Q8NG92 308 aa20.73■□□□□ 0.91
VTI1B-205ENST00000555543 ZNF670Q9BS34 389 aa20.73■□□□□ 0.91
VTI1B-205ENST00000555543 SUV39H2Q9H5I1 410 aa20.73■□□□□ 0.91
VTI1B-205ENST00000555543 NEMP1O14524 444 aa20.72■□□□□ 0.91
VTI1B-205ENST00000555543 DFNA5O60443 496 aa20.72■□□□□ 0.91
VTI1B-205ENST00000555543 TOP3BO95985 862 aaKnown RBP20.72■□□□□ 0.91
VTI1B-205ENST00000555543 PAK4O96013 591 aaPredicted RBP20.72■□□□□ 0.91
VTI1B-205ENST00000555543 KRT7P08729 469 aa20.72■□□□□ 0.91
VTI1B-205ENST00000555543 THEGLP0DJG4 465 aa20.72■□□□□ 0.91
VTI1B-205ENST00000555543 OVGP1Q12889 678 aa20.72■□□□□ 0.91
VTI1B-205ENST00000555543 FOXC1Q12948 553 aa20.72■□□□□ 0.91
VTI1B-205ENST00000555543 TRIP6Q15654 476 aaKnown RBP20.72■□□□□ 0.91
VTI1B-205ENST00000555543 ANKRD20A8PQ5CZ79 823 aa20.72■□□□□ 0.91
VTI1B-205ENST00000555543 KDM7AQ6ZMT4 941 aa20.72■□□□□ 0.91
VTI1B-205ENST00000555543 KCTD6Q8NC69 237 aa20.72■□□□□ 0.91
VTI1B-205ENST00000555543 RAPGEF5Q92565 580 aa20.72■□□□□ 0.91
VTI1B-205ENST00000555543 ZNF599Q96NL3 588 aa20.72■□□□□ 0.91
VTI1B-205ENST00000555543 PSKH2Q96QS6 385 aa20.72■□□□□ 0.91
VTI1B-205ENST00000555543 TUBGCP5Q96RT8 1024 aa20.72■□□□□ 0.91
VTI1B-205ENST00000555543 KLF6Q99612 283 aaPredicted RBP20.72■□□□□ 0.91
VTI1B-205ENST00000555543 C1QTNF2Q9BXJ5 285 aa20.72■□□□□ 0.91
VTI1B-205ENST00000555543 SEPT3Q9UH03 358 aa20.72■□□□□ 0.91
VTI1B-205ENST00000555543 INTUQ9ULD6 942 aa20.72■□□□□ 0.91
VTI1B-205ENST00000555543 WASF3Q9UPY6 502 aa20.72■□□□□ 0.91
VTI1B-205ENST00000555543 FRYQ5TBA9 3013 aa20.72■□□□□ 0.91
VTI1B-205ENST00000555543 TTC24A2A3L6 582 aaPredicted RBP20.71■□□□□ 0.91
VTI1B-205ENST00000555543 EPHA8P29322 1005 aaPredicted RBP20.71■□□□□ 0.91
VTI1B-205ENST00000555543 HNRNPDQ14103 355 aaKnown RBP20.71■□□□□ 0.91
VTI1B-205ENST00000555543 GRM3Q14832 879 aa20.71■□□□□ 0.91
VTI1B-205ENST00000555543 PDK2Q15119 407 aa20.71■□□□□ 0.91
VTI1B-205ENST00000555543 ABI3BPQ7Z7G0 1075 aa20.71■□□□□ 0.91
VTI1B-205ENST00000555543 SLC22A18ASQ8N1D0 253 aa20.71■□□□□ 0.91
VTI1B-205ENST00000555543 PGBD5Q8N414 524 aa20.71■□□□□ 0.91
VTI1B-205ENST00000555543 PQLC3Q8N755 202 aa20.71■□□□□ 0.91
VTI1B-205ENST00000555543 RHBDD1Q8TEB9 315 aa20.71■□□□□ 0.91
VTI1B-205ENST00000555543 FAF2Q96CS3 445 aa20.71■□□□□ 0.91
VTI1B-205ENST00000555543 KLHDC7BQ96G42 594 aa20.71■□□□□ 0.91
VTI1B-205ENST00000555543 BMFQ96LC9 184 aa20.71■□□□□ 0.91
VTI1B-205ENST00000555543 ZNF641Q96N77 438 aaPredicted RBP20.71■□□□□ 0.91
VTI1B-205ENST00000555543 CAAP1Q9H8G2 361 aa20.71■□□□□ 0.91
VTI1B-205ENST00000555543 ERVMER34-1Q9H9K5 563 aa20.71■□□□□ 0.91
VTI1B-205ENST00000555543 TFR2Q9UP52 801 aa20.71■□□□□ 0.91
VTI1B-205ENST00000555543 ANKRD36A6QL64 1941 aa20.7■□□□□ 0.91
VTI1B-205ENST00000555543 ACACBO00763 2458 aa20.7■□□□□ 0.9
VTI1B-205ENST00000555543 AKAP13Q12802 2813 aa20.7■□□□□ 0.9
VTI1B-205ENST00000555543 POM121BA6NF01 834 aa20.7■□□□□ 0.9
VTI1B-205ENST00000555543 MMP20O60882 483 aa20.7■□□□□ 0.9
VTI1B-205ENST00000555543 MAP3K6O95382 1288 aa20.7■□□□□ 0.9
VTI1B-205ENST00000555543 PRKCGP05129 697 aa20.7■□□□□ 0.9
VTI1B-205ENST00000555543 ARHGAP25P42331 645 aa20.7■□□□□ 0.9
VTI1B-205ENST00000555543 GRK6P43250 576 aa20.7■□□□□ 0.9
VTI1B-205ENST00000555543 SCNN1BP51168 640 aa20.7■□□□□ 0.9
VTI1B-205ENST00000555543 NSUN2Q08J23 767 aaKnown RBP eCLIP20.7■□□□□ 0.9
VTI1B-205ENST00000555543 ZNF235Q14590 738 aa20.7■□□□□ 0.9
VTI1B-205ENST00000555543 SUZ12Q15022 739 aaKnown RBP20.7■□□□□ 0.9
VTI1B-205ENST00000555543 PAFAH1B3Q15102 231 aaKnown RBP20.7■□□□□ 0.9
VTI1B-205ENST00000555543 TCEAL1Q15170 157 aa20.7■□□□□ 0.9
VTI1B-205ENST00000555543 ZSCAN30Q86W11 494 aa20.7■□□□□ 0.9
VTI1B-205ENST00000555543 SAP25Q8TEE9 199 aa20.7■□□□□ 0.9
VTI1B-205ENST00000555543 WRAP53Q9BUR4 548 aaKnown RBP20.7■□□□□ 0.9
VTI1B-205ENST00000555543 ATP13A3Q9H7F0 1226 aa20.7■□□□□ 0.9
VTI1B-205ENST00000555543 PCDH12Q9NPG4 1184 aa20.7■□□□□ 0.9
VTI1B-205ENST00000555543 ANGPTL2Q9UKU9 493 aa20.7■□□□□ 0.9
VTI1B-205ENST00000555543 HYOU1Q9Y4L1 999 aa20.7■□□□□ 0.9
VTI1B-205ENST00000555543 PCDHB9Q9Y5E1 797 aa20.7■□□□□ 0.9
VTI1B-205ENST00000555543 SHROOM3Q8TF72 1996 aa20.7■□□□□ 0.9
VTI1B-205ENST00000555543 MAGEC1O60732 1142 aa20.69■□□□□ 0.9
VTI1B-205ENST00000555543 LCA5LO95447 670 aa20.69■□□□□ 0.9
VTI1B-205ENST00000555543 CR2P20023 1033 aa20.69■□□□□ 0.9
VTI1B-205ENST00000555543 SPINK2P20155 84 aa20.69■□□□□ 0.9
VTI1B-205ENST00000555543 KDELR1P24390 212 aa20.69■□□□□ 0.9
VTI1B-205ENST00000555543 SERPINA4P29622 427 aa20.69■□□□□ 0.9
VTI1B-205ENST00000555543 MAGEA1P43355 309 aa20.69■□□□□ 0.9
VTI1B-205ENST00000555543 RXRGP48443 463 aa20.69■□□□□ 0.9
VTI1B-205ENST00000555543 ARRB1P49407 418 aaPredicted RBP20.69■□□□□ 0.9
VTI1B-205ENST00000555543 SHC2P98077 582 aa20.69■□□□□ 0.9
VTI1B-205ENST00000555543 GALNT2Q10471 571 aa20.69■□□□□ 0.9
VTI1B-205ENST00000555543 BNIP3Q12983 259 aa20.69■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms